Wall clock time and date at job start Sat Apr 11 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 119.99924 * 2 1 4 4 H 1.48496 * 109.47276 * 239.99534 * 3 2 1 5 5 H 1.48496 * 109.47250 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47248 * 119.99907 * 3 2 1 7 7 C 1.37873 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99975 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00277 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47088 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99788 * 169.99838 * 10 9 7 12 12 C 1.53246 * 109.34009 * 187.25510 * 11 10 9 13 13 N 1.47079 * 108.51716 * 306.16953 * 12 11 10 14 14 C 1.34776 * 120.88110 * 231.18594 * 13 12 11 15 15 O 1.21284 * 119.99986 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00179 * 180.02562 * 14 13 12 17 17 C 1.50700 * 109.47416 * 180.02562 * 16 14 13 18 18 C 1.38261 * 119.97621 * 89.99409 * 17 16 14 19 19 C 1.38216 * 120.05976 * 179.72452 * 18 17 16 20 20 C 1.38323 * 120.01519 * 0.25871 * 19 18 17 21 21 Cl 1.73606 * 120.02460 * 179.97438 * 20 19 18 22 22 C 1.38542 * 119.95099 * 0.02562 * 20 19 18 23 23 F 1.35095 * 120.03199 * 180.02562 * 22 20 19 24 24 C 1.38202 * 119.97681 * 270.27824 * 17 16 14 25 25 C 1.47080 * 118.24092 * 51.46290 * 13 12 11 26 26 C 1.46897 * 111.00275 * 294.30049 * 10 9 7 27 27 H 0.96999 * 120.00258 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46920 * 59.99587 * 9 7 2 29 29 H 1.08998 * 109.46632 * 299.99670 * 9 7 2 30 30 H 1.08998 * 109.49438 * 67.29546 * 11 10 9 31 31 H 1.08998 * 109.49210 * 307.21427 * 11 10 9 32 32 H 1.08997 * 109.62797 * 186.46252 * 12 11 10 33 33 H 1.08995 * 109.62764 * 65.87712 * 12 11 10 34 34 H 1.08998 * 109.47118 * 60.00469 * 16 14 13 35 35 H 1.09001 * 109.47212 * 300.00221 * 16 14 13 36 36 H 1.08002 * 119.97135 * 0.02562 * 18 17 16 37 37 H 1.08002 * 119.99371 * 180.27800 * 19 18 17 38 38 H 1.08002 * 120.00487 * 359.97438 * 24 17 16 39 39 H 1.09002 * 109.62882 * 68.24159 * 25 13 12 40 40 H 1.08992 * 109.63125 * 188.82983 * 25 13 12 41 41 H 1.09006 * 109.49062 * 292.70826 * 26 10 9 42 42 H 1.08995 * 109.49312 * 52.78973 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5212 -4.8935 0.2387 12 6 2.5638 -6.0032 0.4116 13 7 3.4615 -5.9862 -0.7533 14 6 3.7119 -7.1123 -1.4502 15 8 3.1938 -8.1579 -1.1196 16 6 4.6355 -7.0723 -2.6403 17 6 4.7449 -8.4514 -3.2379 18 6 3.8635 -8.8477 -4.2267 19 6 3.9658 -10.1101 -4.7801 20 6 4.9472 -10.9805 -4.3411 21 17 5.0755 -12.5665 -5.0355 22 6 5.8269 -10.5861 -3.3462 23 9 6.7863 -11.4347 -2.9166 24 6 5.7224 -9.3212 -2.7931 25 6 4.0838 -4.7090 -1.1338 26 6 2.9767 -3.6491 -1.2493 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 0.8796 -5.1264 -0.6111 31 1 0.9160 -4.8190 1.1422 32 1 2.0632 -6.9694 0.4740 33 1 3.1394 -5.8264 1.3201 34 1 5.6220 -6.7341 -2.3234 35 1 4.2377 -6.3841 -3.3861 36 1 3.0974 -8.1684 -4.5705 37 1 3.2796 -10.4169 -5.5556 38 1 6.4078 -9.0125 -2.0177 39 1 4.8027 -4.4102 -0.3709 40 1 4.5886 -4.8191 -2.0935 41 1 2.3148 -3.8993 -2.0785 42 1 3.4271 -2.6722 -1.4250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827483635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:48 Heat of formation + Delta-G solvation = -52.591154 kcal Electronic energy + Delta-G solvation = -26395.906465 eV Core-core repulsion = 22316.246354 eV Total energy + Delta-G solvation = -4079.660112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.24100 -40.44261 -39.25643 -37.57394 -36.86847 -34.49289 -33.14082 -32.43500 -31.10574 -30.84624 -28.71011 -27.62144 -25.44758 -23.48303 -23.33968 -22.65199 -21.82332 -20.58754 -18.79131 -17.78286 -17.23808 -17.08110 -16.74674 -16.44660 -16.04308 -15.74544 -15.38167 -14.85936 -14.55922 -14.48748 -14.18598 -13.91262 -13.76218 -13.72288 -13.57798 -13.18721 -13.09844 -12.57472 -12.37865 -12.04188 -11.99274 -11.76674 -11.68892 -11.35786 -11.26641 -11.13760 -11.03762 -10.83138 -10.68048 -10.61187 -9.96734 -9.83469 -9.35834 -9.31680 -8.92388 -8.58996 -8.50305 -7.40984 -6.11660 -4.14258 0.57223 0.75121 1.66338 2.57817 2.85968 3.22450 3.26500 3.31901 3.33641 3.70960 4.15294 4.28607 4.33352 4.50453 4.67269 4.70512 4.78638 4.97185 5.08945 5.16272 5.23552 5.29374 5.31333 5.43971 5.46125 5.56194 5.57923 5.65580 5.69271 5.79368 5.95181 6.01994 6.20839 6.32321 6.35882 6.37945 6.58035 7.14862 7.20542 7.43330 7.67343 7.94572 8.04951 8.13759 8.40239 8.92461 9.50494 10.99003 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.001949 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.560843 B =14360.345771 C =14452.388395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.041 3.959 12 C 0.118 3.882 13 N -0.607 5.607 14 C 0.515 3.485 15 O -0.542 6.542 16 C -0.107 4.107 17 C -0.027 4.027 18 C -0.102 4.102 19 C -0.080 4.080 20 C -0.076 4.076 21 Cl -0.055 7.055 22 C 0.111 3.889 23 F -0.128 7.128 24 C -0.128 4.128 25 C 0.107 3.893 26 C 0.049 3.951 27 H 0.263 0.737 28 H -0.009 1.009 29 H 0.032 0.968 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.025 0.975 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.933 -18.373 -9.525 23.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.088 4.088 12 C -0.004 4.004 13 N -0.340 5.340 14 C 0.302 3.698 15 O -0.420 6.420 16 C -0.146 4.146 17 C -0.027 4.027 18 C -0.120 4.120 19 C -0.099 4.099 20 C -0.104 4.104 21 Cl -0.026 7.026 22 C 0.090 3.910 23 F -0.106 7.106 24 C -0.147 4.147 25 C -0.016 4.016 26 C -0.080 4.080 27 H 0.072 0.928 28 H 0.009 0.991 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.044 0.956 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.862 -18.895 -8.997 23.579 hybrid contribution -0.073 0.668 -0.584 0.891 sum 10.789 -18.227 -9.582 23.247 Atomic orbital electron populations 1.69941 1.06102 1.27040 1.50517 1.24999 0.94876 0.99386 0.95317 0.86545 0.79427 0.82687 0.78648 1.20260 1.21364 1.20121 1.21082 0.93396 0.89845 1.50680 0.91850 1.19724 0.89981 0.87126 0.96261 1.62077 1.28146 1.02739 1.33134 1.22408 0.94942 0.90506 1.00985 1.21767 0.91703 0.99529 0.87403 1.48242 1.46807 1.08552 1.30415 1.20313 0.82129 0.83474 0.83840 1.90715 1.52006 1.30045 1.69246 1.20774 1.01739 0.94898 0.97214 1.19259 0.93889 0.94860 0.94737 1.21065 0.98681 0.95936 0.96358 1.20933 0.96429 0.92642 0.99890 1.20986 1.00327 0.89526 0.99550 1.98384 1.97679 1.23230 1.83302 1.17304 0.88781 0.88925 0.95949 1.91538 1.60915 1.69644 1.88544 1.20954 1.00895 0.91653 1.01161 1.22165 0.96296 0.82632 1.00536 1.22419 0.95054 0.99041 0.91465 0.92762 0.99102 0.95001 0.95533 0.90027 0.89391 0.90875 0.87284 0.87071 0.84307 0.83849 0.83858 0.90352 0.90113 0.95630 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.66 13.29 55.43 0.74 -24.92 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 20.59 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.51 -13.43 8.41 -34.44 -0.29 -13.72 16 8 H 0.06 1.62 7.13 -52.49 -0.37 1.24 16 9 C 0.19 4.74 4.72 -4.98 -0.02 4.71 16 10 N -0.54 -10.47 4.62 -235.46 -1.09 -11.55 16 11 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 12 C 0.12 1.71 6.60 -3.60 -0.02 1.69 16 13 N -0.61 -8.06 3.00 -172.18 -0.52 -8.57 16 14 C 0.51 6.59 7.70 -10.99 -0.08 6.51 16 15 O -0.54 -8.84 15.49 5.55 0.09 -8.75 16 16 C -0.11 -0.92 4.19 -29.04 -0.12 -1.04 16 17 C -0.03 -0.25 4.37 -104.63 -0.46 -0.71 16 18 C -0.10 -0.90 9.70 -39.58 -0.38 -1.29 16 19 C -0.08 -0.70 9.83 -39.56 -0.39 -1.09 16 20 C -0.08 -0.77 6.33 -39.44 -0.25 -1.02 16 21 Cl -0.05 -0.53 28.62 -51.86 -1.48 -2.01 16 22 C 0.11 1.19 7.28 -39.39 -0.29 0.90 16 23 F -0.13 -1.46 16.84 2.25 0.04 -1.42 16 24 C -0.13 -1.26 9.68 -39.52 -0.38 -1.64 16 25 C 0.11 1.29 6.53 -3.36 -0.02 1.27 16 26 C 0.05 0.82 5.47 -3.46 -0.02 0.80 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 29 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 1.35 7.99 -51.93 -0.41 0.94 16 32 H 0.09 1.28 7.06 -51.93 -0.37 0.92 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.11 0.70 7.93 -51.93 -0.41 0.28 16 35 H 0.11 0.75 7.61 -51.93 -0.40 0.36 16 36 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.08 0.70 6.02 -51.93 -0.31 0.38 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 1.73 6.67 -51.93 -0.35 1.38 16 LS Contribution 366.15 15.07 5.52 5.52 Total: -1.00 -31.26 366.15 -10.13 -41.40 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.55 Total: -2.70 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.85 Total: -2.54 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.87 Total: -45.05 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.48 Total: -2.01 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.26 -10.13 -41.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.194 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds