Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48497 * 109.46784 * 239.99726 * 3 2 1 5 5 H 1.48499 * 109.47335 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46923 * 119.99939 * 3 2 1 7 7 C 1.38655 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99423 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.35759 * 116.99874 * 185.05617 * 9 7 2 11 11 C 1.38881 * 120.06711 * 354.45976 * 10 9 7 12 12 C 1.38095 * 119.92738 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.07215 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93386 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.46953 * 89.99991 * 14 13 12 16 16 N 1.28726 * 125.34779 * 269.97877 * 15 14 13 17 17 N 1.28987 * 108.95034 * 180.02562 * 16 15 14 18 18 C 1.34047 * 107.26369 * 359.97438 * 17 16 15 19 19 C 1.48469 * 126.67366 * 180.02562 * 18 17 16 20 20 C 1.39330 * 120.10244 * 359.97110 * 19 18 17 21 21 C 1.38014 * 119.93144 * 179.97438 * 20 19 18 22 22 C 1.38298 * 120.14486 * 359.97438 * 21 20 19 23 23 C 1.38508 * 120.21155 * 0.02562 * 22 21 20 24 24 F 1.35106 * 119.96779 * 180.02562 * 23 22 21 25 25 C 1.38280 * 120.06582 * 359.74786 * 23 22 21 26 26 N 1.28881 * 125.33902 * 90.00078 * 15 14 13 27 27 C 1.38298 * 120.13808 * 0.25375 * 13 12 11 28 28 C 1.38109 * 120.06577 * 359.44747 * 27 13 12 29 29 H 0.96997 * 120.00220 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.03513 * 0.02562 * 11 10 9 31 31 H 1.08004 * 119.96847 * 180.02562 * 12 11 10 32 32 H 1.08998 * 109.46820 * 330.00729 * 14 13 12 33 33 H 1.09002 * 109.47223 * 210.00052 * 14 13 12 34 34 H 1.08005 * 120.03101 * 359.96352 * 20 19 18 35 35 H 1.08008 * 119.92698 * 180.02562 * 21 20 19 36 36 H 1.08008 * 119.89224 * 180.02562 * 22 21 20 37 37 H 1.07996 * 120.07356 * 180.27534 * 25 23 22 38 38 H 1.07995 * 119.97148 * 179.70286 * 27 13 12 39 39 H 1.07998 * 120.03335 * 180.27331 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6962 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6963 1.2126 7 6 2.0087 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3345 -2.3684 0.0005 10 6 2.0698 -3.5047 0.1077 11 6 3.4570 -3.4395 0.0951 12 6 4.2021 -4.5972 0.2038 13 6 3.5683 -5.8205 0.3245 14 6 4.3844 -7.0819 0.4422 15 7 4.6551 -7.3582 1.8552 16 7 5.6756 -6.9333 2.5149 17 7 5.5983 -7.3632 3.7286 18 6 4.4749 -8.0885 3.8230 19 6 3.9670 -8.7832 5.0328 20 6 4.6806 -8.7175 6.2277 21 6 4.2048 -9.3641 7.3503 22 6 3.0211 -10.0768 7.2920 23 6 2.3069 -10.1461 6.1073 24 9 1.1507 -10.8432 6.0560 25 6 2.7730 -9.4976 4.9784 26 7 3.9090 -8.0651 2.6328 27 6 2.1870 -5.8892 0.3315 28 6 1.4363 -4.7345 0.2294 29 1 -0.4850 0.8400 0.0004 30 1 3.9525 -2.4846 0.0005 31 1 5.2809 -4.5473 0.1945 32 1 5.3271 -6.9557 -0.0903 33 1 3.8307 -7.9147 0.0087 34 1 5.6051 -8.1612 6.2753 35 1 4.7579 -9.3128 8.2767 36 1 2.6523 -10.5810 8.1731 37 1 2.2140 -9.5478 4.0558 38 1 1.6949 -6.8463 0.4210 39 1 0.3577 -4.7883 0.2394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731156490.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = 89.900627 kcal Electronic energy + Delta-G solvation = -26909.091152 eV Core-core repulsion = 22734.502454 eV Total energy + Delta-G solvation = -4174.588698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.92771 -45.32797 -40.93976 -39.97906 -38.72290 -36.15339 -34.59286 -34.39206 -32.65306 -31.92831 -31.71359 -31.04066 -28.21472 -27.14216 -25.69374 -24.56846 -23.77153 -23.23913 -22.76124 -22.21902 -19.97817 -19.30343 -18.94976 -18.40261 -18.02373 -17.23379 -17.15925 -16.63599 -16.56350 -16.42124 -16.05436 -15.95493 -15.64461 -15.23207 -15.04115 -14.74144 -14.61202 -14.37725 -14.20671 -13.85294 -13.67047 -13.53544 -13.13923 -13.00995 -12.89053 -12.74304 -12.57805 -12.44184 -12.33664 -12.19015 -12.03834 -11.99724 -11.59036 -11.29570 -10.87537 -9.97083 -9.92350 -9.67589 -9.18150 -8.54769 -6.23800 -0.37823 0.11769 0.14697 0.33939 0.48380 1.20592 1.30300 1.32654 1.44265 1.48855 2.12686 2.54676 2.63262 2.74889 3.03284 3.07581 3.37418 3.39548 3.63397 3.74999 3.89783 3.94650 4.03875 4.10101 4.14290 4.28428 4.32121 4.39025 4.46854 4.58260 4.68856 4.79688 4.90117 5.00928 5.04855 5.07040 5.14175 5.14989 5.27600 5.36479 5.40158 5.55086 5.59059 5.80460 5.93678 6.03414 6.89348 7.25413 7.65598 8.67476 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.002261 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.592662 B =12379.980092 C =12845.596531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.019 4.019 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.418 4.418 8 H 0.105 0.895 9 O -0.224 6.224 10 C 0.131 3.869 11 C -0.249 4.249 12 C -0.034 4.034 13 C -0.210 4.210 14 C 0.179 3.821 15 N -0.115 5.115 16 N -0.069 5.069 17 N -0.296 5.296 18 C 0.190 3.810 19 C 0.000 4.000 20 C -0.093 4.093 21 C -0.080 4.080 22 C -0.129 4.129 23 C 0.083 3.917 24 F -0.144 7.144 25 C -0.128 4.128 26 N -0.302 5.302 27 C -0.032 4.032 28 C -0.212 4.212 29 H 0.275 0.725 30 H 0.123 0.877 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.178 0.822 36 H 0.167 0.833 37 H 0.138 0.862 38 H 0.152 0.848 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.109 -20.536 9.899 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.218 4.218 3 Si 0.837 3.163 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.494 4.494 8 H 0.122 0.878 9 O -0.129 6.129 10 C 0.079 3.921 11 C -0.269 4.269 12 C -0.053 4.053 13 C -0.213 4.213 14 C 0.063 3.937 15 N -0.029 5.029 16 N -0.061 5.061 17 N -0.166 5.166 18 C -0.089 4.089 19 C -0.003 4.003 20 C -0.113 4.113 21 C -0.097 4.097 22 C -0.148 4.148 23 C 0.063 3.937 24 F -0.123 7.123 25 C -0.149 4.149 26 N -0.153 5.153 27 C -0.051 4.051 28 C -0.231 4.231 29 H 0.084 0.916 30 H 0.141 0.859 31 H 0.165 0.835 32 H 0.171 0.829 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.195 0.805 36 H 0.185 0.815 37 H 0.156 0.844 38 H 0.169 0.831 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.081 -19.983 9.378 24.699 hybrid contribution -0.827 0.848 -0.192 1.200 sum 10.255 -19.135 9.185 23.573 Atomic orbital electron populations 1.70164 1.08077 1.29165 1.47930 1.26622 0.96842 1.02828 0.95475 0.84655 0.77464 0.74149 0.80045 1.17802 1.19529 1.18311 1.21830 0.92646 0.81246 1.53661 0.87810 1.83951 1.36160 1.12731 1.80083 1.20050 0.91720 0.87992 0.92374 1.21267 0.92992 1.00259 1.12357 1.21044 1.00256 0.90629 0.93343 1.19426 0.93596 0.94031 1.14200 1.21478 1.04175 0.97471 0.70544 1.50779 1.11090 1.27558 1.13459 1.78828 1.10556 1.17409 0.99356 1.75935 1.18416 1.12976 1.09303 1.23837 0.91570 1.00280 0.93223 1.17122 0.95359 0.98545 0.89280 1.21495 1.00261 0.98621 0.90900 1.21358 0.94833 0.94317 0.99217 1.21682 0.95632 1.00433 0.97058 1.17655 0.84303 0.96299 0.95409 1.91507 1.46717 1.76914 1.97134 1.21108 0.96358 0.98234 0.99235 1.74836 1.21737 1.16322 1.02413 1.20943 0.93055 0.97313 0.93779 1.20461 1.00232 0.90448 1.11945 0.91599 0.85885 0.83491 0.82919 0.83184 0.83515 0.80455 0.81498 0.84399 0.83061 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.43 13.67 21.61 0.30 -55.13 16 2 C -0.02 -1.07 5.49 84.83 0.47 -0.61 16 3 Si 1.02 41.99 29.55 68.60 2.03 44.02 16 4 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 7 C -0.42 -23.84 9.49 67.92 0.64 -23.20 16 8 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 9 O -0.22 -13.18 9.76 -22.81 -0.22 -13.41 16 10 C 0.13 6.28 6.65 22.58 0.15 6.43 16 11 C -0.25 -10.34 9.17 22.39 0.21 -10.13 16 12 C -0.03 -1.08 9.69 22.25 0.22 -0.86 16 13 C -0.21 -5.77 5.47 -19.83 -0.11 -5.88 16 14 C 0.18 3.38 6.72 85.63 0.58 3.95 16 15 N -0.11 -2.94 3.98 -190.85 -0.76 -3.69 16 16 N -0.07 -1.99 13.23 37.02 0.49 -1.50 16 17 N -0.30 -8.70 12.23 -52.18 -0.64 -9.34 16 18 C 0.19 5.22 7.94 137.38 1.09 6.31 16 19 C 0.00 0.01 5.87 -20.05 -0.12 -0.11 16 20 C -0.09 -1.57 9.70 22.48 0.22 -1.35 16 21 C -0.08 -0.89 10.03 22.23 0.22 -0.66 16 22 C -0.13 -1.62 10.02 22.35 0.22 -1.40 16 23 C 0.08 1.52 7.29 22.34 0.16 1.68 16 24 F -0.14 -2.93 17.27 44.97 0.78 -2.16 16 25 C -0.13 -2.73 9.68 22.52 0.22 -2.51 16 26 N -0.30 -8.22 11.85 -52.13 -0.62 -8.84 16 27 C -0.03 -1.00 9.69 22.25 0.22 -0.78 16 28 C -0.21 -8.61 9.99 22.39 0.22 -8.39 16 29 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.12 5.21 5.64 -2.91 -0.02 5.19 16 31 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.15 1.94 8.08 -2.39 -0.02 1.92 16 33 H 0.15 1.92 8.08 -2.39 -0.02 1.90 16 34 H 0.15 2.33 7.89 -2.91 -0.02 2.31 16 35 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 36 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 37 H 0.14 3.01 7.88 -2.91 -0.02 2.99 16 38 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 39 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -75.23 357.13 7.07 -68.16 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 1.12 Total: 19.40 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 4.61 Total: -37.51 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -1.23 Total: -78.51 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.22 Total: -13.41 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -75.23 7.07 -68.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731156490.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.061 kcal (2) G-P(sol) polarization free energy of solvation -75.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds