Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48497 * 109.46784 * 239.99726 * 3 2 1 5 5 H 1.48499 * 109.47335 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46923 * 119.99939 * 3 2 1 7 7 C 1.38655 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99423 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.35759 * 116.99874 * 185.05617 * 9 7 2 11 11 C 1.38881 * 120.06711 * 354.45976 * 10 9 7 12 12 C 1.38095 * 119.92738 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.07215 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93386 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.46953 * 89.99991 * 14 13 12 16 16 N 1.28726 * 125.34779 * 269.97877 * 15 14 13 17 17 N 1.28987 * 108.95034 * 180.02562 * 16 15 14 18 18 C 1.34047 * 107.26369 * 359.97438 * 17 16 15 19 19 C 1.48469 * 126.67366 * 180.02562 * 18 17 16 20 20 C 1.39330 * 120.10244 * 359.97110 * 19 18 17 21 21 C 1.38014 * 119.93144 * 179.97438 * 20 19 18 22 22 C 1.38298 * 120.14486 * 359.97438 * 21 20 19 23 23 C 1.38508 * 120.21155 * 0.02562 * 22 21 20 24 24 F 1.35106 * 119.96779 * 180.02562 * 23 22 21 25 25 C 1.38280 * 120.06582 * 359.74786 * 23 22 21 26 26 N 1.28881 * 125.33902 * 90.00078 * 15 14 13 27 27 C 1.38298 * 120.13808 * 0.25375 * 13 12 11 28 28 C 1.38109 * 120.06577 * 359.44747 * 27 13 12 29 29 H 0.96997 * 120.00220 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.03513 * 0.02562 * 11 10 9 31 31 H 1.08004 * 119.96847 * 180.02562 * 12 11 10 32 32 H 1.08998 * 109.46820 * 330.00729 * 14 13 12 33 33 H 1.09002 * 109.47223 * 210.00052 * 14 13 12 34 34 H 1.08005 * 120.03101 * 359.96352 * 20 19 18 35 35 H 1.08008 * 119.92698 * 180.02562 * 21 20 19 36 36 H 1.08008 * 119.89224 * 180.02562 * 22 21 20 37 37 H 1.07996 * 120.07356 * 180.27534 * 25 23 22 38 38 H 1.07995 * 119.97148 * 179.70286 * 27 13 12 39 39 H 1.07998 * 120.03335 * 180.27331 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6962 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6963 1.2126 7 6 2.0087 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3345 -2.3684 0.0005 10 6 2.0698 -3.5047 0.1077 11 6 3.4570 -3.4395 0.0951 12 6 4.2021 -4.5972 0.2038 13 6 3.5683 -5.8205 0.3245 14 6 4.3844 -7.0819 0.4422 15 7 4.6551 -7.3582 1.8552 16 7 5.6756 -6.9333 2.5149 17 7 5.5983 -7.3632 3.7286 18 6 4.4749 -8.0885 3.8230 19 6 3.9670 -8.7832 5.0328 20 6 4.6806 -8.7175 6.2277 21 6 4.2048 -9.3641 7.3503 22 6 3.0211 -10.0768 7.2920 23 6 2.3069 -10.1461 6.1073 24 9 1.1507 -10.8432 6.0560 25 6 2.7730 -9.4976 4.9784 26 7 3.9090 -8.0651 2.6328 27 6 2.1870 -5.8892 0.3315 28 6 1.4363 -4.7345 0.2294 29 1 -0.4850 0.8400 0.0004 30 1 3.9525 -2.4846 0.0005 31 1 5.2809 -4.5473 0.1945 32 1 5.3271 -6.9557 -0.0903 33 1 3.8307 -7.9147 0.0087 34 1 5.6051 -8.1612 6.2753 35 1 4.7579 -9.3128 8.2767 36 1 2.6523 -10.5810 8.1731 37 1 2.2140 -9.5478 4.0558 38 1 1.6949 -6.8463 0.4210 39 1 0.3577 -4.7883 0.2394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731156490.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = 108.041151 kcal Electronic energy + Delta-G solvation = -26908.304520 eV Core-core repulsion = 22734.502454 eV Total energy + Delta-G solvation = -4173.802066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.13779 -44.21566 -39.34812 -39.19433 -37.15032 -34.94290 -33.55292 -32.55591 -31.53355 -30.93790 -30.40689 -29.93067 -26.80010 -25.39764 -24.73786 -23.56481 -22.26698 -22.25966 -21.80652 -20.81623 -18.37137 -18.19467 -17.45591 -17.23688 -16.80071 -16.48951 -16.40700 -15.83969 -15.21569 -14.89875 -14.80810 -14.56717 -14.08576 -13.94462 -13.84141 -13.71718 -13.39604 -13.14673 -12.91321 -12.87523 -12.52242 -12.18858 -11.88303 -11.73625 -11.65714 -11.53109 -11.44508 -11.02245 -10.92572 -10.90350 -10.84704 -10.57967 -10.50672 -9.55008 -9.20902 -9.02016 -8.86848 -8.42078 -7.51632 -6.63351 -4.21874 0.45083 0.87272 1.31625 1.59848 2.02328 2.28686 2.43478 3.03755 3.05694 3.08199 3.39311 3.50882 3.82677 3.93157 4.20900 4.34768 4.55105 4.61088 4.82476 4.83057 4.84544 4.92413 5.03594 5.06407 5.15271 5.23355 5.48162 5.53101 5.58793 5.70588 5.73247 5.82052 5.99042 5.99853 6.07947 6.17153 6.23930 6.43756 6.50229 6.65436 6.81756 6.97620 7.09629 7.22643 7.56204 7.80800 8.38385 8.81183 9.46506 10.53399 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.002261 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.592662 B =12379.980092 C =12845.596531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.395 4.395 8 H 0.095 0.905 9 O -0.165 6.165 10 C 0.167 3.833 11 C -0.239 4.239 12 C -0.036 4.036 13 C -0.241 4.241 14 C 0.184 3.816 15 N -0.115 5.115 16 N -0.057 5.057 17 N -0.280 5.280 18 C 0.190 3.810 19 C 0.028 3.972 20 C -0.092 4.092 21 C -0.092 4.092 22 C -0.142 4.142 23 C 0.097 3.903 24 F -0.137 7.137 25 C -0.120 4.120 26 N -0.291 5.291 27 C -0.040 4.040 28 C -0.197 4.197 29 H 0.274 0.726 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.116 0.884 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.434 -17.975 8.439 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.471 4.471 8 H 0.113 0.887 9 O -0.067 6.067 10 C 0.111 3.889 11 C -0.258 4.258 12 C -0.055 4.055 13 C -0.244 4.244 14 C 0.067 3.933 15 N -0.029 5.029 16 N -0.049 5.049 17 N -0.151 5.151 18 C -0.090 4.090 19 C 0.024 3.976 20 C -0.112 4.112 21 C -0.110 4.110 22 C -0.161 4.161 23 C 0.078 3.922 24 F -0.115 7.115 25 C -0.140 4.140 26 N -0.142 5.142 27 C -0.059 4.059 28 C -0.217 4.217 29 H 0.084 0.916 30 H 0.149 0.851 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.164 0.836 38 H 0.134 0.866 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.365 -17.359 7.919 20.833 hybrid contribution -0.151 0.553 0.140 0.590 sum 8.214 -16.806 8.060 20.369 Atomic orbital electron populations 1.70021 1.06093 1.28296 1.44358 1.25366 0.95900 0.99086 0.96024 0.85730 0.78771 0.79309 0.79413 1.19263 1.20069 1.19278 1.21371 0.91974 0.80595 1.53167 0.88747 1.83975 1.34704 1.11679 1.76313 1.19478 0.90361 0.88038 0.90988 1.21142 0.93724 0.98975 1.11996 1.20656 0.98660 0.91415 0.94777 1.18967 0.93629 0.92728 1.19073 1.21112 1.02411 0.98523 0.71234 1.50764 1.11343 1.27711 1.13055 1.78882 1.09963 1.17016 0.99066 1.75962 1.17679 1.12289 1.09166 1.23364 0.92099 1.00931 0.92585 1.16984 0.94345 0.97093 0.89150 1.21293 1.00304 0.98618 0.90968 1.20955 0.95226 0.96113 0.98701 1.21301 0.96201 1.01534 0.97107 1.17461 0.84088 0.95872 0.94766 1.91526 1.46225 1.76701 1.97059 1.21146 0.96350 0.97658 0.98895 1.74832 1.21544 1.15767 1.02082 1.20524 0.92425 0.97213 0.95730 1.20202 0.99832 0.90099 1.11519 0.91595 0.85091 0.86861 0.86430 0.86630 0.83933 0.84176 0.84354 0.83616 0.86570 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.23 13.67 55.48 0.76 -23.47 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 19.77 29.55 -169.99 -5.02 14.75 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.40 -10.62 9.49 30.89 0.29 -10.33 16 8 H 0.10 2.33 5.20 -52.48 -0.27 2.05 16 9 O -0.17 -4.53 9.76 0.03 0.00 -4.53 16 10 C 0.17 3.85 6.65 -39.11 -0.26 3.59 16 11 C -0.24 -4.90 9.17 -39.40 -0.36 -5.26 16 12 C -0.04 -0.61 9.69 -39.61 -0.38 -0.99 16 13 C -0.24 -3.71 5.47 -104.58 -0.57 -4.28 16 14 C 0.18 2.16 6.72 -5.19 -0.03 2.13 16 15 N -0.12 -1.66 3.98 -11.68 -0.05 -1.70 16 16 N -0.06 -0.89 13.23 60.35 0.80 -0.09 16 17 N -0.28 -4.37 12.23 32.16 0.39 -3.97 16 18 C 0.19 2.75 7.94 -156.30 -1.24 1.51 16 19 C 0.03 0.33 5.87 -104.90 -0.62 -0.29 16 20 C -0.09 -0.88 9.70 -39.26 -0.38 -1.27 16 21 C -0.09 -0.68 10.03 -39.64 -0.40 -1.08 16 22 C -0.14 -1.13 10.02 -39.46 -0.40 -1.53 16 23 C 0.10 0.98 7.29 -39.47 -0.29 0.70 16 24 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 25 C -0.12 -1.33 9.68 -39.19 -0.38 -1.71 16 26 N -0.29 -4.30 11.85 32.17 0.38 -3.91 16 27 C -0.04 -0.66 9.69 -39.61 -0.38 -1.04 16 28 C -0.20 -3.94 9.99 -39.39 -0.39 -4.33 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 31 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.12 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.12 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.14 1.29 7.89 -52.48 -0.41 0.87 16 35 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 36 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 37 H 0.15 1.61 7.88 -52.49 -0.41 1.20 16 38 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -31.30 357.13 -6.69 -37.99 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -3.49 Total: 4.17 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -5.89 Total: -23.17 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 2.29 Total: -33.16 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: 0.00 Total: -4.53 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.30 -6.69 -37.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731156490.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.033 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds