Wall clock time and date at job start Sat Apr 11 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99774 * 2 1 4 4 H 1.48492 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46948 * 300.00210 * 3 2 1 6 6 H 1.48499 * 109.47223 * 59.99859 * 3 2 1 7 7 C 1.37873 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00259 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.46899 * 110.99833 * 169.99693 * 10 9 7 12 12 C 1.53243 * 109.33926 * 187.25076 * 11 10 9 13 13 N 1.47082 * 108.52340 * 306.17327 * 12 11 10 14 14 C 1.34778 * 120.87926 * 231.18657 * 13 12 11 15 15 O 1.21281 * 119.99977 * 359.97438 * 14 13 12 16 16 C 1.50695 * 119.99682 * 179.97438 * 14 13 12 17 17 C 1.50698 * 109.47166 * 179.97438 * 16 14 13 18 18 C 1.38254 * 119.97832 * 99.99947 * 17 16 14 19 19 C 1.38184 * 120.03725 * 179.97438 * 18 17 16 20 20 C 1.38489 * 120.00007 * 0.30286 * 19 18 17 21 21 F 1.35099 * 120.01436 * 179.69477 * 20 19 18 22 22 C 1.38418 * 119.96186 * 359.44937 * 20 19 18 23 23 C 1.38332 * 119.96098 * 0.52530 * 22 20 19 24 24 Cl 1.73596 * 120.00050 * 179.73067 * 23 22 20 25 25 C 1.47077 * 118.23500 * 51.45352 * 13 12 11 26 26 C 1.46904 * 111.00072 * 294.29851 * 10 9 7 27 27 H 0.96998 * 119.99969 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46825 * 59.99212 * 9 7 2 29 29 H 1.08999 * 109.46689 * 299.99514 * 9 7 2 30 30 H 1.08997 * 109.49170 * 67.29370 * 11 10 9 31 31 H 1.08997 * 109.49636 * 307.20983 * 11 10 9 32 32 H 1.08999 * 109.62749 * 186.45669 * 12 11 10 33 33 H 1.09002 * 109.62459 * 65.88174 * 12 11 10 34 34 H 1.09006 * 109.47385 * 60.00314 * 16 14 13 35 35 H 1.08997 * 109.47725 * 300.00205 * 16 14 13 36 36 H 1.07997 * 119.97953 * 0.02887 * 18 17 16 37 37 H 1.08002 * 119.99524 * 180.02562 * 19 18 17 38 38 H 1.08000 * 120.01597 * 180.27341 * 22 20 19 39 39 H 1.09006 * 109.62563 * 68.25726 * 25 13 12 40 40 H 1.09003 * 109.62825 * 188.83014 * 25 13 12 41 41 H 1.08996 * 109.49403 * 292.70700 * 26 10 9 42 42 H 1.09004 * 109.49151 * 52.78597 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5214 -4.8934 0.2388 12 6 2.5640 -6.0031 0.4115 13 7 3.4618 -5.9861 -0.7534 14 6 3.7121 -7.1123 -1.4503 15 8 3.1947 -8.1580 -1.1191 16 6 4.6349 -7.0720 -2.6410 17 6 4.7454 -8.4514 -3.2377 18 6 4.0078 -8.7797 -4.3600 19 6 4.1086 -10.0440 -4.9085 20 6 4.9441 -10.9851 -4.3303 21 9 5.0382 -12.2232 -4.8627 22 6 5.6865 -10.6548 -3.2098 23 6 5.5848 -9.3885 -2.6623 24 17 6.5101 -8.9753 -1.2528 25 6 4.0839 -4.7089 -1.1339 26 6 2.9769 -3.6490 -1.2494 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5570 -0.8896 29 1 0.6243 -2.5567 0.8903 30 1 0.8798 -5.1263 -0.6110 31 1 0.9163 -4.8191 1.1423 32 1 2.0635 -6.9693 0.4740 33 1 3.1397 -5.8263 1.3201 34 1 5.6216 -6.7333 -2.3248 35 1 4.2363 -6.3841 -3.3866 36 1 3.3531 -8.0474 -4.8088 37 1 3.5324 -10.2997 -5.7855 38 1 6.3417 -11.3866 -2.7608 39 1 4.8029 -4.4101 -0.3710 40 1 4.5888 -4.8190 -2.0937 41 1 2.3150 -3.8993 -2.0785 42 1 3.4272 -2.6721 -1.4252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602205311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:57 Heat of formation + Delta-G solvation = -70.577994 kcal Electronic energy + Delta-G solvation = -26701.640761 eV Core-core repulsion = 22621.200681 eV Total energy + Delta-G solvation = -4080.440080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.00993 -41.41552 -40.14221 -38.80067 -37.50908 -35.93067 -34.44725 -33.81392 -32.11399 -31.96759 -30.08474 -28.56412 -26.93384 -24.64846 -24.22148 -23.98451 -23.02251 -21.83170 -19.86246 -18.88675 -18.47486 -18.28087 -17.86134 -17.19161 -16.74602 -16.65692 -16.41189 -16.22833 -15.97919 -15.70219 -15.40667 -15.28660 -14.83955 -14.81255 -14.75262 -14.26931 -14.05571 -13.89760 -13.54978 -13.17690 -12.94538 -12.92949 -12.72408 -12.58939 -12.40752 -12.35679 -12.29157 -12.25216 -12.07539 -11.98118 -11.74548 -11.24935 -10.88798 -10.61216 -10.03509 -9.72706 -9.64293 -9.02763 -8.18878 -6.29025 -0.10844 0.02090 0.98968 1.44205 1.45701 1.58418 1.63252 1.94617 2.40810 2.43028 3.13999 3.14694 3.25702 3.50700 3.58445 3.63885 3.88505 4.02719 4.05982 4.08561 4.26318 4.29052 4.34662 4.42177 4.49247 4.55123 4.63569 4.76504 4.82638 4.85751 4.89765 4.97899 5.04051 5.05672 5.22316 5.22663 5.25610 5.47789 5.65974 5.66566 6.04365 6.26200 6.46681 6.58526 6.87720 7.15375 7.41249 8.92633 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023253 B = 0.002274 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.867726 B =12309.939328 C =12450.854545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.071 0.929 9 C 0.208 3.792 10 N -0.541 5.541 11 C 0.045 3.955 12 C 0.129 3.871 13 N -0.611 5.611 14 C 0.519 3.481 15 O -0.573 6.573 16 C -0.104 4.104 17 C -0.075 4.075 18 C -0.068 4.068 19 C -0.145 4.145 20 C 0.098 3.902 21 F -0.139 7.139 22 C -0.155 4.155 23 C -0.005 4.005 24 Cl -0.058 7.058 25 C 0.118 3.882 26 C 0.048 3.952 27 H 0.263 0.737 28 H -0.040 1.040 29 H 0.002 0.998 30 H 0.016 0.984 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.153 0.847 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.020 0.980 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.633 -18.336 -10.179 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.089 0.911 9 C 0.082 3.918 10 N -0.266 5.266 11 C -0.084 4.084 12 C 0.006 3.994 13 N -0.344 5.344 14 C 0.308 3.692 15 O -0.453 6.453 16 C -0.143 4.143 17 C -0.077 4.077 18 C -0.086 4.086 19 C -0.163 4.163 20 C 0.078 3.922 21 F -0.118 7.118 22 C -0.174 4.174 23 C -0.032 4.032 24 Cl -0.029 7.029 25 C -0.004 4.004 26 C -0.081 4.081 27 H 0.072 0.928 28 H -0.022 1.022 29 H 0.020 0.980 30 H 0.034 0.966 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.156 0.844 36 H 0.185 0.815 37 H 0.183 0.817 38 H 0.171 0.829 39 H 0.103 0.897 40 H 0.141 0.859 41 H 0.038 0.962 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.643 -18.714 -9.505 25.034 hybrid contribution -0.803 0.620 -0.202 1.035 sum 12.839 -18.094 -9.707 24.217 Atomic orbital electron populations 1.70104 1.07899 1.27808 1.51982 1.25941 0.95674 1.03329 0.94904 0.85319 0.79261 0.78514 0.77432 1.18093 1.20641 1.20966 1.21487 0.93861 0.90600 1.49656 0.91099 1.19368 0.90102 0.88986 0.93336 1.61998 1.27011 1.02431 1.35126 1.22407 0.95601 0.90103 1.00297 1.21545 0.91347 0.98096 0.88436 1.48279 1.46756 1.09248 1.30137 1.20839 0.81707 0.82546 0.84085 1.90686 1.53342 1.31117 1.70150 1.20829 1.01812 0.95397 0.96249 1.19446 0.96721 0.95180 0.96329 1.21193 0.96860 0.96673 0.93836 1.21500 0.99511 0.92925 1.02375 1.17625 0.99353 0.80820 0.94398 1.91511 1.95156 1.39710 1.85413 1.21045 1.02683 0.96632 0.97049 1.20570 0.97260 0.94607 0.90743 1.98385 1.71855 1.93418 1.39227 1.22165 0.94517 0.80667 1.03094 1.22484 0.95648 1.00196 0.89732 0.92799 1.02225 0.98009 0.96564 0.90505 0.89454 0.90393 0.85660 0.84358 0.81539 0.81722 0.82922 0.89748 0.85931 0.96222 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.14 13.29 21.45 0.28 -54.85 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 3 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.52 -27.69 8.41 25.60 0.22 -27.47 16 8 H 0.07 3.63 7.13 -2.91 -0.02 3.61 16 9 C 0.21 10.65 4.72 85.56 0.40 11.05 16 10 N -0.54 -21.70 4.62 -898.90 -4.15 -25.85 16 11 C 0.05 1.58 5.62 86.38 0.49 2.06 16 12 C 0.13 3.77 6.60 86.35 0.57 4.34 16 13 N -0.61 -15.89 3.00 -817.04 -2.45 -18.34 16 14 C 0.52 12.99 7.47 87.66 0.65 13.64 16 15 O -0.57 -18.46 15.40 -3.03 -0.05 -18.50 16 16 C -0.10 -1.72 3.66 29.10 0.11 -1.61 16 17 C -0.08 -1.37 4.43 -19.84 -0.09 -1.46 16 18 C -0.07 -1.00 9.67 22.26 0.22 -0.79 16 19 C -0.14 -2.13 10.03 22.32 0.22 -1.90 16 20 C 0.10 1.75 7.30 22.37 0.16 1.91 16 21 F -0.14 -2.63 17.27 44.97 0.78 -1.86 16 22 C -0.15 -2.88 9.81 22.34 0.22 -2.66 16 23 C 0.00 -0.10 6.19 22.32 0.14 0.04 16 24 Cl -0.06 -1.17 27.32 -2.72 -0.07 -1.25 16 25 C 0.12 2.71 6.53 86.50 0.57 3.27 16 26 C 0.05 1.58 5.47 86.54 0.47 2.06 16 27 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 28 H -0.04 -2.25 8.12 -2.39 -0.02 -2.26 16 29 H 0.00 0.10 7.97 -2.39 -0.02 0.08 16 30 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 2.70 7.99 -2.39 -0.02 2.68 16 32 H 0.09 2.60 7.06 -2.39 -0.02 2.58 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.13 1.70 7.20 -2.38 -0.02 1.68 16 35 H 0.14 1.50 7.54 -2.39 -0.02 1.48 16 36 H 0.17 1.60 8.04 -2.91 -0.02 1.58 16 37 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.12 1.80 6.02 -2.39 -0.01 1.78 16 41 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.09 3.05 6.67 -2.38 -0.02 3.03 16 Total: -1.00 -68.98 363.84 2.21 -66.77 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.04 Total: 6.62 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 4.81 Total: 2.92 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -6.32 Total: -99.04 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.05 Total: -18.50 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.78 Total: -1.86 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.07 Total: -1.25 kcal Total: -68.98 2.21 -66.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.807 kcal (2) G-P(sol) polarization free energy of solvation -68.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds