Wall clock time and date at job start Sat Apr 11 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48500 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46793 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.46814 * 60.00066 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36938 * 119.99936 * 343.08512 * 7 2 1 10 10 C 1.46931 * 120.62972 * 151.83343 * 9 7 2 11 11 C 1.53189 * 108.89061 * 126.29441 * 10 9 7 12 12 C 1.53349 * 109.15350 * 54.57922 * 11 10 9 13 13 N 1.46497 * 109.42224 * 178.67121 * 12 11 10 14 14 C 1.34767 * 120.00147 * 275.12789 * 13 12 11 15 15 O 1.21291 * 120.00243 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00261 * 179.97438 * 14 13 12 17 17 S 1.81398 * 109.47321 * 179.97438 * 16 14 13 18 18 C 1.81398 * 103.00208 * 179.97438 * 17 16 14 19 19 C 1.50697 * 109.47504 * 180.02562 * 18 17 16 20 20 C 1.33388 * 125.20370 * 89.99793 * 19 18 17 21 21 C 1.38427 * 114.92093 * 179.97438 * 20 19 18 22 22 C 1.33385 * 114.92013 * 0.02562 * 21 20 19 23 23 S 1.75883 * 125.20210 * 269.69931 * 19 18 17 24 24 C 1.53047 * 109.60312 * 298.71070 * 12 11 10 25 25 C 1.46927 * 120.63023 * 331.80303 * 9 7 2 26 26 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.58339 * 246.15009 * 10 9 7 28 28 H 1.09003 * 109.58852 * 6.43598 * 10 9 7 29 29 H 1.09001 * 109.49505 * 174.65848 * 11 10 9 30 30 H 1.08994 * 109.50061 * 294.75020 * 11 10 9 31 31 H 1.08997 * 109.42274 * 58.74421 * 12 11 10 32 32 H 0.97002 * 119.99424 * 95.12160 * 13 12 11 33 33 H 1.08996 * 109.46997 * 299.99964 * 16 14 13 34 34 H 1.09002 * 109.46824 * 59.99520 * 16 14 13 35 35 H 1.08999 * 109.46885 * 300.00125 * 18 17 16 36 36 H 1.09007 * 109.46727 * 59.99907 * 18 17 16 37 37 H 1.08001 * 122.53860 * 359.96191 * 20 19 18 38 38 H 1.07993 * 122.53730 * 180.02562 * 21 20 19 39 39 H 1.08000 * 125.20433 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.49464 * 301.42009 * 24 12 11 41 41 H 1.08999 * 109.52117 * 181.33762 * 24 12 11 42 42 H 1.09002 * 109.58255 * 353.42549 * 25 9 7 43 43 H 1.09000 * 109.58150 * 113.70283 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 1.8140 -3.6530 -0.1978 11 6 2.0709 -4.6185 0.9634 12 6 0.8133 -4.7005 1.8372 13 7 1.0417 -5.6469 2.9319 14 6 0.8387 -6.9648 2.7367 15 8 0.4665 -7.3674 1.6548 16 6 1.0741 -7.9384 3.8627 17 16 0.7161 -9.6222 3.2909 18 6 1.0525 -10.6322 4.7597 19 6 0.7976 -12.0829 4.4411 20 6 1.7048 -12.9361 3.9632 21 6 1.2395 -14.2218 3.7473 22 6 -0.0457 -14.4125 4.0492 23 16 -0.7395 -12.9118 4.6494 24 6 0.4986 -3.3187 2.4150 25 6 0.2264 -2.3400 1.2683 26 1 -0.4849 0.8400 0.0004 27 1 1.0401 -4.0610 -0.8480 28 1 2.7331 -3.5130 -0.7669 29 1 2.3090 -5.6064 0.5691 30 1 2.9059 -4.2542 1.5616 31 1 -0.0269 -5.0410 1.2321 32 1 1.3391 -5.3248 3.7972 33 1 2.1136 -7.8769 4.1847 34 1 0.4196 -7.6920 4.6988 35 1 2.0928 -10.5035 5.0586 36 1 0.3991 -10.3184 5.5738 37 1 2.7250 -12.6457 3.7600 38 1 1.8693 -15.0106 3.3634 39 1 -0.5775 -15.3467 3.9459 40 1 1.3485 -2.9667 2.9997 41 1 -0.3815 -3.3832 3.0548 42 1 0.0994 -1.3342 1.6687 43 1 -0.6773 -2.6386 0.7370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701267861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:08 Heat of formation + Delta-G solvation = 16.394436 kcal Electronic energy + Delta-G solvation = -23627.750484 eV Core-core repulsion = 20119.338694 eV Total energy + Delta-G solvation = -3508.411790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.71619 -38.24009 -37.34118 -34.46452 -32.47522 -32.28360 -30.69041 -29.94460 -28.87621 -27.10964 -24.93964 -23.52185 -22.35671 -22.01647 -20.39460 -19.67236 -19.34295 -17.85378 -17.13167 -16.65882 -16.45538 -15.84608 -15.68308 -15.53264 -14.80768 -14.30606 -14.25330 -13.96259 -13.68977 -13.57920 -13.26666 -13.19314 -12.95703 -12.90245 -12.58158 -12.43789 -12.27673 -12.13183 -11.48450 -11.15186 -11.11281 -10.89171 -10.75327 -10.50877 -10.32828 -10.29358 -10.05992 -9.95358 -9.75066 -9.52602 -8.98268 -8.82468 -8.78336 -8.48189 -7.87099 -6.70225 -5.81282 -3.23583 0.36723 1.20549 1.38337 1.63019 2.19184 2.51661 2.63785 3.28355 3.35905 3.43645 3.45879 4.19066 4.47949 4.53311 4.66202 4.71417 4.74428 4.94277 4.95617 5.19503 5.21872 5.31117 5.39666 5.47748 5.55815 5.71386 5.84055 5.88974 6.04782 6.07909 6.23207 6.29314 6.49343 6.53152 6.55670 6.77688 6.86083 6.97712 7.29161 7.53628 7.64024 7.78475 8.27156 8.42886 9.19029 9.82151 10.39214 11.27705 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.044485 B = 0.001689 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.278922 B =16577.912790 C =16715.399906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.147 3.853 11 C -0.139 4.139 12 C 0.152 3.848 13 N -0.719 5.719 14 C 0.526 3.474 15 O -0.520 6.520 16 C -0.134 4.134 17 S -0.161 6.161 18 C -0.039 4.039 19 C -0.166 4.166 20 C -0.119 4.119 21 C -0.135 4.135 22 C -0.211 4.211 23 S 0.117 5.883 24 C -0.146 4.146 25 C 0.174 3.826 26 H 0.254 0.746 27 H 0.021 0.979 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.396 0.604 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.165 0.835 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.797 -25.371 14.801 29.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.020 3.980 11 C -0.179 4.179 12 C 0.048 3.952 13 N -0.370 5.370 14 C 0.309 3.691 15 O -0.396 6.396 16 C -0.286 4.286 17 S 0.067 5.933 18 C -0.189 4.189 19 C -0.284 4.284 20 C -0.153 4.153 21 C -0.166 4.166 22 C -0.347 4.347 23 S 0.381 5.619 24 C -0.186 4.186 25 C 0.047 3.953 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.230 0.770 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.183 0.817 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.366 -25.353 13.504 28.728 hybrid contribution 2.376 0.982 1.238 2.853 sum 2.010 -24.372 14.742 28.554 Atomic orbital electron populations 1.70034 1.05257 1.25437 1.54013 1.25063 0.95298 0.98453 1.00893 0.86226 0.79360 0.83927 0.77277 1.20264 1.21699 1.21586 1.19235 0.92602 0.84732 1.41553 0.91586 1.44097 1.35820 1.01657 1.49960 1.20874 0.97957 0.86528 0.92643 1.22430 0.97014 0.99618 0.98860 1.21154 0.98641 0.88107 0.87250 1.46260 1.68707 1.06001 1.16056 1.19560 0.78113 0.82967 0.88413 1.90766 1.45270 1.77735 1.25790 1.23593 1.06531 0.96401 1.02055 1.87961 1.89826 0.98537 1.16965 1.21878 1.05428 0.91718 0.99842 1.23663 0.97446 0.97633 1.09690 1.20176 1.01031 0.92799 1.01270 1.20165 0.95385 0.97627 1.03399 1.25704 0.98905 1.01859 1.08280 1.84379 1.12046 1.01868 1.63632 1.22534 1.00535 0.94635 1.00874 1.20748 0.88969 0.97912 0.87663 0.93639 0.96130 0.92528 0.92640 0.92334 0.89909 0.77030 0.87267 0.87334 0.88234 0.89022 0.83956 0.84058 0.81731 0.92151 0.92706 0.88999 0.96029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.96 11.20 55.49 0.62 -25.33 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.43 29.59 -169.99 -5.03 16.41 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 8 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 9 N -0.59 -14.72 2.99 -172.32 -0.52 -15.24 16 10 C 0.15 3.16 6.50 -3.71 -0.02 3.14 16 11 C -0.14 -2.52 5.68 -26.45 -0.15 -2.67 16 12 C 0.15 2.59 2.42 -67.73 -0.16 2.43 16 13 N -0.72 -9.57 5.08 -53.61 -0.27 -9.84 16 14 C 0.53 7.41 7.81 -10.99 -0.09 7.32 16 15 O -0.52 -9.72 15.53 5.55 0.09 -9.63 16 16 C -0.13 -1.30 6.42 36.01 0.23 -1.07 16 17 S -0.16 -1.85 20.86 -107.50 -2.24 -4.09 16 18 C -0.04 -0.31 6.43 36.00 0.23 -0.07 16 19 C -0.17 -1.42 5.77 -36.00 -0.21 -1.63 16 20 C -0.12 -0.95 10.05 -41.21 -0.41 -1.37 16 21 C -0.14 -0.97 10.18 -41.21 -0.42 -1.39 16 22 C -0.21 -1.49 11.23 29.04 0.33 -1.16 16 23 S 0.12 0.95 23.33 -107.50 -2.51 -1.56 16 24 C -0.15 -2.61 5.55 -26.61 -0.15 -2.75 16 25 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 26 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.62 7.58 -51.93 -0.39 1.22 16 32 H 0.40 4.00 8.60 -40.82 -0.35 3.65 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.11 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 36 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -32.69 379.70 -11.73 -44.42 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.52 Total: 1.39 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.07 Total: -2.24 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.17 Total: -50.41 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.41 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -4.75 Total: -5.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.69 -11.73 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701267861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.811 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds