Wall clock time and date at job start Sat Apr 11 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86803 * 119.99702 * 2 1 4 4 H 1.48501 * 109.47143 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47011 * 120.00012 * 3 2 1 6 6 H 1.48500 * 109.46918 * 240.00005 * 3 2 1 7 7 C 1.40043 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99918 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00458 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99597 * 354.96904 * 9 7 2 11 11 N 1.34771 * 120.00066 * 174.96356 * 9 7 2 12 12 C 1.46962 * 120.59695 * 5.10337 * 11 9 7 13 13 C 1.53808 * 108.40435 * 124.75072 * 12 11 9 14 14 N 1.46972 * 108.57535 * 49.64158 * 13 12 11 15 15 C 1.34767 * 120.59719 * 124.62761 * 14 13 12 16 16 O 1.21596 * 120.00396 * 185.35777 * 15 14 13 17 17 N 1.34775 * 120.00241 * 5.35637 * 15 14 13 18 18 C 1.40221 * 120.00693 * 175.48508 * 17 15 14 19 19 C 1.39145 * 120.45817 * 34.48863 * 18 17 15 20 20 C 1.38546 * 118.41888 * 179.78084 * 19 18 17 21 21 C 1.38457 * 119.26281 * 0.49689 * 20 19 18 22 22 F 1.35101 * 119.56367 * 179.77208 * 21 20 19 23 23 N 1.32085 * 120.87635 * 359.74143 * 21 20 19 24 24 C 1.32031 * 121.72042 * 0.02562 * 23 21 20 25 25 F 1.35104 * 119.67677 * 179.97438 * 24 23 21 26 26 C 1.46969 * 118.80934 * 304.64198 * 14 13 12 27 27 C 1.46971 * 120.59521 * 185.37455 * 11 9 7 28 28 H 0.96999 * 120.00130 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.60959 * 244.54054 * 12 11 9 30 30 H 1.09004 * 109.60802 * 5.04045 * 12 11 9 31 31 H 1.08991 * 109.74547 * 289.84986 * 13 12 11 32 32 H 1.09001 * 109.67646 * 169.38347 * 13 12 11 33 33 H 0.96999 * 119.99880 * 355.48904 * 17 15 14 34 34 H 1.08004 * 120.79172 * 0.02562 * 19 18 17 35 35 H 1.08010 * 120.36643 * 180.26132 * 20 19 18 36 36 H 1.09002 * 109.61022 * 295.49032 * 26 14 13 37 37 H 1.09003 * 109.61005 * 174.97395 * 26 14 13 38 38 H 1.09002 * 109.60250 * 354.95403 * 27 11 9 39 39 H 1.08999 * 109.60744 * 115.28656 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2756 2.7465 -0.0006 5 1 3.0944 1.6965 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0017 10 8 0.0618 -2.4825 0.0946 11 7 1.9452 -3.6454 -0.1003 12 6 3.4147 -3.6656 -0.1009 13 6 3.8879 -4.6060 1.0205 14 7 3.1621 -5.8784 0.9019 15 6 3.8320 -7.0433 0.7992 16 8 3.2250 -8.0786 0.6039 17 7 5.1749 -7.0607 0.9128 18 6 5.8639 -8.2819 0.9008 19 6 5.4112 -9.3395 0.1180 20 6 6.1270 -10.5256 0.1345 21 6 7.2553 -10.6242 0.9310 22 9 7.9552 -11.7795 0.9552 23 7 7.6567 -9.6035 1.6669 24 6 7.0053 -8.4551 1.6755 25 9 7.4524 -7.4382 2.4445 26 6 1.6925 -5.8578 0.8970 27 6 1.2194 -4.9179 -0.2188 28 1 -0.4850 0.8400 0.0004 29 1 3.7751 -4.0291 -1.0632 30 1 3.7944 -2.6597 0.0784 31 1 3.6802 -4.1554 1.9909 32 1 4.9586 -4.7850 0.9219 33 1 5.6648 -6.2284 1.0030 34 1 4.5252 -9.2368 -0.4911 35 1 5.8062 -11.3653 -0.4644 36 1 1.3286 -5.4962 1.8588 37 1 1.3132 -6.8631 0.7139 38 1 0.1489 -4.7392 -0.1172 39 1 1.4246 -5.3670 -1.1905 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879653799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:03 Heat of formation + Delta-G solvation = -98.907712 kcal Electronic energy + Delta-G solvation = -29066.219237 eV Core-core repulsion = 24452.673971 eV Total energy + Delta-G solvation = -4613.545267 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.30203 -50.16716 -42.19147 -40.88639 -39.77334 -37.68481 -36.42967 -34.88991 -34.50600 -33.47568 -32.46618 -30.65033 -29.07295 -27.72865 -25.46247 -25.04851 -24.53718 -23.59426 -21.83477 -20.88952 -20.01969 -19.66116 -18.92111 -18.74738 -18.01802 -17.80894 -17.56912 -17.11253 -16.83065 -16.63417 -16.57253 -16.11058 -15.92064 -15.84279 -15.69494 -15.37316 -14.81183 -14.59220 -14.44437 -14.30465 -14.27114 -13.82956 -13.59983 -13.45989 -13.13787 -12.85270 -12.68557 -12.44154 -12.29040 -12.21049 -12.02057 -11.97454 -11.60748 -11.20361 -10.89923 -10.81129 -10.18872 -9.78302 -9.47544 -8.98405 -8.27357 -6.81993 -0.52350 -0.23128 1.13803 1.43878 1.45981 1.57573 1.74994 1.84537 2.23938 2.25023 2.45568 2.48236 2.74326 2.82588 3.33042 3.58473 3.62330 3.83040 3.92325 3.96956 4.09751 4.26441 4.36316 4.45215 4.50140 4.62825 4.66356 4.75749 4.78396 4.89353 4.96513 5.06226 5.22424 5.41458 5.43488 5.60459 5.73996 6.03924 6.13333 6.35170 6.55803 6.90323 7.16494 7.40848 8.47466 8.68549 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024259 B = 0.002393 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.950290 B =11698.103239 C =12563.430734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.029 3.971 3 Si 0.993 3.007 4 H -0.282 1.282 5 H -0.251 1.251 6 H -0.253 1.253 7 C -0.565 4.565 8 H 0.101 0.899 9 C 0.542 3.458 10 O -0.631 6.631 11 N -0.645 5.645 12 C 0.105 3.895 13 C 0.098 3.902 14 N -0.613 5.613 15 C 0.714 3.286 16 O -0.599 6.599 17 N -0.668 5.668 18 C 0.096 3.904 19 C -0.027 4.027 20 C -0.153 4.153 21 C 0.313 3.687 22 F -0.106 7.106 23 N -0.553 5.553 24 C 0.310 3.690 25 F -0.104 7.104 26 C 0.130 3.870 27 C 0.108 3.892 28 H 0.273 0.727 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.424 0.576 34 H 0.176 0.824 35 H 0.195 0.805 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.272 -15.673 -0.043 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.186 4.186 3 Si 0.813 3.187 4 H -0.207 1.207 5 H -0.175 1.175 6 H -0.177 1.177 7 C -0.601 4.601 8 H 0.119 0.881 9 C 0.349 3.651 10 O -0.518 6.518 11 N -0.382 5.382 12 C -0.019 4.019 13 C -0.025 4.025 14 N -0.348 5.348 15 C 0.416 3.584 16 O -0.478 6.478 17 N -0.319 5.319 18 C -0.004 4.004 19 C -0.055 4.055 20 C -0.175 4.175 21 C 0.159 3.841 22 F -0.085 7.085 23 N -0.273 5.273 24 C 0.154 3.846 25 F -0.083 7.083 26 C 0.006 3.994 27 C -0.016 4.016 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.137 0.863 33 H 0.266 0.734 34 H 0.193 0.807 35 H 0.212 0.788 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.723 -16.329 0.421 22.672 hybrid contribution -0.239 1.310 -0.074 1.334 sum 15.484 -15.019 0.347 21.574 Atomic orbital electron populations 1.70183 1.09615 1.28921 1.36593 1.26972 0.95411 1.04965 0.91267 0.85133 0.78226 0.74940 0.80441 1.20704 1.17528 1.17673 1.21472 0.94991 0.89418 1.54268 0.88123 1.18685 0.86557 0.84085 0.75818 1.90560 1.16773 1.87216 1.57249 1.48022 1.06477 1.05267 1.78479 1.22107 0.80407 1.01443 0.97937 1.22385 0.96945 0.82985 1.00214 1.47236 1.07058 1.05169 1.75299 1.15697 0.81121 0.83891 0.77681 1.90878 1.67732 1.31942 1.57294 1.42468 1.05269 1.07803 1.76391 1.18191 0.93822 0.89614 0.98789 1.21790 0.99227 0.90147 0.94312 1.22111 0.93357 1.01078 1.00920 1.17696 0.90289 0.81246 0.94841 1.91665 1.78520 1.43523 1.94793 1.65939 1.35512 1.00496 1.25368 1.17148 0.92215 0.83737 0.91539 1.91659 1.89181 1.54728 1.72714 1.21794 0.77840 1.01043 0.98681 1.21567 0.97672 0.84666 0.97709 0.91732 0.91558 0.87691 0.90369 0.86348 0.73385 0.80690 0.78785 0.91718 0.87621 0.91390 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.49 11.84 21.83 0.26 -48.23 16 2 C 0.03 1.52 5.50 85.30 0.47 1.99 16 3 Si 0.99 38.11 29.56 68.60 2.03 40.14 16 4 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 6 H -0.25 -9.03 7.11 99.48 0.71 -8.33 16 7 C -0.57 -29.16 8.86 24.83 0.22 -28.94 16 8 H 0.10 4.42 5.67 -2.91 -0.02 4.41 16 9 C 0.54 29.20 7.62 86.36 0.66 29.86 16 10 O -0.63 -40.36 14.45 -4.31 -0.06 -40.42 16 11 N -0.65 -26.24 2.94 -822.23 -2.42 -28.66 16 12 C 0.10 3.03 6.51 86.56 0.56 3.60 16 13 C 0.10 2.10 6.58 86.56 0.57 2.67 16 14 N -0.61 -15.05 2.95 -835.14 -2.46 -17.51 16 15 C 0.71 16.77 8.16 179.06 1.46 18.24 16 16 O -0.60 -16.81 13.21 -4.02 -0.05 -16.86 16 17 N -0.67 -11.83 5.15 -316.62 -1.63 -13.46 16 18 C 0.10 1.76 6.34 38.21 0.24 2.00 16 19 C -0.03 -0.44 8.81 22.56 0.20 -0.24 16 20 C -0.15 -1.97 10.07 22.40 0.23 -1.74 16 21 C 0.31 5.55 8.40 84.71 0.71 6.26 16 22 F -0.11 -1.88 17.29 44.97 0.78 -1.10 16 23 N -0.55 -12.06 10.38 -197.59 -2.05 -14.11 16 24 C 0.31 6.20 8.43 84.85 0.72 6.92 16 25 F -0.10 -2.06 16.99 44.97 0.76 -1.30 16 26 C 0.13 3.79 6.60 86.41 0.57 4.36 16 27 C 0.11 3.90 6.60 86.41 0.57 4.47 16 28 H 0.27 14.70 8.29 -92.71 -0.77 13.93 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.11 3.11 5.34 -2.39 -0.01 3.09 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 32 H 0.12 1.48 5.62 -2.39 -0.01 1.47 16 33 H 0.42 5.50 6.15 -92.71 -0.57 4.93 16 34 H 0.18 2.98 6.28 -2.91 -0.02 2.97 16 35 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.11 2.91 6.99 -2.39 -0.02 2.89 16 38 H 0.07 2.87 6.99 -2.39 -0.02 2.85 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -76.56 336.50 2.91 -73.65 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.59 Total: 18.43 kcal Atomic # 6 Polarization: 42.26 SS G_CDS: 7.17 Total: 49.44 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -8.30 Total: -121.98 kcal Atomic # 8 Polarization: -57.16 SS G_CDS: -0.12 Total: -57.28 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 1.54 Total: -2.40 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -76.56 2.91 -73.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879653799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.256 kcal (2) G-P(sol) polarization free energy of solvation -76.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds