Wall clock time and date at job start Sat Apr 11 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37963 * 120.07324 * 2 1 4 4 C 1.38354 * 120.14758 * 180.22984 * 3 2 1 5 5 C 1.38382 * 120.30208 * 359.49205 * 4 3 2 6 6 S 1.76202 * 119.92621 * 180.27513 * 5 4 3 7 7 C 1.81393 * 104.44968 * 89.99915 * 6 5 4 8 8 O 1.42103 * 104.27977 * 206.07401 * 6 5 4 9 9 O 1.42105 * 104.27522 * 333.92611 * 6 5 4 10 10 C 1.37923 * 120.15105 * 0.25242 * 5 4 3 11 11 C 1.39606 * 120.07989 * 179.72202 * 2 1 3 12 12 C 1.47729 * 120.14806 * 0.02562 * 11 2 1 13 13 O 1.21475 * 119.99761 * 353.78760 * 12 11 2 14 14 O 1.34713 * 120.00143 * 173.79630 * 12 11 2 15 15 C 1.45205 * 116.99929 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46967 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47066 * 299.99862 * 16 15 14 18 18 C 1.53000 * 109.47142 * 59.99850 * 16 15 14 19 19 C 1.50699 * 109.47126 * 179.97438 * 16 15 14 20 20 H 1.08003 * 119.99774 * 0.02562 * 19 16 15 21 21 C 1.37868 * 120.00118 * 180.02562 * 19 16 15 22 22 N 1.31519 * 120.00189 * 359.97438 * 21 19 16 23 23 Si 1.86805 * 120.00148 * 180.02562 * 21 19 16 24 24 H 1.48495 * 109.47048 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47235 * 119.99840 * 23 21 19 26 26 H 1.48500 * 109.47051 * 239.99908 * 23 21 19 27 27 H 1.09004 * 109.47139 * 263.69391 * 1 2 3 28 28 H 1.09001 * 109.47422 * 23.69785 * 1 2 3 29 29 H 1.09000 * 109.47268 * 143.70247 * 1 2 3 30 30 H 1.07996 * 119.93309 * 0.02562 * 3 2 1 31 31 H 1.08004 * 119.84877 * 179.76672 * 4 3 2 32 32 H 1.08997 * 109.47510 * 60.00460 * 7 6 5 33 33 H 1.09002 * 109.47208 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47066 * 299.99727 * 7 6 5 35 35 H 1.08004 * 120.07716 * 179.97438 * 10 5 4 36 36 H 1.09001 * 109.46758 * 299.99309 * 15 14 12 37 37 H 1.08999 * 109.47183 * 59.99607 * 15 14 12 38 38 H 1.08995 * 109.47111 * 59.99855 * 17 16 15 39 39 H 1.09003 * 109.46639 * 180.02562 * 17 16 15 40 40 H 1.08999 * 109.47244 * 300.00084 * 17 16 15 41 41 H 1.09006 * 109.47032 * 59.99515 * 18 16 15 42 42 H 1.08998 * 109.47243 * 180.02562 * 18 16 15 43 43 H 1.09005 * 109.47050 * 300.00227 * 18 16 15 44 44 H 0.96995 * 120.00192 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1939 0.0000 4 6 3.5818 1.1957 -0.0048 5 6 4.2816 0.0019 0.0010 6 16 6.0436 0.0158 0.0021 7 6 6.4950 0.0271 1.7589 8 8 6.4043 -1.2211 -0.5975 9 8 6.3847 1.2528 -0.6085 10 6 3.6031 -1.1989 0.0063 11 6 2.2067 -1.2080 0.0059 12 6 1.4731 -2.4903 0.0115 13 8 0.2637 -2.4976 0.1249 14 8 2.1454 -3.6515 -0.1089 15 6 1.3598 -4.8726 -0.0948 16 6 2.2894 -6.0788 -0.2424 17 6 3.0505 -5.9772 -1.5658 18 6 3.2858 -6.0998 0.9186 19 6 1.4742 -7.3461 -0.2271 20 1 0.4004 -7.2962 -0.1229 21 6 2.0992 -8.5693 -0.3460 22 7 3.4068 -8.6301 -0.4733 23 14 1.0885 -10.1402 -0.3277 24 1 -0.3493 -9.8021 -0.1749 25 1 1.2921 -10.8746 -1.6022 26 1 1.5195 -10.9929 0.8092 27 1 -0.3634 -0.1129 1.0215 28 1 -0.3634 0.9410 -0.4130 29 1 -0.3634 -0.8282 -0.6083 30 1 1.6584 2.1292 0.0004 31 1 4.1182 2.1332 -0.0086 32 1 6.0949 -0.8639 2.2427 33 1 7.5808 0.0366 1.8551 34 1 6.0808 0.9160 2.2347 35 1 4.1504 -2.1299 0.0104 36 1 0.8174 -4.9447 0.8479 37 1 0.6503 -4.8577 -0.9221 38 1 3.6401 -5.0606 -1.5765 39 1 3.7124 -6.8368 -1.6711 40 1 2.3407 -5.9622 -2.3929 41 1 2.7436 -6.1721 1.8614 42 1 3.9484 -6.9589 0.8132 43 1 3.8755 -5.1831 0.9079 44 1 3.8464 -9.4906 -0.5573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764838281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:25 Heat of formation + Delta-G solvation = -131.815529 kcal Electronic energy + Delta-G solvation = -27796.550945 eV Core-core repulsion = 23806.666667 eV Total energy + Delta-G solvation = -3989.884278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.57221 -38.96750 -37.30402 -36.65719 -36.13484 -34.94771 -33.13458 -31.84034 -31.14524 -29.83524 -27.76543 -25.91435 -25.61299 -25.18017 -24.01688 -22.30820 -21.21952 -19.13624 -18.87614 -18.20325 -17.10111 -16.44176 -16.22781 -15.98558 -15.87887 -15.74355 -15.46374 -15.12638 -14.70750 -14.22430 -14.06207 -13.60310 -13.49936 -13.21205 -12.92491 -12.87130 -12.52607 -12.42608 -12.33748 -12.27946 -12.24730 -11.94618 -11.85150 -11.48380 -11.34009 -11.20469 -10.98918 -10.92452 -10.67678 -10.42145 -10.19819 -9.97077 -9.90937 -9.48777 -9.39336 -9.35248 -9.32422 -8.75626 -8.38217 -6.02156 -4.14129 -0.20649 0.36283 0.72685 2.45124 2.62835 3.03495 3.26452 3.32503 3.35051 3.39271 3.69985 3.86033 4.33675 4.38348 4.47020 4.53010 4.60904 4.64470 4.98775 5.10289 5.15794 5.24214 5.33195 5.41627 5.56928 5.57848 5.64107 5.76356 5.96624 6.00979 6.06542 6.21856 6.40739 6.45515 6.73629 6.97790 7.00208 7.12831 7.17265 7.39744 7.62502 7.70018 8.05578 8.07511 8.19726 8.38365 8.85857 9.51555 10.98982 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.003160 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.546543 B = 8859.526243 C =10424.932674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.031 3.969 3 C -0.156 4.156 4 C 0.006 3.994 5 C -0.684 4.684 6 S 2.501 3.499 7 C -0.650 4.650 8 O -0.926 6.926 9 O -0.940 6.940 10 C 0.039 3.961 11 C -0.142 4.142 12 C 0.499 3.501 13 O -0.509 6.509 14 O -0.342 6.342 15 C 0.086 3.914 16 C 0.069 3.931 17 C -0.131 4.131 18 C -0.130 4.130 19 C -0.512 4.512 20 H 0.057 0.943 21 C 0.069 3.931 22 N -0.880 5.880 23 Si 0.895 3.105 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.284 1.284 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.161 0.839 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.019 0.981 39 H 0.085 0.915 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.085 0.915 43 H 0.017 0.983 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 21.426 4.856 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.030 3.970 3 C -0.175 4.175 4 C -0.013 4.013 5 C -0.770 4.770 6 S 2.680 3.320 7 C -0.800 4.800 8 O -0.923 6.923 9 O -0.937 6.937 10 C 0.020 3.980 11 C -0.144 4.144 12 C 0.344 3.656 13 O -0.400 6.400 14 O -0.257 6.257 15 C 0.013 3.987 16 C 0.069 3.931 17 C -0.189 4.189 18 C -0.188 4.188 19 C -0.550 4.550 20 H 0.075 0.925 21 C -0.133 4.133 22 N -0.518 5.518 23 Si 0.723 3.277 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.210 1.210 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.178 0.822 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.103 0.897 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.104 0.896 43 H 0.036 0.964 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.478 21.213 4.147 21.893 hybrid contribution -1.363 -0.923 0.684 1.783 sum 2.114 20.291 4.831 20.965 Atomic orbital electron populations 1.21282 0.89309 1.03878 1.04395 1.20411 0.97360 0.91418 0.87765 1.21134 0.94101 0.97711 1.04561 1.21130 0.94631 0.96746 0.88787 1.30575 1.26405 0.99016 1.20964 1.05209 0.74150 0.74825 0.77799 1.30231 1.12453 1.12262 1.25091 1.93651 1.81478 1.44046 1.73168 1.93577 1.82235 1.44780 1.73118 1.21371 0.93498 0.97721 0.85370 1.19258 0.93571 0.91287 1.10256 1.20960 0.85883 0.85174 0.73621 1.90749 1.14955 1.88079 1.46231 1.86584 1.42402 1.15080 1.81669 1.23753 0.94601 0.79585 1.00742 1.18273 0.92334 0.88671 0.93833 1.21783 0.99869 1.00452 0.96758 1.21780 0.99691 1.00473 0.96818 1.20952 0.93227 0.89800 1.51057 0.92471 1.24853 0.94949 0.98841 0.94678 1.69841 1.07797 1.24843 1.49357 0.86491 0.80397 0.83202 0.77627 1.19811 1.20949 1.20975 0.89644 0.91619 0.87999 0.84206 0.83608 0.84620 0.84905 0.85087 0.82159 0.92340 0.92336 0.96237 0.89660 0.95845 0.95858 0.89640 0.96412 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 8.73 36.00 0.31 -1.12 16 2 C 0.03 0.36 5.91 -104.21 -0.62 -0.25 16 3 C -0.16 -1.42 9.66 -39.64 -0.38 -1.81 16 4 C 0.01 0.05 9.47 -39.49 -0.37 -0.32 16 5 C -0.68 -7.10 5.65 -39.64 -0.22 -7.33 16 6 S 2.50 22.84 5.80 -107.50 -0.62 22.22 16 7 C -0.65 -3.18 10.79 101.05 1.09 -2.09 16 8 O -0.93 -12.51 17.12 -57.54 -0.98 -13.49 16 9 O -0.94 -10.62 17.12 -57.54 -0.98 -11.60 16 10 C 0.04 0.51 9.04 -39.17 -0.35 0.16 16 11 C -0.14 -2.03 5.87 -104.98 -0.62 -2.64 16 12 C 0.50 8.77 7.83 34.61 0.27 9.04 16 13 O -0.51 -9.49 13.14 -19.25 -0.25 -9.74 16 14 O -0.34 -6.75 8.15 -40.53 -0.33 -7.08 16 15 C 0.09 1.87 4.27 37.16 0.16 2.03 16 16 C 0.07 1.69 0.58 -155.66 -0.09 1.60 16 17 C -0.13 -3.18 8.11 37.16 0.30 -2.88 16 18 C -0.13 -3.09 8.11 37.16 0.30 -2.79 16 19 C -0.51 -13.59 8.01 -34.44 -0.28 -13.86 16 20 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 21 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 22 N -0.88 -23.85 9.35 55.43 0.52 -23.33 16 23 Si 0.89 20.74 29.54 -169.99 -5.02 15.71 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.53 8.04 -51.93 -0.42 0.11 16 29 H 0.10 1.35 5.85 -51.93 -0.30 1.05 16 30 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.15 0.91 7.56 -52.48 -0.40 0.51 16 32 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.13 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 35 H 0.16 2.16 7.13 -52.48 -0.37 1.78 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.02 0.43 7.68 -51.93 -0.40 0.03 16 39 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 43 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 44 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 374.03 15.07 5.64 5.64 Total: -1.00 -33.73 374.03 -8.90 -42.62 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.27 Total: -0.40 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -0.59 Total: -20.55 kcal Atomic # 7 Polarization: -23.85 SS G_CDS: 0.52 Total: -23.33 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -2.55 Total: -41.91 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 22.84 SS G_CDS: -0.62 Total: 22.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.73 -8.90 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764838281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.193 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds