Wall clock time and date at job start Sat Apr 11 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 119.99924 * 2 1 4 4 H 1.48496 * 109.47276 * 239.99534 * 3 2 1 5 5 H 1.48496 * 109.47250 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47248 * 119.99907 * 3 2 1 7 7 C 1.37873 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99975 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00277 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47088 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99788 * 169.99838 * 10 9 7 12 12 C 1.53246 * 109.34009 * 187.25510 * 11 10 9 13 13 N 1.47079 * 108.51716 * 306.16953 * 12 11 10 14 14 C 1.34776 * 120.88110 * 231.18594 * 13 12 11 15 15 O 1.21284 * 119.99986 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00179 * 180.02562 * 14 13 12 17 17 C 1.50700 * 109.47416 * 180.02562 * 16 14 13 18 18 C 1.38261 * 119.97621 * 89.99409 * 17 16 14 19 19 C 1.38216 * 120.05976 * 179.72452 * 18 17 16 20 20 C 1.38323 * 120.01519 * 0.25871 * 19 18 17 21 21 Cl 1.73606 * 120.02460 * 179.97438 * 20 19 18 22 22 C 1.38542 * 119.95099 * 0.02562 * 20 19 18 23 23 F 1.35095 * 120.03199 * 180.02562 * 22 20 19 24 24 C 1.38202 * 119.97681 * 270.27824 * 17 16 14 25 25 C 1.47080 * 118.24092 * 51.46290 * 13 12 11 26 26 C 1.46897 * 111.00275 * 294.30049 * 10 9 7 27 27 H 0.96999 * 120.00258 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46920 * 59.99587 * 9 7 2 29 29 H 1.08998 * 109.46632 * 299.99670 * 9 7 2 30 30 H 1.08998 * 109.49438 * 67.29546 * 11 10 9 31 31 H 1.08998 * 109.49210 * 307.21427 * 11 10 9 32 32 H 1.08997 * 109.62797 * 186.46252 * 12 11 10 33 33 H 1.08995 * 109.62764 * 65.87712 * 12 11 10 34 34 H 1.08998 * 109.47118 * 60.00469 * 16 14 13 35 35 H 1.09001 * 109.47212 * 300.00221 * 16 14 13 36 36 H 1.08002 * 119.97135 * 0.02562 * 18 17 16 37 37 H 1.08002 * 119.99371 * 180.27800 * 19 18 17 38 38 H 1.08002 * 120.00487 * 359.97438 * 24 17 16 39 39 H 1.09002 * 109.62882 * 68.24159 * 25 13 12 40 40 H 1.08992 * 109.63125 * 188.82983 * 25 13 12 41 41 H 1.09006 * 109.49062 * 292.70826 * 26 10 9 42 42 H 1.08995 * 109.49312 * 52.78973 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5212 -4.8935 0.2387 12 6 2.5638 -6.0032 0.4116 13 7 3.4615 -5.9862 -0.7533 14 6 3.7119 -7.1123 -1.4502 15 8 3.1938 -8.1579 -1.1196 16 6 4.6355 -7.0723 -2.6403 17 6 4.7449 -8.4514 -3.2379 18 6 3.8635 -8.8477 -4.2267 19 6 3.9658 -10.1101 -4.7801 20 6 4.9472 -10.9805 -4.3411 21 17 5.0755 -12.5665 -5.0355 22 6 5.8269 -10.5861 -3.3462 23 9 6.7863 -11.4347 -2.9166 24 6 5.7224 -9.3212 -2.7931 25 6 4.0838 -4.7090 -1.1338 26 6 2.9767 -3.6491 -1.2493 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 0.8796 -5.1264 -0.6111 31 1 0.9160 -4.8190 1.1422 32 1 2.0632 -6.9694 0.4740 33 1 3.1394 -5.8264 1.3201 34 1 5.6220 -6.7341 -2.3234 35 1 4.2377 -6.3841 -3.3861 36 1 3.0974 -8.1684 -4.5705 37 1 3.2796 -10.4169 -5.5556 38 1 6.4078 -9.0125 -2.0177 39 1 4.8027 -4.4102 -0.3709 40 1 4.5886 -4.8191 -2.0935 41 1 2.3148 -3.8993 -2.0785 42 1 3.4271 -2.6722 -1.4250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827483635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:48 Heat of formation + Delta-G solvation = -71.032488 kcal Electronic energy + Delta-G solvation = -26396.706141 eV Core-core repulsion = 22316.246354 eV Total energy + Delta-G solvation = -4080.459788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.04272 -41.40199 -40.11181 -38.83840 -37.62441 -35.93455 -34.44093 -33.79248 -32.11258 -31.72420 -30.10547 -28.74696 -26.97813 -24.65689 -24.12363 -23.95727 -23.04754 -21.82627 -19.87882 -18.55359 -18.45851 -18.24939 -17.82143 -17.46239 -16.90952 -16.74171 -16.65310 -16.36880 -15.97421 -15.56452 -15.27778 -15.13300 -14.85711 -14.68170 -14.50182 -14.27384 -14.03292 -13.93355 -13.55120 -13.26526 -13.03813 -12.76244 -12.74550 -12.56571 -12.48727 -12.43473 -12.33731 -12.22468 -12.08742 -11.97682 -11.73441 -11.27821 -10.88298 -10.58941 -10.01603 -9.73298 -9.66033 -9.02483 -8.18030 -6.28452 -0.14920 0.06163 0.93662 1.45692 1.48452 1.56050 1.61982 1.94261 2.42102 2.44365 2.99328 3.14748 3.26550 3.46853 3.60773 3.65070 4.01633 4.04874 4.09313 4.12752 4.27217 4.33055 4.35160 4.48298 4.50664 4.57056 4.68392 4.77214 4.79709 4.88907 4.91601 4.98584 5.01108 5.06790 5.23566 5.26058 5.34393 5.47790 5.65070 5.66053 6.04742 6.26685 6.47399 6.58953 6.87772 7.14781 7.41715 8.92942 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.001949 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.560843 B =14360.345771 C =14452.388395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.520 4.520 8 H 0.072 0.928 9 C 0.208 3.792 10 N -0.540 5.540 11 C 0.044 3.956 12 C 0.128 3.872 13 N -0.611 5.611 14 C 0.515 3.485 15 O -0.581 6.581 16 C -0.100 4.100 17 C -0.035 4.035 18 C -0.104 4.104 19 C -0.082 4.082 20 C -0.087 4.087 21 Cl -0.057 7.057 22 C 0.089 3.911 23 F -0.138 7.138 24 C -0.132 4.132 25 C 0.118 3.882 26 C 0.046 3.954 27 H 0.263 0.737 28 H -0.040 1.040 29 H 0.001 0.999 30 H 0.015 0.985 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.019 0.981 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.073 -17.888 -10.554 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.558 4.558 8 H 0.090 0.910 9 C 0.082 3.918 10 N -0.265 5.265 11 C -0.085 4.085 12 C 0.005 3.995 13 N -0.344 5.344 14 C 0.305 3.695 15 O -0.461 6.461 16 C -0.139 4.139 17 C -0.036 4.036 18 C -0.122 4.122 19 C -0.100 4.100 20 C -0.115 4.115 21 Cl -0.028 7.028 22 C 0.069 3.931 23 F -0.117 7.117 24 C -0.151 4.151 25 C -0.004 4.004 26 C -0.083 4.083 27 H 0.072 0.928 28 H -0.023 1.023 29 H 0.019 0.981 30 H 0.034 0.966 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.181 0.819 38 H 0.174 0.826 39 H 0.105 0.895 40 H 0.146 0.854 41 H 0.037 0.963 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.037 -18.427 -10.040 24.704 hybrid contribution -0.802 0.450 -0.271 0.959 sum 12.235 -17.977 -10.311 24.066 Atomic orbital electron populations 1.70088 1.07911 1.27928 1.51813 1.25948 0.95681 1.03360 0.94897 0.85415 0.78054 0.77736 0.79286 1.18699 1.21564 1.19354 1.21428 0.93871 0.90583 1.49905 0.91026 1.19365 0.90128 0.89029 0.93295 1.62001 1.26966 1.02358 1.35175 1.22415 0.95667 0.90182 1.00254 1.21547 0.91398 0.98000 0.88573 1.48319 1.46631 1.09357 1.30062 1.21021 0.81860 0.82406 0.84230 1.90708 1.53616 1.31400 1.70373 1.20860 1.02280 0.95034 0.95708 1.19435 0.93851 0.95341 0.94953 1.21384 0.98701 0.96155 0.95964 1.21205 0.96197 0.92476 1.00125 1.21187 1.00793 0.89768 0.99741 1.98379 1.97717 1.23465 1.83288 1.17561 0.89226 0.89486 0.96844 1.91506 1.61363 1.70025 1.88762 1.21162 1.01318 0.91322 1.01256 1.22200 0.94400 0.80425 1.03380 1.22512 0.95755 1.00364 0.89664 0.92816 1.02282 0.98072 0.96635 0.90600 0.89540 0.90222 0.84187 0.84394 0.82460 0.81920 0.82649 0.89515 0.85449 0.96323 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.79 13.29 21.44 0.28 -54.51 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 41.88 29.54 68.60 2.03 43.91 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.52 -27.47 8.41 25.60 0.22 -27.25 16 8 H 0.07 3.59 7.13 -2.91 -0.02 3.57 16 9 C 0.21 10.52 4.72 85.56 0.40 10.92 16 10 N -0.54 -21.15 4.62 -898.88 -4.15 -25.30 16 11 C 0.04 1.50 5.62 86.39 0.49 1.98 16 12 C 0.13 3.56 6.60 86.35 0.57 4.13 16 13 N -0.61 -14.60 3.00 -817.05 -2.45 -17.05 16 14 C 0.51 11.67 7.70 87.66 0.68 12.35 16 15 O -0.58 -17.92 15.49 -3.04 -0.05 -17.97 16 16 C -0.10 -1.29 4.19 29.10 0.12 -1.16 16 17 C -0.04 -0.56 4.37 -19.87 -0.09 -0.65 16 18 C -0.10 -1.56 9.70 22.27 0.22 -1.34 16 19 C -0.08 -1.27 9.83 22.28 0.22 -1.05 16 20 C -0.09 -1.68 6.33 22.36 0.14 -1.53 16 21 Cl -0.06 -1.07 28.62 -2.72 -0.08 -1.15 16 22 C 0.09 1.83 7.28 22.39 0.16 1.99 16 23 F -0.14 -3.11 16.84 44.97 0.76 -2.35 16 24 C -0.13 -2.33 9.68 22.31 0.22 -2.12 16 25 C 0.12 2.44 6.53 86.50 0.57 3.01 16 26 C 0.05 1.45 5.47 86.54 0.47 1.92 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H -0.04 -2.26 8.12 -2.39 -0.02 -2.28 16 29 H 0.00 0.06 7.97 -2.39 -0.02 0.05 16 30 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 2.62 7.99 -2.39 -0.02 2.60 16 32 H 0.09 2.47 7.06 -2.39 -0.02 2.45 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.14 1.00 7.93 -2.39 -0.02 0.98 16 35 H 0.14 1.11 7.61 -2.39 -0.02 1.09 16 36 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 37 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.13 1.49 6.02 -2.39 -0.01 1.47 16 41 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.09 2.94 6.67 -2.39 -0.02 2.92 16 Total: -1.00 -70.01 366.15 2.22 -67.79 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.04 Total: 5.04 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 4.84 Total: 1.60 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -6.32 Total: -96.86 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.05 Total: -17.97 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.76 Total: -2.35 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -70.01 2.22 -67.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.243 kcal (2) G-P(sol) polarization free energy of solvation -70.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds