Wall clock time and date at job start Sat Apr 11 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99774 * 2 1 4 4 H 1.48492 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46948 * 300.00210 * 3 2 1 6 6 H 1.48499 * 109.47223 * 59.99859 * 3 2 1 7 7 C 1.37873 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00259 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.46899 * 110.99833 * 169.99693 * 10 9 7 12 12 C 1.53243 * 109.33926 * 187.25076 * 11 10 9 13 13 N 1.47082 * 108.52340 * 306.17327 * 12 11 10 14 14 C 1.34778 * 120.87926 * 231.18657 * 13 12 11 15 15 O 1.21281 * 119.99977 * 359.97438 * 14 13 12 16 16 C 1.50695 * 119.99682 * 179.97438 * 14 13 12 17 17 C 1.50698 * 109.47166 * 179.97438 * 16 14 13 18 18 C 1.38254 * 119.97832 * 99.99947 * 17 16 14 19 19 C 1.38184 * 120.03725 * 179.97438 * 18 17 16 20 20 C 1.38489 * 120.00007 * 0.30286 * 19 18 17 21 21 F 1.35099 * 120.01436 * 179.69477 * 20 19 18 22 22 C 1.38418 * 119.96186 * 359.44937 * 20 19 18 23 23 C 1.38332 * 119.96098 * 0.52530 * 22 20 19 24 24 Cl 1.73596 * 120.00050 * 179.73067 * 23 22 20 25 25 C 1.47077 * 118.23500 * 51.45352 * 13 12 11 26 26 C 1.46904 * 111.00072 * 294.29851 * 10 9 7 27 27 H 0.96998 * 119.99969 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46825 * 59.99212 * 9 7 2 29 29 H 1.08999 * 109.46689 * 299.99514 * 9 7 2 30 30 H 1.08997 * 109.49170 * 67.29370 * 11 10 9 31 31 H 1.08997 * 109.49636 * 307.20983 * 11 10 9 32 32 H 1.08999 * 109.62749 * 186.45669 * 12 11 10 33 33 H 1.09002 * 109.62459 * 65.88174 * 12 11 10 34 34 H 1.09006 * 109.47385 * 60.00314 * 16 14 13 35 35 H 1.08997 * 109.47725 * 300.00205 * 16 14 13 36 36 H 1.07997 * 119.97953 * 0.02887 * 18 17 16 37 37 H 1.08002 * 119.99524 * 180.02562 * 19 18 17 38 38 H 1.08000 * 120.01597 * 180.27341 * 22 20 19 39 39 H 1.09006 * 109.62563 * 68.25726 * 25 13 12 40 40 H 1.09003 * 109.62825 * 188.83014 * 25 13 12 41 41 H 1.08996 * 109.49403 * 292.70700 * 26 10 9 42 42 H 1.09004 * 109.49151 * 52.78597 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5214 -4.8934 0.2388 12 6 2.5640 -6.0031 0.4115 13 7 3.4618 -5.9861 -0.7534 14 6 3.7121 -7.1123 -1.4503 15 8 3.1947 -8.1580 -1.1191 16 6 4.6349 -7.0720 -2.6410 17 6 4.7454 -8.4514 -3.2377 18 6 4.0078 -8.7797 -4.3600 19 6 4.1086 -10.0440 -4.9085 20 6 4.9441 -10.9851 -4.3303 21 9 5.0382 -12.2232 -4.8627 22 6 5.6865 -10.6548 -3.2098 23 6 5.5848 -9.3885 -2.6623 24 17 6.5101 -8.9753 -1.2528 25 6 4.0839 -4.7089 -1.1339 26 6 2.9769 -3.6490 -1.2494 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5570 -0.8896 29 1 0.6243 -2.5567 0.8903 30 1 0.8798 -5.1263 -0.6110 31 1 0.9163 -4.8191 1.1423 32 1 2.0635 -6.9693 0.4740 33 1 3.1397 -5.8263 1.3201 34 1 5.6216 -6.7333 -2.3248 35 1 4.2363 -6.3841 -3.3866 36 1 3.3531 -8.0474 -4.8088 37 1 3.5324 -10.2997 -5.7855 38 1 6.3417 -11.3866 -2.7608 39 1 4.8029 -4.4101 -0.3710 40 1 4.5888 -4.8190 -2.0937 41 1 2.3150 -3.8993 -2.0785 42 1 3.4272 -2.6721 -1.4252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602205311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:57 Heat of formation + Delta-G solvation = -52.228355 kcal Electronic energy + Delta-G solvation = -26700.845061 eV Core-core repulsion = 22621.200681 eV Total energy + Delta-G solvation = -4079.644380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.26990 -40.41483 -39.23878 -37.47022 -36.74302 -34.43865 -33.11744 -32.40546 -31.32985 -30.82108 -28.59054 -27.42450 -25.38281 -23.53229 -23.37160 -22.59610 -21.79785 -20.54434 -18.71813 -18.15095 -17.21633 -17.10220 -16.46404 -16.22168 -15.96232 -15.45400 -15.29158 -14.92304 -14.75129 -14.47189 -14.19526 -14.09350 -13.85135 -13.81461 -13.59043 -13.04352 -13.00798 -12.52061 -12.21223 -12.13508 -11.90808 -11.65600 -11.60663 -11.33623 -11.21485 -11.09474 -11.01307 -10.79379 -10.68213 -10.55118 -9.94702 -9.78371 -9.32610 -9.31028 -8.89657 -8.55051 -8.46813 -7.37786 -6.10535 -4.12766 0.61779 0.71370 1.74730 2.66921 2.90153 3.24220 3.25489 3.33514 3.37040 3.85380 4.21737 4.31196 4.34998 4.49901 4.57435 4.72793 4.75815 5.01765 5.11940 5.20872 5.25398 5.28556 5.34703 5.48355 5.52237 5.53346 5.60502 5.70323 5.73383 5.83581 5.91838 6.00147 6.24270 6.33718 6.39731 6.41339 6.63804 7.17365 7.22900 7.50036 7.70055 7.96890 8.07219 8.21854 8.42531 8.94753 9.52097 11.00273 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023253 B = 0.002274 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.867726 B =12309.939328 C =12450.854545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.041 3.959 12 C 0.119 3.881 13 N -0.607 5.607 14 C 0.519 3.481 15 O -0.540 6.540 16 C -0.108 4.108 17 C -0.063 4.063 18 C -0.067 4.067 19 C -0.148 4.148 20 C 0.109 3.891 21 F -0.135 7.135 22 C -0.147 4.147 23 C 0.010 3.990 24 Cl -0.051 7.051 25 C 0.107 3.893 26 C 0.050 3.950 27 H 0.261 0.739 28 H -0.009 1.009 29 H 0.032 0.968 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.025 0.975 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.745 -18.490 -8.893 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.088 4.088 12 C -0.003 4.003 13 N -0.340 5.340 14 C 0.306 3.694 15 O -0.417 6.417 16 C -0.148 4.148 17 C -0.064 4.064 18 C -0.085 4.085 19 C -0.166 4.166 20 C 0.090 3.910 21 F -0.113 7.113 22 C -0.166 4.166 23 C -0.017 4.017 24 Cl -0.022 7.022 25 C -0.016 4.016 26 C -0.079 4.079 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.043 0.957 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.722 -18.850 -8.209 23.667 hybrid contribution -0.167 0.757 -0.584 0.971 sum 11.556 -18.093 -8.794 23.200 Atomic orbital electron populations 1.69966 1.06104 1.26790 1.50790 1.25003 0.94864 0.99395 0.95355 0.86442 0.80031 0.83384 0.77558 1.19622 1.21117 1.20990 1.21166 0.93485 0.89830 1.50310 0.91737 1.19730 0.89994 0.87174 0.96243 1.62071 1.28125 1.02740 1.33164 1.22405 0.94950 0.90520 1.00926 1.21750 0.91667 0.99468 0.87435 1.48198 1.46884 1.08517 1.30420 1.20215 0.81951 0.83485 0.83729 1.90697 1.51928 1.29947 1.69178 1.20763 1.01928 0.94692 0.97385 1.19270 0.96398 0.95037 0.95711 1.20871 0.97177 0.96127 0.94345 1.21202 1.00126 0.93321 1.01995 1.17437 0.98809 0.80666 0.94137 1.91523 1.95072 1.39366 1.85361 1.20906 1.02397 0.96517 0.96828 1.20420 0.96630 0.94060 0.90637 1.98393 1.71628 1.93383 1.38754 1.22146 0.96260 0.82679 1.00503 1.22414 0.95043 0.99028 0.91428 0.92894 0.99112 0.95016 0.95565 0.90075 0.89411 0.90949 0.87262 0.87230 0.83902 0.83977 0.83679 0.90403 0.90219 0.95660 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -13.52 8.41 -34.44 -0.29 -13.81 16 8 H 0.06 1.67 7.13 -52.49 -0.37 1.30 16 9 C 0.19 4.78 4.72 -4.98 -0.02 4.76 16 10 N -0.54 -10.69 4.62 -235.47 -1.09 -11.78 16 11 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 12 C 0.12 1.79 6.60 -3.60 -0.02 1.77 16 13 N -0.61 -8.53 3.00 -172.18 -0.52 -9.04 16 14 C 0.52 7.09 7.47 -10.99 -0.08 7.01 16 15 O -0.54 -9.06 15.40 5.56 0.09 -8.98 16 16 C -0.11 -1.07 3.66 -29.04 -0.11 -1.18 16 17 C -0.06 -0.65 4.43 -104.58 -0.46 -1.11 16 18 C -0.07 -0.59 9.67 -39.60 -0.38 -0.97 16 19 C -0.15 -1.26 10.03 -39.51 -0.40 -1.66 16 20 C 0.11 1.06 7.30 -39.42 -0.29 0.77 16 21 F -0.13 -1.35 17.27 2.25 0.04 -1.31 16 22 C -0.15 -1.45 9.81 -39.48 -0.39 -1.83 16 23 C 0.01 0.10 6.19 -39.51 -0.24 -0.14 16 24 Cl -0.05 -0.55 27.32 -51.86 -1.42 -1.96 16 25 C 0.11 1.39 6.53 -3.37 -0.02 1.36 16 26 C 0.05 0.85 5.47 -3.46 -0.02 0.83 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 29 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.38 7.99 -51.93 -0.41 0.96 16 32 H 0.09 1.33 7.06 -51.93 -0.37 0.96 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.11 0.95 7.20 -51.93 -0.37 0.58 16 35 H 0.11 0.85 7.54 -51.93 -0.39 0.46 16 36 H 0.14 0.96 8.04 -52.49 -0.42 0.54 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.08 0.77 6.02 -51.93 -0.31 0.45 16 41 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 1.77 6.67 -51.93 -0.35 1.42 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -31.28 363.84 -10.05 -41.34 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -5.51 Total: -2.26 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.85 Total: -2.10 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.87 Total: -45.95 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.42 Total: -1.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.28 -10.05 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.892 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds