Wall clock time and date at job start Sat Apr 11 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99915 * 2 1 4 4 H 1.48501 * 109.47093 * 269.99972 * 3 2 1 5 5 H 1.48502 * 109.47430 * 29.99826 * 3 2 1 6 6 H 1.48503 * 109.47320 * 149.99999 * 3 2 1 7 7 C 1.37874 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00259 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99999 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47339 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47469 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47070 * 305.00072 * 11 10 9 13 13 N 1.46901 * 109.46860 * 65.00222 * 11 10 9 14 14 C 1.50701 * 109.47419 * 184.99997 * 11 10 9 15 15 N 1.30964 * 126.43909 * 105.00157 * 14 11 10 16 16 C 1.35221 * 105.58243 * 180.02562 * 15 14 11 17 17 C 1.48406 * 126.41895 * 180.02562 * 16 15 14 18 18 C 1.39315 * 119.66058 * 179.97438 * 17 16 15 19 19 C 1.38320 * 119.13829 * 180.02562 * 18 17 16 20 20 C 1.39232 * 118.45497 * 0.02562 * 19 18 17 21 21 O 1.35849 * 120.38124 * 180.02562 * 20 19 18 22 22 C 1.42898 * 116.99967 * 180.02562 * 21 20 19 23 23 F 1.39898 * 109.47166 * 299.99685 * 22 21 20 24 24 F 1.39902 * 109.47351 * 59.99475 * 22 21 20 25 25 C 1.38899 * 119.23541 * 359.97438 * 20 19 18 26 26 N 1.31628 * 120.80270 * 359.72397 * 25 20 19 27 27 N 1.30769 * 107.17072 * 0.02562 * 16 15 14 28 28 O 1.21294 * 110.09485 * 359.69813 * 27 16 15 29 29 H 0.96995 * 120.00291 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47531 * 59.99831 * 9 7 2 31 31 H 1.09006 * 109.47449 * 300.00332 * 9 7 2 32 32 H 1.09008 * 109.47149 * 59.99835 * 10 9 7 33 33 H 1.08997 * 109.47163 * 299.99905 * 10 9 7 34 34 H 1.00898 * 111.00245 * 59.99865 * 13 11 10 35 35 H 1.00904 * 111.00313 * 183.95682 * 13 11 10 36 36 H 1.08001 * 120.42982 * 0.02771 * 18 17 16 37 37 H 1.08001 * 120.77085 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47308 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.60072 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5516 -2.6364 0.0009 12 1 5.9149 -2.0469 -0.8408 13 7 6.0413 -2.0512 1.2562 14 6 6.0540 -4.0518 -0.1230 15 7 6.5704 -4.6031 -1.1929 16 6 6.8737 -5.8720 -0.8373 17 6 7.4859 -6.9079 -1.7059 18 6 7.7398 -8.1773 -1.1910 19 6 8.3112 -9.1344 -2.0099 20 6 8.6123 -8.7885 -3.3245 21 8 9.1738 -9.6982 -4.1629 22 6 9.4531 -9.2660 -5.4960 23 9 8.2640 -8.8674 -6.1158 24 9 10.3441 -8.1880 -5.4597 25 6 8.3311 -7.5031 -3.7692 26 7 7.7813 -6.6171 -2.9658 27 7 6.5264 -6.0154 0.4152 28 8 6.0604 -4.9792 0.8398 29 1 -0.4850 0.8400 0.0004 30 1 3.8746 -0.6799 0.8911 31 1 3.8753 -0.6803 -0.8888 32 1 3.6586 -3.1501 -0.8893 33 1 3.6580 -3.1505 0.8907 34 1 5.7177 -2.5802 2.0522 35 1 7.0478 -1.9806 1.2539 36 1 7.4935 -8.4109 -0.1657 37 1 8.5189 -10.1269 -1.6381 38 1 9.8989 -10.0866 -6.0581 39 1 8.5626 -7.2283 -4.7877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823105378.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:38 Heat of formation + Delta-G solvation = -66.456590 kcal Electronic energy + Delta-G solvation = -27955.733270 eV Core-core repulsion = 23343.595190 eV Total energy + Delta-G solvation = -4612.138081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.41937 -48.42008 -46.78146 -41.86642 -39.46531 -38.20927 -36.91115 -35.08881 -33.94654 -33.45046 -32.38816 -31.51800 -28.51515 -27.62996 -26.32310 -25.73930 -24.60471 -24.13858 -22.63938 -21.63718 -20.36105 -19.56017 -19.32507 -19.29500 -18.99411 -18.67555 -17.63313 -17.50537 -17.25099 -16.76391 -16.48470 -16.21677 -15.98158 -15.48826 -15.33207 -15.18061 -14.78571 -14.69900 -14.61716 -14.52573 -14.46755 -14.24351 -14.13725 -13.87974 -13.44365 -13.06488 -12.95462 -12.81277 -12.60110 -12.32541 -12.02439 -11.77349 -11.58592 -11.34216 -11.19246 -11.13531 -10.91886 -10.69147 -10.07825 -9.84660 -8.22309 -6.25828 -0.80203 -0.14855 0.05553 1.07853 1.31031 1.44550 1.46333 1.54577 1.60374 2.01681 2.42131 2.44574 2.44800 2.50768 3.14497 3.14626 3.30974 3.48362 3.52919 3.53662 3.58198 3.77027 3.86940 3.95330 4.14571 4.19959 4.30229 4.45629 4.66311 4.72764 4.74866 4.85979 4.93383 5.12855 5.48406 5.50704 5.67455 5.74956 5.95923 6.34508 6.46402 6.47376 6.82798 6.87153 7.38497 8.94573 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.002023 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.261890 B =13839.227575 C =14520.726133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.000 4.000 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.235 1.235 7 C -0.531 4.531 8 H 0.027 0.973 9 C 0.002 3.998 10 C -0.087 4.087 11 C 0.200 3.800 12 H 0.132 0.868 13 N -0.816 5.816 14 C 0.167 3.833 15 N -0.479 5.479 16 C 0.206 3.794 17 C 0.141 3.859 18 C -0.090 4.090 19 C -0.077 4.077 20 C 0.075 3.925 21 O -0.306 6.306 22 C 0.401 3.599 23 F -0.209 7.209 24 F -0.208 7.208 25 C 0.033 3.967 26 N -0.444 5.444 27 N -0.373 5.373 28 O 0.086 5.914 29 H 0.264 0.736 30 H 0.044 0.956 31 H 0.018 0.982 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.359 0.641 35 H 0.359 0.641 36 H 0.171 0.829 37 H 0.197 0.803 38 H 0.248 0.752 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.643 -23.125 -6.820 35.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.196 4.196 3 Si 0.775 3.225 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.158 1.158 7 C -0.569 4.569 8 H 0.046 0.954 9 C -0.035 4.035 10 C -0.126 4.126 11 C 0.084 3.916 12 H 0.150 0.850 13 N -0.347 5.347 14 C -0.056 4.056 15 N -0.211 5.211 16 C -0.065 4.065 17 C 0.004 3.996 18 C -0.111 4.111 19 C -0.103 4.103 20 C 0.028 3.972 21 O -0.222 6.222 22 C 0.313 3.687 23 F -0.191 7.191 24 F -0.190 7.190 25 C -0.128 4.128 26 N -0.155 5.155 27 N -0.080 5.080 28 O 0.025 5.975 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.189 0.811 37 H 0.214 0.786 38 H 0.263 0.737 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 26.208 -22.442 -7.273 35.261 hybrid contribution -0.011 -0.412 0.041 0.415 sum 26.197 -22.854 -7.231 35.509 Atomic orbital electron populations 1.70084 1.08477 1.28038 1.53151 1.26040 0.95589 1.03716 0.94235 0.85629 0.79969 0.77865 0.79031 1.19638 1.21529 1.15770 1.21541 0.92509 0.92858 1.49971 0.95422 1.19373 0.92903 0.93378 0.97850 1.21426 0.90154 0.99449 1.01570 1.20530 0.96003 0.78201 0.96836 0.85007 1.58817 1.17467 1.55927 1.02507 1.31115 0.94410 0.98165 0.81957 1.72145 1.16814 1.05745 1.26413 1.23722 1.01145 0.91814 0.89793 1.17999 1.01305 0.90575 0.89762 1.22106 0.96001 0.90480 1.02533 1.21284 0.97487 1.02353 0.89161 1.20209 0.95270 0.89419 0.92293 1.86671 1.75313 1.37906 1.22281 1.24577 0.75675 0.88028 0.80447 1.93111 1.50650 1.92576 1.82771 1.93107 1.68858 1.61101 1.95938 1.23423 0.99452 0.89133 1.00806 1.67279 1.08831 1.35873 1.03518 1.74787 1.15870 1.04932 1.12424 1.85233 1.58352 1.15220 1.38650 0.92701 0.93730 0.96337 0.93066 0.91779 0.82604 0.82560 0.81142 0.78626 0.73676 0.81047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.92 13.96 21.45 0.30 -60.62 16 2 C 0.00 0.01 5.47 84.65 0.46 0.47 16 3 Si 0.95 44.46 27.47 68.60 1.88 46.34 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.23 -9.98 6.54 99.48 0.65 -9.33 16 7 C -0.53 -30.59 9.66 25.60 0.25 -30.34 16 8 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 9 C 0.00 0.11 3.93 29.85 0.12 0.23 16 10 C -0.09 -3.24 4.78 30.59 0.15 -3.09 16 11 C 0.20 5.74 3.29 44.17 0.15 5.89 16 12 H 0.13 3.71 8.14 -2.39 -0.02 3.69 16 13 N -0.82 -19.36 8.68 -171.79 -1.49 -20.85 16 14 C 0.17 4.98 7.29 88.36 0.64 5.62 16 15 N -0.48 -16.10 11.56 -302.49 -3.50 -19.59 16 16 C 0.21 6.43 7.90 137.29 1.08 7.51 16 17 C 0.14 3.84 6.75 41.99 0.28 4.13 16 18 C -0.09 -1.67 9.72 22.55 0.22 -1.45 16 19 C -0.08 -1.04 10.12 22.53 0.23 -0.81 16 20 C 0.08 1.22 6.51 22.67 0.15 1.36 16 21 O -0.31 -3.17 10.44 -91.85 -0.96 -4.13 16 22 C 0.40 2.50 5.98 113.37 0.68 3.17 16 23 F -0.21 -2.53 15.59 44.97 0.70 -1.83 16 24 F -0.21 -2.37 15.60 44.97 0.70 -1.66 16 25 C 0.03 0.72 9.44 84.88 0.80 1.52 16 26 N -0.44 -12.82 10.28 -184.40 -1.90 -14.72 16 27 N -0.37 -10.91 11.83 -59.11 -0.70 -11.61 16 28 O 0.09 2.47 11.27 74.53 0.84 3.31 16 29 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 30 H 0.04 1.95 6.81 -2.39 -0.02 1.94 16 31 H 0.02 0.81 7.57 -2.38 -0.02 0.79 16 32 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.36 7.76 8.97 -89.70 -0.80 6.96 16 35 H 0.36 6.61 9.06 -89.69 -0.81 5.80 16 36 H 0.17 2.55 7.85 -2.91 -0.02 2.53 16 37 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.25 -1.49 8.14 -2.39 -0.02 -1.51 16 39 H 0.17 3.45 5.11 -2.91 -0.01 3.44 16 Total: -1.00 -79.58 350.56 0.57 -79.01 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -0.52 Total: 12.14 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 5.20 Total: -5.78 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -7.28 Total: -127.39 kcal Atomic # 8 Polarization: -0.70 SS G_CDS: -0.12 Total: -0.82 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 1.40 Total: -3.49 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -79.58 0.57 -79.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823105378.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.551 kcal (2) G-P(sol) polarization free energy of solvation -79.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds