Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48500 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46793 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.46814 * 60.00066 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36938 * 119.99936 * 343.08512 * 7 2 1 10 10 C 1.46931 * 120.62972 * 151.83343 * 9 7 2 11 11 C 1.53189 * 108.89061 * 126.29441 * 10 9 7 12 12 C 1.53349 * 109.15350 * 54.57922 * 11 10 9 13 13 N 1.46497 * 109.42224 * 178.67121 * 12 11 10 14 14 C 1.34767 * 120.00147 * 275.12789 * 13 12 11 15 15 O 1.21291 * 120.00243 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00261 * 179.97438 * 14 13 12 17 17 S 1.81398 * 109.47321 * 179.97438 * 16 14 13 18 18 C 1.81398 * 103.00208 * 179.97438 * 17 16 14 19 19 C 1.50697 * 109.47504 * 180.02562 * 18 17 16 20 20 C 1.33388 * 125.20370 * 89.99793 * 19 18 17 21 21 C 1.38427 * 114.92093 * 179.97438 * 20 19 18 22 22 C 1.33385 * 114.92013 * 0.02562 * 21 20 19 23 23 S 1.75883 * 125.20210 * 269.69931 * 19 18 17 24 24 C 1.53047 * 109.60312 * 298.71070 * 12 11 10 25 25 C 1.46927 * 120.63023 * 331.80303 * 9 7 2 26 26 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.58339 * 246.15009 * 10 9 7 28 28 H 1.09003 * 109.58852 * 6.43598 * 10 9 7 29 29 H 1.09001 * 109.49505 * 174.65848 * 11 10 9 30 30 H 1.08994 * 109.50061 * 294.75020 * 11 10 9 31 31 H 1.08997 * 109.42274 * 58.74421 * 12 11 10 32 32 H 0.97002 * 119.99424 * 95.12160 * 13 12 11 33 33 H 1.08996 * 109.46997 * 299.99964 * 16 14 13 34 34 H 1.09002 * 109.46824 * 59.99520 * 16 14 13 35 35 H 1.08999 * 109.46885 * 300.00125 * 18 17 16 36 36 H 1.09007 * 109.46727 * 59.99907 * 18 17 16 37 37 H 1.08001 * 122.53860 * 359.96191 * 20 19 18 38 38 H 1.07993 * 122.53730 * 180.02562 * 21 20 19 39 39 H 1.08000 * 125.20433 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.49464 * 301.42009 * 24 12 11 41 41 H 1.08999 * 109.52117 * 181.33762 * 24 12 11 42 42 H 1.09002 * 109.58255 * 353.42549 * 25 9 7 43 43 H 1.09000 * 109.58150 * 113.70283 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 1.8140 -3.6530 -0.1978 11 6 2.0709 -4.6185 0.9634 12 6 0.8133 -4.7005 1.8372 13 7 1.0417 -5.6469 2.9319 14 6 0.8387 -6.9648 2.7367 15 8 0.4665 -7.3674 1.6548 16 6 1.0741 -7.9384 3.8627 17 16 0.7161 -9.6222 3.2909 18 6 1.0525 -10.6322 4.7597 19 6 0.7976 -12.0829 4.4411 20 6 1.7048 -12.9361 3.9632 21 6 1.2395 -14.2218 3.7473 22 6 -0.0457 -14.4125 4.0492 23 16 -0.7395 -12.9118 4.6494 24 6 0.4986 -3.3187 2.4150 25 6 0.2264 -2.3400 1.2683 26 1 -0.4849 0.8400 0.0004 27 1 1.0401 -4.0610 -0.8480 28 1 2.7331 -3.5130 -0.7669 29 1 2.3090 -5.6064 0.5691 30 1 2.9059 -4.2542 1.5616 31 1 -0.0269 -5.0410 1.2321 32 1 1.3391 -5.3248 3.7972 33 1 2.1136 -7.8769 4.1847 34 1 0.4196 -7.6920 4.6988 35 1 2.0928 -10.5035 5.0586 36 1 0.3991 -10.3184 5.5738 37 1 2.7250 -12.6457 3.7600 38 1 1.8693 -15.0106 3.3634 39 1 -0.5775 -15.3467 3.9459 40 1 1.3485 -2.9667 2.9997 41 1 -0.3815 -3.3832 3.0548 42 1 0.0994 -1.3342 1.6687 43 1 -0.6773 -2.6386 0.7370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701267861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -3.051054 kcal Electronic energy + Delta-G solvation = -23628.593703 eV Core-core repulsion = 20119.338694 eV Total energy + Delta-G solvation = -3509.255009 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.95289 -38.95539 -38.77231 -36.02286 -34.02294 -33.00275 -32.14452 -31.54694 -30.22296 -27.68979 -26.79533 -24.16142 -23.97622 -23.64492 -21.59176 -21.01227 -20.20390 -18.98894 -18.42072 -17.85873 -17.46519 -16.92716 -16.66663 -16.51786 -16.34044 -15.61860 -15.36972 -15.05885 -14.95637 -14.91805 -14.69708 -14.41075 -14.10919 -13.81368 -13.59906 -13.44540 -13.25790 -13.12098 -12.98655 -12.67628 -12.63408 -12.53372 -12.23243 -12.00603 -11.88574 -11.68088 -11.57353 -11.38519 -11.03673 -10.98561 -10.57612 -10.05374 -9.56484 -9.41320 -8.72095 -8.69760 -7.88755 -5.34741 -0.25501 0.61254 0.73303 1.07367 1.47336 1.49299 1.52421 1.56861 1.60117 1.94504 2.20330 2.51328 3.27213 3.59023 3.64499 3.74105 3.90452 4.01208 4.03375 4.12700 4.24825 4.28323 4.31441 4.44261 4.44906 4.63346 4.68197 4.72476 4.80015 4.84227 5.01007 5.03980 5.13751 5.17570 5.28180 5.34766 5.45771 5.51259 5.54849 5.64005 5.70334 6.38007 6.53419 7.13552 7.22978 7.82773 8.35828 9.18527 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.044485 B = 0.001689 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.278922 B =16577.912790 C =16715.399906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.263 4.263 8 H 0.068 0.932 9 N -0.608 5.608 10 C 0.143 3.857 11 C -0.123 4.123 12 C 0.163 3.837 13 N -0.705 5.705 14 C 0.522 3.478 15 O -0.571 6.571 16 C -0.112 4.112 17 S -0.241 6.241 18 C -0.017 4.017 19 C -0.183 4.183 20 C -0.124 4.124 21 C -0.146 4.146 22 C -0.209 4.209 23 S 0.092 5.908 24 C -0.127 4.127 25 C 0.177 3.823 26 H 0.251 0.749 27 H 0.004 0.996 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.417 0.583 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.186 0.814 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.064 0.936 43 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 -26.441 17.217 31.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.393 4.393 8 H 0.086 0.914 9 N -0.332 5.332 10 C 0.017 3.983 11 C -0.163 4.163 12 C 0.058 3.942 13 N -0.357 5.357 14 C 0.308 3.692 15 O -0.450 6.450 16 C -0.263 4.263 17 S -0.013 6.013 18 C -0.166 4.166 19 C -0.301 4.301 20 C -0.157 4.157 21 C -0.176 4.176 22 C -0.346 4.346 23 S 0.356 5.644 24 C -0.167 4.167 25 C 0.051 3.949 26 H 0.060 0.940 27 H 0.022 0.978 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.254 0.746 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.139 0.861 36 H 0.124 0.876 37 H 0.171 0.829 38 H 0.179 0.821 39 H 0.203 0.797 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 1.393 -26.440 15.969 30.920 hybrid contribution 1.818 1.202 0.423 2.220 sum 3.211 -25.238 16.392 30.265 Atomic orbital electron populations 1.70193 1.06728 1.25908 1.55381 1.25833 0.96047 1.01579 1.01095 0.85180 0.78621 0.79673 0.76782 1.19026 1.22201 1.21353 1.19558 0.92875 0.85804 1.41045 0.91447 1.44351 1.35955 1.02143 1.50749 1.20964 0.97286 0.86070 0.93962 1.22213 0.97827 0.98529 0.97735 1.20703 0.97078 0.88411 0.87978 1.45919 1.68446 1.05416 1.15901 1.20290 0.76661 0.83327 0.88885 1.90759 1.47385 1.78576 1.28288 1.23479 1.09222 0.93218 1.00390 1.88282 1.90509 1.01460 1.21057 1.21861 1.06954 0.90199 0.97630 1.23848 0.97455 0.98209 1.10629 1.20463 1.01584 0.93145 1.00556 1.20458 0.95755 0.97977 1.03370 1.26018 0.98999 1.02049 1.07500 1.84433 1.12750 1.03049 1.64209 1.22242 1.02121 0.93454 0.98849 1.20581 0.87671 0.97865 0.88818 0.94010 0.97778 0.92424 0.92335 0.91190 0.92741 0.74564 0.83963 0.84210 0.86119 0.87636 0.82885 0.82096 0.79707 0.90800 0.90372 0.91787 0.98927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.17 11.20 21.65 0.24 -54.93 16 2 C -0.05 -2.78 4.92 84.86 0.42 -2.37 16 3 Si 0.97 44.32 29.59 68.60 2.03 46.35 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.26 -14.39 9.58 84.03 0.81 -13.58 16 8 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 9 N -0.61 -30.68 2.99 -699.08 -2.09 -32.77 16 10 C 0.14 6.26 6.50 86.36 0.56 6.82 16 11 C -0.12 -4.34 5.68 30.77 0.17 -4.17 16 12 C 0.16 5.41 2.42 45.12 0.11 5.52 16 13 N -0.70 -16.88 5.08 -441.91 -2.24 -19.12 16 14 C 0.52 13.68 7.81 87.66 0.68 14.37 16 15 O -0.57 -21.26 15.53 -3.06 -0.05 -21.31 16 16 C -0.11 -1.80 6.42 71.24 0.46 -1.35 16 17 S -0.24 -5.22 20.86 -56.49 -1.18 -6.40 16 18 C -0.02 -0.23 6.43 71.23 0.46 0.23 16 19 C -0.18 -2.86 5.77 24.59 0.14 -2.72 16 20 C -0.12 -1.78 10.05 21.22 0.21 -1.56 16 21 C -0.15 -1.84 10.18 21.22 0.22 -1.63 16 22 C -0.21 -2.65 11.23 66.72 0.75 -1.90 16 23 S 0.09 1.42 23.33 -56.49 -1.32 0.10 16 24 C -0.13 -4.37 5.55 30.67 0.17 -4.20 16 25 C 0.18 8.40 5.30 86.36 0.46 8.86 16 26 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.05 2.15 7.58 -2.39 -0.02 2.14 16 32 H 0.42 6.71 8.60 -92.71 -0.80 5.91 16 33 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.19 1.42 8.06 -2.91 -0.02 1.39 16 40 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.06 3.39 6.06 -2.39 -0.01 3.38 16 43 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 Total: -1.00 -73.96 379.70 1.22 -72.74 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.21 Total: 13.03 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 5.62 Total: 2.32 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -4.09 Total: -106.82 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.05 Total: -21.31 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -2.50 Total: -6.30 kcal Total: -73.96 1.22 -72.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701267861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.684 kcal (2) G-P(sol) polarization free energy of solvation -73.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds