Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86790 * 120.00057 * 2 1 4 4 H 1.48503 * 109.47057 * 269.99999 * 3 2 1 5 5 H 1.48496 * 109.47291 * 30.00130 * 3 2 1 6 6 H 1.48498 * 109.47297 * 150.00162 * 3 2 1 7 7 C 1.38634 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00161 * 0.02562 * 7 2 1 9 9 O 1.34806 * 120.00247 * 179.97438 * 7 2 1 10 10 C 1.35774 * 117.00560 * 174.65650 * 9 7 2 11 11 C 1.38733 * 120.08412 * 354.14714 * 10 9 7 12 12 C 1.38348 * 119.97838 * 179.97438 * 11 10 9 13 13 F 1.35098 * 119.92550 * 180.02562 * 12 11 10 14 14 C 1.38554 * 120.15272 * 359.97438 * 12 11 10 15 15 C 1.38189 * 120.17351 * 0.25805 * 14 12 11 16 16 C 1.38710 * 120.02402 * 359.48459 * 15 14 12 17 17 N 1.40071 * 120.07870 * 180.23286 * 16 15 14 18 18 C 1.34774 * 120.00330 * 318.32934 * 17 16 15 19 19 S 1.71204 * 119.99791 * 5.22322 * 18 17 16 20 20 N 1.34775 * 120.00249 * 185.22542 * 18 17 16 21 21 C 1.46506 * 120.00055 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47234 * 179.97438 * 21 20 18 23 23 H 1.08997 * 110.80458 * 305.70476 * 22 21 20 24 24 C 1.54813 * 110.90899 * 182.07118 * 22 21 20 25 25 C 1.54094 * 104.18985 * 220.92085 * 24 22 21 26 26 O 1.43752 * 107.29251 * 357.97045 * 25 24 22 27 27 C 1.44423 * 107.00062 * 26.49126 * 26 25 24 28 28 H 0.96993 * 120.00162 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.01433 * 0.02562 * 11 10 9 30 30 H 1.07996 * 119.91205 * 179.97438 * 14 12 11 31 31 H 1.08003 * 119.98689 * 179.74231 * 15 14 12 32 32 H 0.97000 * 120.00377 * 138.32992 * 17 16 15 33 33 H 0.96993 * 120.00226 * 0.02562 * 20 18 17 34 34 H 1.09004 * 109.47108 * 299.99898 * 21 20 18 35 35 H 1.09001 * 109.46999 * 59.99905 * 21 20 18 36 36 H 1.08993 * 110.48552 * 339.60326 * 24 22 21 37 37 H 1.09004 * 110.48538 * 102.11182 * 24 22 21 38 38 H 1.09000 * 109.87926 * 117.39002 * 25 24 22 39 39 H 1.08998 * 109.87972 * 238.54859 * 25 24 22 40 40 H 1.09000 * 110.64604 * 201.48368 * 27 26 25 41 41 H 1.08992 * 110.60461 * 78.46614 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0005 9 8 3.3569 -1.2007 0.0000 10 6 3.9734 -2.4051 0.1132 11 6 3.2252 -3.5503 0.3444 12 6 3.8555 -4.7765 0.4589 13 9 3.1258 -5.8911 0.6834 14 6 5.2334 -4.8643 0.3427 15 6 5.9852 -3.7270 0.1172 16 6 5.3603 -2.4946 -0.0041 17 7 6.1208 -1.3417 -0.2375 18 6 7.2831 -1.1567 0.4193 19 16 7.8968 -2.3890 1.4370 20 7 7.9622 -0.0015 0.2750 21 6 9.2253 0.1999 0.9894 22 6 9.7866 1.5829 0.6531 23 1 9.8753 1.7129 -0.4254 24 6 11.1495 1.8106 1.3511 25 6 11.0850 3.2710 1.8385 26 8 9.8260 3.8115 1.4033 27 6 8.9116 2.7010 1.2749 28 1 -0.4850 0.8400 0.0004 29 1 2.1508 -3.4848 0.4341 30 1 5.7215 -5.8234 0.4331 31 1 7.0595 -3.7983 0.0313 32 1 5.8111 -0.6765 -0.8719 33 1 7.6143 0.6969 -0.3013 34 1 9.0507 0.1294 2.0631 35 1 9.9400 -0.5654 0.6865 36 1 11.2638 1.1312 2.1957 37 1 11.9676 1.6785 0.6430 38 1 11.1452 3.3017 2.9264 39 1 11.9042 3.8435 1.4035 40 1 8.0867 2.9573 0.6100 41 1 8.5378 2.3969 2.2525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749735640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = -66.934966 kcal Electronic energy + Delta-G solvation = -26685.698721 eV Core-core repulsion = 22607.460321 eV Total energy + Delta-G solvation = -4078.238400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.34836 -40.23417 -39.82890 -38.40990 -36.83222 -35.22010 -32.79244 -32.59617 -30.02294 -29.67232 -28.55751 -26.06158 -25.53765 -24.12293 -22.88163 -22.07047 -21.76279 -21.02851 -18.71531 -18.36833 -18.17216 -17.44650 -16.96066 -16.16419 -15.84104 -15.72623 -15.59645 -15.40445 -15.08237 -14.87150 -14.82996 -14.23265 -14.08382 -13.87172 -13.63074 -13.34747 -13.29915 -12.77449 -12.53947 -12.28932 -12.15956 -11.88536 -11.83816 -11.52959 -11.33054 -11.15379 -11.05677 -10.91580 -10.79395 -10.58004 -10.10202 -9.81827 -9.62088 -9.10731 -8.23521 -7.86584 -7.41747 -6.85243 -6.64091 -4.32211 1.20287 1.82951 2.03447 2.08599 2.59069 2.99997 3.04511 3.12705 3.46653 3.51323 3.98464 4.01365 4.16524 4.21675 4.37646 4.42295 4.62404 4.78437 4.81120 4.85488 4.91827 5.14649 5.29827 5.32551 5.36534 5.39748 5.45692 5.51167 5.64784 5.67065 5.73684 5.87807 6.11826 6.41782 6.42023 6.51170 6.74100 6.78413 6.84488 7.02800 7.32305 7.41916 7.58194 7.78322 8.68320 9.21623 10.43030 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009639 B = 0.003796 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.069021 B = 7374.595752 C =10065.821340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.068 3.932 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.393 4.393 8 H 0.111 0.889 9 O -0.209 6.209 10 C 0.185 3.815 11 C -0.257 4.257 12 C 0.151 3.849 13 F -0.146 7.146 14 C -0.232 4.232 15 C 0.001 3.999 16 C 0.021 3.979 17 N -0.597 5.597 18 C 0.557 3.443 19 S -0.638 6.638 20 N -0.691 5.691 21 C 0.139 3.861 22 C -0.139 4.139 23 H 0.093 0.907 24 C -0.145 4.145 25 C 0.046 3.954 26 O -0.377 6.377 27 C 0.047 3.953 28 H 0.283 0.717 29 H 0.150 0.850 30 H 0.128 0.872 31 H 0.161 0.839 32 H 0.407 0.593 33 H 0.397 0.603 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.114 4.146 -1.329 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.468 4.468 8 H 0.128 0.872 9 O -0.113 6.113 10 C 0.129 3.871 11 C -0.278 4.278 12 C 0.131 3.869 13 F -0.125 7.125 14 C -0.253 4.253 15 C -0.022 4.022 16 C -0.073 4.073 17 N -0.218 5.218 18 C 0.197 3.803 19 S -0.508 6.508 20 N -0.322 5.322 21 C 0.015 3.985 22 C -0.158 4.158 23 H 0.112 0.888 24 C -0.183 4.183 25 C -0.031 4.031 26 O -0.296 6.296 27 C -0.029 4.029 28 H 0.093 0.907 29 H 0.167 0.833 30 H 0.146 0.854 31 H 0.178 0.822 32 H 0.245 0.755 33 H 0.233 0.767 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.406 3.904 -0.601 19.804 hybrid contribution -0.782 1.593 -0.876 1.979 sum 18.624 5.498 -1.478 19.475 Atomic orbital electron populations 1.69633 1.05545 1.28825 1.46417 1.24468 0.95039 0.98754 0.95457 0.86219 0.80348 0.81689 0.78822 1.19731 1.20412 1.18680 1.20785 0.76272 0.96966 1.52772 0.87186 1.83522 1.23292 1.24949 1.79515 1.18505 0.89373 0.85966 0.93223 1.20919 1.02131 0.90475 1.14313 1.17593 0.89206 0.81822 0.98296 1.91439 1.77947 1.51169 1.91950 1.20522 0.91256 0.99459 1.14110 1.21154 1.01264 0.88418 0.91336 1.16553 0.86517 0.85291 1.18921 1.41886 1.18234 1.22223 1.39500 1.22256 0.83844 0.88631 0.85526 1.93231 1.73948 1.37361 1.46256 1.44881 1.24255 1.14711 1.48321 1.21660 0.83184 0.95605 0.98050 1.23063 0.96044 0.94743 1.01943 0.88831 1.22897 0.96689 0.97356 1.01402 1.23181 0.87138 0.93401 0.99364 1.88903 1.21425 1.30575 1.88710 1.23726 0.92928 0.85563 1.00724 0.90686 0.83277 0.85443 0.82192 0.75518 0.76655 0.89141 0.89006 0.89622 0.89835 0.92050 0.89711 0.88934 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.65 13.96 55.48 0.77 -22.87 16 2 C 0.07 1.76 5.49 -17.52 -0.10 1.67 16 3 Si 0.90 19.65 28.62 -169.99 -4.86 14.78 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.19 9.90 30.88 0.31 -9.89 16 8 H 0.11 2.97 5.53 -52.49 -0.29 2.68 16 9 O -0.21 -4.87 8.26 0.04 0.00 -4.86 16 10 C 0.18 3.90 6.66 -38.94 -0.26 3.64 16 11 C -0.26 -5.40 9.11 -39.36 -0.36 -5.75 16 12 C 0.15 2.87 7.29 -39.42 -0.29 2.58 16 13 F -0.15 -2.73 17.26 2.25 0.04 -2.69 16 14 C -0.23 -4.02 10.02 -39.48 -0.40 -4.42 16 15 C 0.00 0.02 7.88 -39.43 -0.31 -0.29 16 16 C 0.02 0.39 6.07 -83.46 -0.51 -0.11 16 17 N -0.60 -9.14 5.12 -11.26 -0.06 -9.20 16 18 C 0.56 7.97 7.86 -86.92 -0.68 7.29 16 19 S -0.64 -11.12 24.50 -107.50 -2.63 -13.75 16 20 N -0.69 -6.95 5.45 -62.03 -0.34 -7.29 16 21 C 0.14 1.19 4.46 -4.04 -0.02 1.17 16 22 C -0.14 -0.92 3.15 -88.61 -0.28 -1.20 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 24 C -0.15 -0.83 6.60 -25.20 -0.17 -0.99 16 25 C 0.05 0.32 7.70 37.73 0.29 0.61 16 26 O -0.38 -3.74 11.52 -35.23 -0.41 -4.15 16 27 C 0.05 0.39 7.02 38.21 0.27 0.66 16 28 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.15 3.30 5.71 -52.48 -0.30 3.00 16 30 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 31 H 0.16 2.70 5.62 -33.94 -0.19 2.51 16 32 H 0.41 5.44 8.75 -40.82 -0.36 5.08 16 33 H 0.40 3.08 8.44 -40.82 -0.34 2.74 16 34 H 0.09 0.90 7.90 -51.93 -0.41 0.49 16 35 H 0.09 0.82 7.99 -51.93 -0.41 0.41 16 36 H 0.09 0.45 7.86 -51.93 -0.41 0.05 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.60 7.98 -51.93 -0.41 0.18 16 LS Contribution 358.09 15.07 5.40 5.40 Total: -1.00 -30.59 358.09 -9.39 -39.97 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -4.80 Total: 9.69 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.50 Total: -5.04 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.38 Total: -39.36 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.41 Total: -9.01 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.69 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.86 Total: 14.78 kcal Atomic # 16 Polarization: -11.12 SS G_CDS: -2.63 Total: -13.75 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.59 -9.39 -39.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749735640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.961 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds