Wall clock time and date at job start Sat Apr 11 2020 05:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47022 * 269.99943 * 3 2 1 5 5 H 1.48499 * 109.47042 * 29.99766 * 3 2 1 6 6 H 1.48501 * 109.47250 * 150.00140 * 3 2 1 7 7 C 1.38810 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00098 * 163.07110 * 7 2 1 9 9 N 1.36938 * 120.00133 * 343.06216 * 7 2 1 10 10 C 1.46918 * 120.63371 * 331.84430 * 9 7 2 11 11 C 1.53188 * 108.77688 * 233.63141 * 10 9 7 12 12 C 1.53043 * 109.30982 * 305.36217 * 11 10 9 13 13 N 1.46505 * 109.45990 * 181.38775 * 12 11 10 14 14 C 1.34779 * 120.00058 * 154.97246 * 13 12 11 15 15 O 1.21277 * 119.99789 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99919 * 179.97438 * 14 13 12 17 17 C 1.50705 * 109.46886 * 179.97438 * 16 14 13 18 18 C 1.38238 * 119.98134 * 264.72819 * 17 16 14 19 19 C 1.38191 * 120.03748 * 179.72974 * 18 17 16 20 20 C 1.38482 * 119.99879 * 0.54129 * 19 18 17 21 21 F 1.35100 * 120.02033 * 179.74926 * 20 19 18 22 22 C 1.38422 * 119.96343 * 359.73073 * 20 19 18 23 23 C 1.38335 * 119.95960 * 359.97438 * 22 20 19 24 24 Cl 1.73601 * 119.99875 * 179.97438 * 23 22 20 25 25 C 1.53033 * 109.52809 * 61.37278 * 12 11 10 26 26 C 1.46924 * 120.62677 * 151.86357 * 9 7 2 27 27 H 0.97004 * 119.99335 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.59134 * 113.83744 * 10 9 7 29 29 H 1.09007 * 109.70388 * 353.48199 * 10 9 7 30 30 H 1.09001 * 109.50165 * 185.41468 * 11 10 9 31 31 H 1.08998 * 109.52946 * 65.32575 * 11 10 9 32 32 H 1.09001 * 109.45987 * 301.35850 * 12 11 10 33 33 H 0.96997 * 119.99725 * 334.96954 * 13 12 11 34 34 H 1.08998 * 109.46826 * 300.00007 * 16 14 13 35 35 H 1.08998 * 109.46912 * 59.99991 * 16 14 13 36 36 H 1.08003 * 119.98090 * 359.97438 * 18 17 16 37 37 H 1.07995 * 120.00105 * 180.27110 * 19 18 17 38 38 H 1.08002 * 120.02065 * 180.02562 * 22 20 19 39 39 H 1.08998 * 109.49742 * 58.58122 * 25 12 11 40 40 H 1.08998 * 109.50132 * 178.67894 * 25 12 11 41 41 H 1.09007 * 109.58597 * 246.15563 * 26 9 7 42 42 H 1.08996 * 109.58903 * 6.44156 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3700 -2.3625 0.3444 10 6 0.2263 -2.3409 1.2663 11 6 0.4983 -3.3200 2.4126 12 6 0.8133 -4.7015 1.8342 13 7 1.0415 -5.6484 2.9285 14 6 0.8380 -6.9663 2.7328 15 8 0.4656 -7.3682 1.6509 16 6 1.0733 -7.9403 3.8584 17 6 0.7754 -9.3390 3.3828 18 6 -0.4698 -9.8950 3.6090 19 6 -0.7461 -11.1754 3.1685 20 6 0.2284 -11.9063 2.5098 21 9 -0.0396 -13.1599 2.0834 22 6 1.4771 -11.3516 2.2882 23 6 1.7500 -10.0675 2.7245 24 17 3.3159 -9.3711 2.4477 25 6 2.0685 -4.6171 0.9629 26 6 1.8142 -3.6528 -0.2000 27 1 -0.4849 0.8401 -0.0004 28 1 -0.6768 -2.6416 0.7354 29 1 0.0966 -1.3357 1.6675 30 1 -0.3821 -3.3855 3.0519 31 1 1.3478 -2.9685 2.9982 32 1 -0.0268 -5.0418 1.2287 33 1 1.3390 -5.3268 3.7939 34 1 2.1129 -7.8793 4.1803 35 1 0.4189 -7.6942 4.6946 36 1 -1.2285 -9.3270 4.1269 37 1 -1.7205 -11.6075 3.3417 38 1 2.2377 -11.9207 1.7743 39 1 2.9033 -4.2530 1.5617 40 1 2.3059 -5.6058 0.5701 41 1 1.0405 -4.0607 -0.8507 42 1 2.7334 -3.5125 -0.7688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610860649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:03 Heat of formation + Delta-G solvation = -49.136920 kcal Electronic energy + Delta-G solvation = -26669.982577 eV Core-core repulsion = 22590.472252 eV Total energy + Delta-G solvation = -4079.510325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.25873 -40.26182 -39.08377 -37.29206 -36.74151 -34.41716 -33.04799 -32.05186 -31.31682 -30.17633 -29.49915 -27.55237 -24.92534 -23.52949 -22.70670 -22.22977 -21.63816 -20.20444 -19.28768 -18.18080 -17.23256 -17.12073 -16.63450 -16.26272 -15.94462 -15.44649 -15.07517 -14.92001 -14.70226 -14.17392 -14.03020 -13.91710 -13.67848 -13.54295 -13.15051 -12.97479 -12.75155 -12.50141 -12.24846 -12.14857 -11.65626 -11.59422 -11.46552 -11.20683 -11.12581 -10.87195 -10.71759 -10.50754 -10.28898 -10.05131 -9.91488 -9.72515 -9.52699 -9.31766 -8.88913 -8.72330 -8.46693 -6.69093 -5.80818 -3.22776 0.62145 0.71873 1.74944 2.74559 2.96463 3.36055 3.43306 3.45418 3.47067 3.86235 4.21188 4.32319 4.48543 4.51140 4.72983 4.86338 5.01566 5.11831 5.25142 5.32808 5.41204 5.49319 5.53298 5.54929 5.59597 5.70810 5.86907 5.91156 6.06984 6.26368 6.32386 6.34488 6.51706 6.56320 6.58154 6.79562 6.90675 6.99002 7.30171 7.57709 7.70165 7.78831 8.37288 8.43622 9.19747 9.82968 10.40050 11.28216 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.026693 B = 0.002266 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.731775 B =12353.727076 C =12704.557016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.152 3.848 13 N -0.724 5.724 14 C 0.513 3.487 15 O -0.531 6.531 16 C -0.111 4.111 17 C -0.062 4.062 18 C -0.066 4.066 19 C -0.147 4.147 20 C 0.109 3.891 21 F -0.135 7.135 22 C -0.146 4.146 23 C 0.007 3.993 24 Cl -0.050 7.050 25 C -0.138 4.138 26 C 0.148 3.852 27 H 0.254 0.746 28 H 0.020 0.980 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.396 0.604 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.020 0.980 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.043 -21.653 12.421 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.049 3.951 13 N -0.374 5.374 14 C 0.298 3.702 15 O -0.407 6.407 16 C -0.150 4.150 17 C -0.063 4.063 18 C -0.085 4.085 19 C -0.166 4.166 20 C 0.090 3.910 21 F -0.113 7.113 22 C -0.166 4.166 23 C -0.020 4.020 24 Cl -0.021 7.021 25 C -0.179 4.179 26 C 0.021 3.979 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.229 0.771 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.796 -21.760 11.564 24.655 hybrid contribution 0.670 0.824 0.273 1.096 sum 1.466 -20.936 11.837 24.096 Atomic orbital electron populations 1.70030 1.05254 1.25519 1.54000 1.25054 0.95293 0.98424 1.00917 0.86306 0.79131 0.83637 0.77756 1.21378 1.21562 1.20514 1.19177 0.92571 0.84749 1.41633 0.91691 1.44086 1.35823 1.01657 1.49970 1.20731 0.88895 0.97911 0.87680 1.22534 1.00487 0.94775 1.00811 1.21039 0.98490 0.88182 0.87424 1.46324 1.68792 1.06404 1.15889 1.20238 0.77754 0.83010 0.89153 1.90735 1.45665 1.78144 1.26186 1.20771 1.05280 0.90464 0.98526 1.19225 0.93207 0.95057 0.98845 1.20837 0.95306 0.94150 0.98159 1.21197 0.99704 0.95355 1.00359 1.17438 0.94016 0.80632 0.98945 1.91524 1.94223 1.37669 1.87888 1.20920 0.97020 0.95156 1.03484 1.20447 0.88248 0.93331 0.99994 1.98398 1.24839 1.84115 1.94727 1.22360 0.97132 0.99519 0.98841 1.20872 0.97871 0.86542 0.92661 0.93608 0.96159 0.89042 0.92779 0.92179 0.90068 0.77107 0.87426 0.87414 0.83974 0.83996 0.83648 0.92384 0.92734 0.96234 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.19 55.49 0.62 -25.32 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.72 2.99 -172.32 -0.52 -15.24 16 10 C 0.17 4.04 5.30 -3.72 -0.02 4.02 16 11 C -0.15 -2.59 5.55 -26.61 -0.15 -2.74 16 12 C 0.15 2.56 2.42 -67.89 -0.16 2.40 16 13 N -0.72 -9.39 5.08 -53.76 -0.27 -9.66 16 14 C 0.51 6.79 7.79 -10.98 -0.09 6.70 16 15 O -0.53 -9.28 15.70 5.56 0.09 -9.19 16 16 C -0.11 -0.99 5.34 -29.03 -0.16 -1.15 16 17 C -0.06 -0.62 4.38 -104.58 -0.46 -1.08 16 18 C -0.07 -0.57 9.67 -39.60 -0.38 -0.95 16 19 C -0.15 -1.25 10.03 -39.51 -0.40 -1.65 16 20 C 0.11 1.07 7.30 -39.42 -0.29 0.78 16 21 F -0.13 -1.37 17.27 2.25 0.04 -1.33 16 22 C -0.15 -1.46 9.81 -39.48 -0.39 -1.85 16 23 C 0.01 0.07 6.31 -39.51 -0.25 -0.18 16 24 Cl -0.05 -0.54 27.40 -51.86 -1.42 -1.96 16 25 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 26 C 0.15 3.18 6.52 -3.71 -0.02 3.16 16 27 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 33 H 0.40 3.94 8.60 -40.82 -0.35 3.59 16 34 H 0.11 0.84 7.12 -51.93 -0.37 0.47 16 35 H 0.11 0.64 8.05 -51.93 -0.42 0.22 16 36 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 37 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -32.00 365.66 -9.73 -41.73 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.61 Total: 1.29 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -3.14 Total: -2.23 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.17 Total: -50.22 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.42 Total: -1.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.00 -9.73 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610860649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.405 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds