Wall clock time and date at job start Sat Apr 11 2020 05:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47452 * 240.00760 * 3 2 1 5 5 H 1.48508 * 109.46811 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47065 * 120.00337 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99719 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99785 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47414 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00054 * 180.02562 * 11 10 9 13 13 O 1.21584 * 119.99849 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99526 * 180.02562 * 12 11 10 15 15 N 1.40090 * 120.00471 * 359.97438 * 14 12 11 16 16 C 1.34783 * 120.00229 * 180.02562 * 15 14 12 17 17 O 1.21590 * 119.99935 * 179.97438 * 16 15 14 18 18 N 1.34779 * 119.99768 * 0.02562 * 16 15 14 19 19 C 1.46499 * 119.99872 * 180.02562 * 18 16 15 20 20 C 1.50701 * 109.46992 * 179.97438 * 19 18 16 21 21 C 1.38241 * 119.98648 * 269.72558 * 20 19 18 22 22 C 1.38215 * 120.00743 * 179.72780 * 21 20 19 23 23 C 1.38349 * 119.98879 * 0.54512 * 22 21 20 24 24 Cl 1.73606 * 120.01120 * 179.70588 * 23 22 21 25 25 C 1.38346 * 119.97570 * 359.73013 * 23 22 21 26 26 C 1.38215 * 119.98756 * 359.97438 * 25 23 22 27 27 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47261 * 60.00395 * 9 7 2 29 29 H 1.09001 * 109.47545 * 300.00088 * 9 7 2 30 30 H 1.09002 * 109.46935 * 59.99965 * 10 9 7 31 31 H 1.08998 * 109.47061 * 300.00759 * 10 9 7 32 32 H 0.97006 * 119.99677 * 0.02562 * 11 10 9 33 33 H 0.97009 * 119.99597 * 179.97438 * 14 12 11 34 34 H 0.97002 * 120.00487 * 0.02562 * 15 14 12 35 35 H 0.97000 * 119.99708 * 359.97438 * 18 16 15 36 36 H 1.09002 * 109.47391 * 59.99686 * 19 18 16 37 37 H 1.09001 * 109.46813 * 299.99742 * 19 18 16 38 38 H 1.07995 * 119.99451 * 359.97438 * 21 20 19 39 39 H 1.07999 * 120.00426 * 180.27387 * 22 21 20 40 40 H 1.08006 * 120.01050 * 179.97438 * 25 23 22 41 41 H 1.07995 * 119.99616 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5129 -4.9308 0.0001 12 6 2.1868 -6.0980 0.0007 13 8 3.4027 -6.0979 0.0003 14 7 1.5129 -7.2651 0.0008 15 7 0.1120 -7.2652 0.0007 16 6 -0.5620 -8.4324 0.0013 17 8 -1.7779 -8.4324 0.0017 18 7 0.1120 -9.5996 0.0024 19 6 -0.6205 -10.8683 0.0025 20 6 0.3588 -12.0138 0.0032 21 6 0.8040 -12.5430 -1.1938 22 6 1.7065 -13.5898 -1.1936 23 6 2.1557 -14.1154 0.0047 24 17 3.2834 -15.4353 0.0056 25 6 1.7054 -13.5891 1.2023 26 6 0.8076 -12.5382 1.2010 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8895 31 1 2.8721 -3.6042 -0.8904 32 1 0.5428 -4.9307 0.0000 33 1 1.9979 -8.1052 0.0008 34 1 -0.3731 -6.4252 0.0002 35 1 1.0820 -9.5995 0.0025 36 1 -1.2465 -10.9266 -0.8880 37 1 -1.2479 -10.9256 0.8920 38 1 0.4496 -12.1358 -2.1291 39 1 2.0576 -14.0003 -2.1288 40 1 2.0554 -13.9992 2.1382 41 1 0.4557 -12.1276 2.1358 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784442390.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:34 Heat of formation + Delta-G solvation = -4.906040 kcal Electronic energy + Delta-G solvation = -25272.817024 eV Core-core repulsion = 21215.144656 eV Total energy + Delta-G solvation = -4057.672368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.85853 -40.01137 -39.35299 -37.09872 -36.09996 -35.31775 -35.03390 -32.87736 -31.74710 -31.68205 -30.59859 -29.38158 -26.55152 -24.87559 -23.45870 -22.28017 -21.74509 -21.50789 -20.67029 -19.55788 -18.95362 -17.66614 -16.46781 -16.45093 -16.42501 -15.91743 -15.85924 -15.62946 -15.18246 -15.06984 -14.55128 -14.49461 -14.13964 -14.05179 -13.74344 -13.71229 -13.55337 -13.20336 -12.32039 -12.10169 -12.05100 -11.91000 -11.54232 -11.36146 -11.27493 -11.04787 -10.94356 -10.69195 -10.41044 -10.27579 -9.66789 -9.65569 -9.59637 -9.34575 -9.27192 -8.82702 -8.47254 -8.29240 -6.12166 -4.15585 0.40465 0.68969 1.58175 1.74451 2.52530 2.72547 3.08485 3.25837 3.29710 3.33933 3.36563 3.62931 4.03185 4.15653 4.30087 4.39438 4.64977 4.70057 4.96426 5.08069 5.09493 5.24948 5.30892 5.35611 5.55747 5.63286 5.89479 5.90329 5.90659 6.03790 6.16218 6.27460 6.48836 6.63261 6.72751 6.90142 7.35357 7.50649 7.55476 7.85318 7.96415 8.20024 8.31001 8.58470 8.89880 9.49498 10.99252 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023315 B = 0.001635 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.672685 B =17119.031757 C =18004.375976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.137 3.863 11 N -0.731 5.731 12 C 0.709 3.291 13 O -0.577 6.577 14 N -0.547 5.547 15 N -0.534 5.534 16 C 0.717 3.283 17 O -0.574 6.574 18 N -0.741 5.741 19 C 0.179 3.821 20 C -0.107 4.107 21 C -0.085 4.085 22 C -0.113 4.113 23 C -0.026 4.026 24 Cl -0.068 7.068 25 C -0.113 4.113 26 C -0.085 4.085 27 H 0.263 0.737 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.391 0.609 33 H 0.425 0.575 34 H 0.436 0.564 35 H 0.396 0.604 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.205 -31.282 0.007 31.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.026 4.026 10 C 0.014 3.986 11 N -0.386 5.386 12 C 0.409 3.591 13 O -0.451 6.451 14 N -0.308 5.308 15 N -0.293 5.293 16 C 0.416 3.584 17 O -0.448 6.448 18 N -0.399 5.399 19 C 0.056 3.944 20 C -0.108 4.108 21 C -0.104 4.104 22 C -0.131 4.131 23 C -0.053 4.053 24 Cl -0.039 7.039 25 C -0.131 4.131 26 C -0.104 4.104 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.225 0.775 33 H 0.269 0.731 34 H 0.282 0.718 35 H 0.231 0.769 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.146 -31.209 0.007 31.209 hybrid contribution 0.565 0.727 0.000 0.920 sum 0.710 -30.482 0.007 30.490 Atomic orbital electron populations 1.69941 1.06079 1.27071 1.50037 1.24993 0.94902 0.99425 0.94903 0.86556 0.79498 0.82601 0.78774 1.20105 1.21242 1.20110 1.20974 0.93229 0.90248 1.51785 0.92204 1.19346 0.94239 0.91009 0.97990 1.21736 0.95790 0.79920 1.01121 1.45616 1.09829 1.05522 1.77638 1.15828 0.85064 0.79889 0.78352 1.91010 1.10487 1.84503 1.59098 1.44652 0.93730 1.08967 1.83474 1.44516 0.94862 1.08841 1.81107 1.15587 0.84901 0.79728 0.78221 1.91055 1.10346 1.84715 1.58638 1.45126 1.09736 1.04409 1.80633 1.20081 0.91910 0.78494 1.03949 1.19994 0.99255 0.98046 0.93510 1.21132 0.95812 0.95196 0.98235 1.21111 0.97862 0.97007 0.97137 1.21062 0.95908 0.93045 0.95319 1.98394 1.60115 1.46458 1.98959 1.21112 0.97909 0.96948 0.97148 1.21133 0.95843 0.95171 0.98231 0.92731 0.95826 0.95834 0.92270 0.92263 0.77498 0.73127 0.71796 0.76935 0.90011 0.89999 0.84573 0.84585 0.84584 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.14 9.11 -34.44 -0.31 -14.46 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.14 2.75 5.61 -4.04 -0.02 2.73 16 11 N -0.73 -11.86 5.52 -65.23 -0.36 -12.22 16 12 C 0.71 11.05 8.68 -86.92 -0.75 10.30 16 13 O -0.58 -11.07 17.18 5.29 0.09 -10.98 16 14 N -0.55 -6.06 6.26 27.63 0.17 -5.88 16 15 N -0.53 -5.65 6.26 27.64 0.17 -5.48 16 16 C 0.72 7.82 8.68 -86.91 -0.75 7.06 16 17 O -0.57 -8.26 17.18 5.29 0.09 -8.17 16 18 N -0.74 -5.58 5.51 -66.41 -0.37 -5.95 16 19 C 0.18 1.14 5.80 -5.19 -0.03 1.11 16 20 C -0.11 -0.58 5.25 -104.62 -0.55 -1.13 16 21 C -0.09 -0.44 9.70 -39.59 -0.38 -0.82 16 22 C -0.11 -0.63 9.83 -39.55 -0.39 -1.02 16 23 C -0.03 -0.17 6.32 -39.50 -0.25 -0.42 16 24 Cl -0.07 -0.45 28.96 -51.86 -1.50 -1.95 16 25 C -0.11 -0.63 9.83 -39.55 -0.39 -1.02 16 26 C -0.09 -0.44 9.70 -39.59 -0.38 -0.82 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.39 5.53 6.39 -40.82 -0.26 5.27 16 33 H 0.42 3.73 6.80 -182.60 -1.24 2.49 16 34 H 0.44 4.64 6.80 -182.60 -1.24 3.40 16 35 H 0.40 2.40 6.38 -40.82 -0.26 2.14 16 36 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 41 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -33.24 373.47 -11.58 -44.82 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.77 Total: 5.85 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -4.46 Total: 3.21 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.36 Total: -54.43 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.18 Total: -19.15 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.95 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.24 -11.58 -44.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784442390.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.913 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds