Wall clock time and date at job start Sat Apr 11 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37963 * 120.07324 * 2 1 4 4 C 1.38354 * 120.14758 * 180.22984 * 3 2 1 5 5 C 1.38382 * 120.30208 * 359.49205 * 4 3 2 6 6 S 1.76202 * 119.92621 * 180.27513 * 5 4 3 7 7 C 1.81393 * 104.44968 * 89.99915 * 6 5 4 8 8 O 1.42103 * 104.27977 * 206.07401 * 6 5 4 9 9 O 1.42105 * 104.27522 * 333.92611 * 6 5 4 10 10 C 1.37923 * 120.15105 * 0.25242 * 5 4 3 11 11 C 1.39606 * 120.07989 * 179.72202 * 2 1 3 12 12 C 1.47729 * 120.14806 * 0.02562 * 11 2 1 13 13 O 1.21475 * 119.99761 * 353.78760 * 12 11 2 14 14 O 1.34713 * 120.00143 * 173.79630 * 12 11 2 15 15 C 1.45205 * 116.99929 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46967 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47066 * 299.99862 * 16 15 14 18 18 C 1.53000 * 109.47142 * 59.99850 * 16 15 14 19 19 C 1.50699 * 109.47126 * 179.97438 * 16 15 14 20 20 H 1.08003 * 119.99774 * 0.02562 * 19 16 15 21 21 C 1.37868 * 120.00118 * 180.02562 * 19 16 15 22 22 N 1.31519 * 120.00189 * 359.97438 * 21 19 16 23 23 Si 1.86805 * 120.00148 * 180.02562 * 21 19 16 24 24 H 1.48495 * 109.47048 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47235 * 119.99840 * 23 21 19 26 26 H 1.48500 * 109.47051 * 239.99908 * 23 21 19 27 27 H 1.09004 * 109.47139 * 263.69391 * 1 2 3 28 28 H 1.09001 * 109.47422 * 23.69785 * 1 2 3 29 29 H 1.09000 * 109.47268 * 143.70247 * 1 2 3 30 30 H 1.07996 * 119.93309 * 0.02562 * 3 2 1 31 31 H 1.08004 * 119.84877 * 179.76672 * 4 3 2 32 32 H 1.08997 * 109.47510 * 60.00460 * 7 6 5 33 33 H 1.09002 * 109.47208 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47066 * 299.99727 * 7 6 5 35 35 H 1.08004 * 120.07716 * 179.97438 * 10 5 4 36 36 H 1.09001 * 109.46758 * 299.99309 * 15 14 12 37 37 H 1.08999 * 109.47183 * 59.99607 * 15 14 12 38 38 H 1.08995 * 109.47111 * 59.99855 * 17 16 15 39 39 H 1.09003 * 109.46639 * 180.02562 * 17 16 15 40 40 H 1.08999 * 109.47244 * 300.00084 * 17 16 15 41 41 H 1.09006 * 109.47032 * 59.99515 * 18 16 15 42 42 H 1.08998 * 109.47243 * 180.02562 * 18 16 15 43 43 H 1.09005 * 109.47050 * 300.00227 * 18 16 15 44 44 H 0.96995 * 120.00192 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1939 0.0000 4 6 3.5818 1.1957 -0.0048 5 6 4.2816 0.0019 0.0010 6 16 6.0436 0.0158 0.0021 7 6 6.4950 0.0271 1.7589 8 8 6.4043 -1.2211 -0.5975 9 8 6.3847 1.2528 -0.6085 10 6 3.6031 -1.1989 0.0063 11 6 2.2067 -1.2080 0.0059 12 6 1.4731 -2.4903 0.0115 13 8 0.2637 -2.4976 0.1249 14 8 2.1454 -3.6515 -0.1089 15 6 1.3598 -4.8726 -0.0948 16 6 2.2894 -6.0788 -0.2424 17 6 3.0505 -5.9772 -1.5658 18 6 3.2858 -6.0998 0.9186 19 6 1.4742 -7.3461 -0.2271 20 1 0.4004 -7.2962 -0.1229 21 6 2.0992 -8.5693 -0.3460 22 7 3.4068 -8.6301 -0.4733 23 14 1.0885 -10.1402 -0.3277 24 1 -0.3493 -9.8021 -0.1749 25 1 1.2921 -10.8746 -1.6022 26 1 1.5195 -10.9929 0.8092 27 1 -0.3634 -0.1129 1.0215 28 1 -0.3634 0.9410 -0.4130 29 1 -0.3634 -0.8282 -0.6083 30 1 1.6584 2.1292 0.0004 31 1 4.1182 2.1332 -0.0086 32 1 6.0949 -0.8639 2.2427 33 1 7.5808 0.0366 1.8551 34 1 6.0808 0.9160 2.2347 35 1 4.1504 -2.1299 0.0104 36 1 0.8174 -4.9447 0.8479 37 1 0.6503 -4.8577 -0.9221 38 1 3.6401 -5.0606 -1.5765 39 1 3.7124 -6.8368 -1.6711 40 1 2.3407 -5.9622 -2.3929 41 1 2.7436 -6.1721 1.8614 42 1 3.9484 -6.9589 0.8132 43 1 3.8755 -5.1831 0.9079 44 1 3.8464 -9.4906 -0.5573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764838281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:24 Heat of formation + Delta-G solvation = -152.894421 kcal Electronic energy + Delta-G solvation = -27797.464995 eV Core-core repulsion = 23806.666667 eV Total energy + Delta-G solvation = -3990.798327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.81585 -40.09418 -38.27729 -38.13029 -36.97100 -36.70099 -34.01891 -33.36689 -32.55053 -30.28540 -28.67814 -27.60926 -27.59201 -27.11635 -25.15510 -23.24186 -22.35394 -20.75776 -20.06347 -19.18961 -18.31092 -17.83606 -17.47532 -17.15460 -17.11117 -16.96473 -16.62290 -16.30961 -16.01642 -15.22254 -15.11911 -14.88813 -14.62973 -14.36109 -14.00296 -13.90832 -13.72575 -13.44956 -13.32830 -13.25457 -13.20598 -13.15322 -13.10440 -13.08417 -12.84021 -12.82565 -12.59611 -12.35660 -12.14014 -12.07040 -11.76122 -11.69796 -11.39766 -11.30719 -11.07416 -10.74707 -10.41954 -10.33667 -10.19916 -8.04978 -6.23685 -0.87426 -0.54788 -0.17604 1.33640 1.41923 1.44409 1.54103 1.68318 1.90004 2.34739 2.44636 3.02237 3.13698 3.18391 3.51809 3.67689 3.70068 3.97767 4.11969 4.14861 4.22962 4.24311 4.27372 4.39970 4.57039 4.61169 4.69485 4.71716 4.80760 4.85079 4.93421 5.00387 5.02617 5.13799 5.17807 5.20850 5.24402 5.39186 5.53405 5.61692 5.62626 5.68655 6.04945 6.16246 6.35231 6.65830 6.81644 7.44560 8.94951 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.003160 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.546543 B = 8859.526243 C =10424.932674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.022 3.978 3 C -0.144 4.144 4 C 0.015 3.985 5 C -0.681 4.681 6 S 2.506 3.494 7 C -0.625 4.625 8 O -0.981 6.981 9 O -0.964 6.964 10 C 0.023 3.977 11 C -0.168 4.168 12 C 0.494 3.506 13 O -0.526 6.526 14 O -0.351 6.351 15 C 0.099 3.901 16 C 0.060 3.940 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.533 4.533 20 H 0.051 0.949 21 C 0.028 3.972 22 N -0.899 5.899 23 Si 0.954 3.046 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.279 1.279 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.181 0.819 31 H 0.182 0.818 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.144 0.856 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.028 0.972 39 H 0.064 0.936 40 H 0.019 0.981 41 H 0.023 0.977 42 H 0.063 0.937 43 H 0.031 0.969 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.384 24.236 6.126 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.022 3.978 3 C -0.162 4.162 4 C -0.004 4.004 5 C -0.766 4.766 6 S 2.688 3.312 7 C -0.779 4.779 8 O -0.979 6.979 9 O -0.961 6.961 10 C 0.004 3.996 11 C -0.170 4.170 12 C 0.340 3.660 13 O -0.418 6.418 14 O -0.267 6.267 15 C 0.025 3.975 16 C 0.060 3.940 17 C -0.178 4.178 18 C -0.176 4.176 19 C -0.571 4.571 20 H 0.069 0.931 21 C -0.172 4.172 22 N -0.538 5.538 23 Si 0.780 3.220 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.205 1.205 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.198 0.802 31 H 0.199 0.801 32 H 0.163 0.837 33 H 0.173 0.827 34 H 0.182 0.818 35 H 0.162 0.838 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.042 0.958 42 H 0.082 0.918 43 H 0.050 0.950 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.679 24.034 5.376 24.902 hybrid contribution -1.369 -1.641 0.342 2.164 sum 2.310 22.393 5.718 23.227 Atomic orbital electron populations 1.21236 0.88908 1.04393 1.04020 1.20634 0.97837 0.91403 0.87921 1.21574 0.94293 0.98006 1.02296 1.21645 0.94871 0.97368 0.86473 1.30734 1.27085 0.98630 1.20174 1.04971 0.73193 0.73139 0.79887 1.30046 1.14145 1.14436 1.19247 1.93588 1.81980 1.46069 1.76234 1.93539 1.82130 1.44977 1.75457 1.21271 0.93090 0.98422 0.86781 1.19205 0.94062 0.90280 1.13440 1.21639 0.86060 0.85453 0.72802 1.90739 1.15672 1.88239 1.47131 1.86568 1.42421 1.15297 1.82400 1.23306 0.93827 0.80151 1.00170 1.18292 0.92674 0.89258 0.93823 1.21636 0.99408 0.99845 0.96860 1.21623 0.99257 1.00130 0.96637 1.21204 0.93205 0.91103 1.51556 0.93096 1.25526 0.95908 1.01457 0.94338 1.69957 1.08844 1.25476 1.49481 0.85572 0.79034 0.79756 0.77634 1.19634 1.20673 1.20461 0.89641 0.88267 0.91035 0.80163 0.80123 0.83655 0.82683 0.81834 0.83780 0.92683 0.93137 0.95335 0.91734 0.96192 0.95793 0.91792 0.94995 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.73 71.23 0.62 -2.02 16 2 C 0.02 0.49 5.91 -19.60 -0.12 0.38 16 3 C -0.14 -2.07 9.66 22.23 0.21 -1.85 16 4 C 0.01 0.21 9.47 22.33 0.21 0.42 16 5 C -0.68 -13.04 5.65 22.23 0.13 -12.92 16 6 S 2.51 42.14 5.80 -56.49 -0.33 41.82 16 7 C -0.62 -3.75 10.79 113.37 1.22 -2.53 16 8 O -0.98 -27.08 17.12 -127.65 -2.19 -29.26 16 9 O -0.96 -19.90 17.12 -127.65 -2.18 -22.09 16 10 C 0.02 0.61 9.04 22.53 0.20 0.82 16 11 C -0.17 -4.83 5.87 -20.10 -0.12 -4.94 16 12 C 0.49 18.01 7.83 70.33 0.55 18.56 16 13 O -0.53 -20.34 13.14 19.92 0.26 -20.08 16 14 O -0.35 -14.40 8.15 -56.23 -0.46 -14.86 16 15 C 0.10 4.46 4.27 71.98 0.31 4.77 16 16 C 0.06 3.00 0.58 -52.93 -0.03 2.97 16 17 C -0.12 -6.01 8.11 71.98 0.58 -5.43 16 18 C -0.12 -5.78 8.11 71.98 0.58 -5.19 16 19 C -0.53 -28.87 8.01 25.60 0.21 -28.66 16 20 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 21 C 0.03 1.49 5.15 84.65 0.44 1.93 16 22 N -0.90 -49.58 9.35 21.44 0.20 -49.38 16 23 Si 0.95 42.90 29.54 68.60 2.03 44.93 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.10 1.30 8.04 -2.39 -0.02 1.28 16 29 H 0.07 1.93 5.85 -2.39 -0.01 1.91 16 30 H 0.18 1.15 8.06 -2.91 -0.02 1.12 16 31 H 0.18 1.33 7.56 -2.91 -0.02 1.31 16 32 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.16 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.16 0.03 8.14 -2.39 -0.02 0.02 16 35 H 0.14 4.13 7.13 -2.91 -0.02 4.11 16 36 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.03 1.32 7.68 -2.39 -0.02 1.30 16 39 H 0.06 3.50 6.07 -2.39 -0.01 3.49 16 40 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 43 H 0.03 1.40 7.68 -2.38 -0.02 1.39 16 44 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -75.97 374.03 3.34 -72.63 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.01 Total: 10.01 kcal Atomic # 6 Polarization: -38.72 SS G_CDS: 5.00 Total: -33.71 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.20 Total: -49.38 kcal Atomic # 8 Polarization: -81.72 SS G_CDS: -4.57 Total: -86.29 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 42.14 SS G_CDS: -0.33 Total: 41.82 kcal Total: -75.97 3.34 -72.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764838281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.264 kcal (2) G-P(sol) polarization free energy of solvation -75.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds