Wall clock time and date at job start Sat Apr 11 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86803 * 119.99702 * 2 1 4 4 H 1.48501 * 109.47143 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47011 * 120.00012 * 3 2 1 6 6 H 1.48500 * 109.46918 * 240.00005 * 3 2 1 7 7 C 1.40043 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99918 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00458 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99597 * 354.96904 * 9 7 2 11 11 N 1.34771 * 120.00066 * 174.96356 * 9 7 2 12 12 C 1.46962 * 120.59695 * 5.10337 * 11 9 7 13 13 C 1.53808 * 108.40435 * 124.75072 * 12 11 9 14 14 N 1.46972 * 108.57535 * 49.64158 * 13 12 11 15 15 C 1.34767 * 120.59719 * 124.62761 * 14 13 12 16 16 O 1.21596 * 120.00396 * 185.35777 * 15 14 13 17 17 N 1.34775 * 120.00241 * 5.35637 * 15 14 13 18 18 C 1.40221 * 120.00693 * 175.48508 * 17 15 14 19 19 C 1.39145 * 120.45817 * 34.48863 * 18 17 15 20 20 C 1.38546 * 118.41888 * 179.78084 * 19 18 17 21 21 C 1.38457 * 119.26281 * 0.49689 * 20 19 18 22 22 F 1.35101 * 119.56367 * 179.77208 * 21 20 19 23 23 N 1.32085 * 120.87635 * 359.74143 * 21 20 19 24 24 C 1.32031 * 121.72042 * 0.02562 * 23 21 20 25 25 F 1.35104 * 119.67677 * 179.97438 * 24 23 21 26 26 C 1.46969 * 118.80934 * 304.64198 * 14 13 12 27 27 C 1.46971 * 120.59521 * 185.37455 * 11 9 7 28 28 H 0.96999 * 120.00130 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.60959 * 244.54054 * 12 11 9 30 30 H 1.09004 * 109.60802 * 5.04045 * 12 11 9 31 31 H 1.08991 * 109.74547 * 289.84986 * 13 12 11 32 32 H 1.09001 * 109.67646 * 169.38347 * 13 12 11 33 33 H 0.96999 * 119.99880 * 355.48904 * 17 15 14 34 34 H 1.08004 * 120.79172 * 0.02562 * 19 18 17 35 35 H 1.08010 * 120.36643 * 180.26132 * 20 19 18 36 36 H 1.09002 * 109.61022 * 295.49032 * 26 14 13 37 37 H 1.09003 * 109.61005 * 174.97395 * 26 14 13 38 38 H 1.09002 * 109.60250 * 354.95403 * 27 11 9 39 39 H 1.08999 * 109.60744 * 115.28656 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2756 2.7465 -0.0006 5 1 3.0944 1.6965 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0017 10 8 0.0618 -2.4825 0.0946 11 7 1.9452 -3.6454 -0.1003 12 6 3.4147 -3.6656 -0.1009 13 6 3.8879 -4.6060 1.0205 14 7 3.1621 -5.8784 0.9019 15 6 3.8320 -7.0433 0.7992 16 8 3.2250 -8.0786 0.6039 17 7 5.1749 -7.0607 0.9128 18 6 5.8639 -8.2819 0.9008 19 6 5.4112 -9.3395 0.1180 20 6 6.1270 -10.5256 0.1345 21 6 7.2553 -10.6242 0.9310 22 9 7.9552 -11.7795 0.9552 23 7 7.6567 -9.6035 1.6669 24 6 7.0053 -8.4551 1.6755 25 9 7.4524 -7.4382 2.4445 26 6 1.6925 -5.8578 0.8970 27 6 1.2194 -4.9179 -0.2188 28 1 -0.4850 0.8400 0.0004 29 1 3.7751 -4.0291 -1.0632 30 1 3.7944 -2.6597 0.0784 31 1 3.6802 -4.1554 1.9909 32 1 4.9586 -4.7850 0.9219 33 1 5.6648 -6.2284 1.0030 34 1 4.5252 -9.2368 -0.4911 35 1 5.8062 -11.3653 -0.4644 36 1 1.3286 -5.4962 1.8588 37 1 1.3132 -6.8631 0.7139 38 1 0.1489 -4.7392 -0.1172 39 1 1.4246 -5.3670 -1.1905 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879653799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:04 Heat of formation + Delta-G solvation = -75.026849 kcal Electronic energy + Delta-G solvation = -29065.183686 eV Core-core repulsion = 24452.673971 eV Total energy + Delta-G solvation = -4612.509715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.50773 -49.41580 -41.24859 -39.93641 -38.26373 -36.14826 -35.47429 -33.37752 -32.68613 -32.54933 -31.22803 -29.75231 -27.49721 -26.12598 -24.61041 -24.10568 -23.35946 -22.29767 -20.51638 -19.78626 -18.95699 -18.67022 -17.98701 -17.71198 -16.97876 -16.46273 -16.27041 -16.06843 -15.84292 -15.56720 -15.40071 -15.05319 -14.64367 -14.34472 -14.26738 -14.18840 -13.81086 -13.76511 -13.53292 -13.38210 -12.98499 -12.72394 -12.16066 -11.77946 -11.53877 -11.35817 -11.28699 -11.21350 -11.04799 -10.86919 -10.68385 -10.36591 -10.34098 -10.21419 -9.97553 -9.06517 -8.93791 -8.57831 -7.76137 -7.39585 -6.33535 -4.80361 0.22969 0.52470 2.10189 2.61841 2.70090 3.05483 3.06259 3.11903 3.13286 3.40080 3.52015 3.95591 4.07120 4.28540 4.32338 4.41637 4.64030 4.95593 5.05816 5.10951 5.24481 5.35916 5.44719 5.46163 5.50784 5.64938 5.77015 5.79836 5.88233 6.13731 6.18666 6.21163 6.35474 6.41381 6.63999 6.80363 7.30374 7.36947 7.51890 7.93406 8.14619 8.18306 8.87651 9.23141 10.41443 10.60079 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024259 B = 0.002393 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.950290 B =11698.103239 C =12563.430734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.574 6.574 11 N -0.643 5.643 12 C 0.110 3.890 13 C 0.090 3.910 14 N -0.610 5.610 15 C 0.710 3.290 16 O -0.579 6.579 17 N -0.680 5.680 18 C 0.101 3.899 19 C -0.026 4.026 20 C -0.177 4.177 21 C 0.321 3.679 22 F -0.105 7.105 23 N -0.527 5.527 24 C 0.316 3.684 25 F -0.101 7.101 26 C 0.115 3.885 27 C 0.106 3.894 28 H 0.271 0.729 29 H 0.049 0.951 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.414 0.586 34 H 0.177 0.823 35 H 0.162 0.838 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.448 -15.131 0.226 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.456 6.456 11 N -0.382 5.382 12 C -0.015 4.015 13 C -0.034 4.034 14 N -0.346 5.346 15 C 0.412 3.588 16 O -0.457 6.457 17 N -0.331 5.331 18 C 0.000 4.000 19 C -0.054 4.054 20 C -0.198 4.198 21 C 0.166 3.834 22 F -0.084 7.084 23 N -0.247 5.247 24 C 0.159 3.841 25 F -0.080 7.080 26 C -0.008 4.008 27 C -0.019 4.019 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.254 0.746 34 H 0.194 0.806 35 H 0.179 0.821 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.801 -15.737 0.689 20.298 hybrid contribution 0.593 1.309 -0.121 1.442 sum 13.394 -14.429 0.568 19.695 Atomic orbital electron populations 1.69987 1.07103 1.27669 1.34588 1.25727 0.94641 1.00367 0.92525 0.86435 0.79873 0.81019 0.79489 1.20491 1.19178 1.19222 1.20895 0.93446 0.89169 1.54673 0.90938 1.18290 0.86964 0.82074 0.76168 1.90608 1.14327 1.85817 1.54836 1.48202 1.04227 1.05980 1.79778 1.21868 0.83625 1.00398 0.95629 1.22397 0.94748 0.84343 1.01888 1.47320 1.07771 1.04460 1.75018 1.15722 0.80490 0.84533 0.78046 1.90886 1.67012 1.31301 1.56467 1.42693 1.06290 1.07141 1.77023 1.18149 0.93946 0.89420 0.98462 1.21719 0.99235 0.89934 0.94480 1.21863 0.95028 1.00774 1.02176 1.17471 0.89728 0.81567 0.94608 1.91664 1.78388 1.43564 1.94776 1.66002 1.34553 0.99800 1.24365 1.17177 0.91943 0.83830 0.91147 1.91670 1.89093 1.54667 1.72568 1.22110 0.76515 1.01679 1.00473 1.21545 0.99395 0.85037 0.95892 0.91843 0.93288 0.87367 0.90075 0.90816 0.74608 0.80617 0.82087 0.90941 0.88533 0.88320 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.74 11.84 55.55 0.66 -21.08 16 2 C 0.09 2.29 5.50 -17.37 -0.10 2.19 16 3 Si 0.91 18.75 29.56 -169.99 -5.02 13.73 16 4 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.55 -14.01 8.86 -35.63 -0.32 -14.33 16 8 H 0.07 1.64 5.67 -52.49 -0.30 1.35 16 9 C 0.56 14.62 7.62 -12.99 -0.10 14.52 16 10 O -0.57 -17.42 14.45 5.20 0.08 -17.34 16 11 N -0.64 -13.02 2.94 -173.87 -0.51 -13.53 16 12 C 0.11 1.70 6.51 -3.37 -0.02 1.68 16 13 C 0.09 1.09 6.58 -3.36 -0.02 1.07 16 14 N -0.61 -8.14 2.95 -177.94 -0.52 -8.67 16 15 C 0.71 9.24 8.16 -86.93 -0.71 8.53 16 16 O -0.58 -8.75 13.21 5.28 0.07 -8.68 16 17 N -0.68 -7.01 5.15 -14.05 -0.07 -7.08 16 18 C 0.10 1.04 6.34 -83.39 -0.53 0.51 16 19 C -0.03 -0.24 8.81 -39.13 -0.34 -0.59 16 20 C -0.18 -1.39 10.07 -39.39 -0.40 -1.79 16 21 C 0.32 3.18 8.40 -17.36 -0.15 3.03 16 22 F -0.10 -1.03 17.29 2.25 0.04 -0.99 16 23 N -0.53 -6.17 10.38 -13.81 -0.14 -6.31 16 24 C 0.32 3.45 8.43 -17.17 -0.14 3.31 16 25 F -0.10 -1.09 16.99 2.25 0.04 -1.05 16 26 C 0.12 1.71 6.60 -3.59 -0.02 1.69 16 27 C 0.11 1.88 6.60 -3.59 -0.02 1.86 16 28 H 0.27 7.01 8.29 -40.82 -0.34 6.68 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.11 1.72 5.34 -51.93 -0.28 1.44 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.62 5.62 -51.93 -0.29 0.33 16 33 H 0.41 3.42 6.15 -40.82 -0.25 3.16 16 34 H 0.18 1.73 6.28 -52.48 -0.33 1.40 16 35 H 0.16 0.80 8.06 -52.48 -0.42 0.37 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.10 1.37 6.99 -51.93 -0.36 1.01 16 38 H 0.10 1.96 6.99 -51.93 -0.36 1.60 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -33.60 336.50 -6.62 -40.21 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -3.42 Total: 4.04 kcal Atomic # 6 Polarization: 24.55 SS G_CDS: -2.87 Total: 21.68 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.59 Total: -56.67 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: 0.14 Total: -26.02 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.08 Total: -2.04 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.60 -6.62 -40.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879653799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.812 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds