Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86803 * 119.99712 * 2 1 4 4 H 1.48500 * 109.47091 * 269.99572 * 3 2 1 5 5 H 1.48500 * 109.47059 * 29.99610 * 3 2 1 6 6 H 1.48500 * 109.46914 * 149.99479 * 3 2 1 7 7 C 1.39890 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99743 * 197.94288 * 7 2 1 9 9 C 1.41211 * 120.00057 * 17.93689 * 7 2 1 10 10 C 1.40835 * 120.18038 * 24.55129 * 9 7 2 11 11 C 1.36430 * 119.81282 * 180.02562 * 10 9 7 12 12 C 1.39311 * 120.18635 * 359.97438 * 11 10 9 13 13 O 1.35682 * 119.81871 * 179.97438 * 12 11 10 14 14 S 1.52200 * 113.99851 * 90.00369 * 13 12 11 15 15 O 1.42097 * 104.27657 * 318.93263 * 14 13 12 16 16 O 1.42101 * 104.27307 * 191.07111 * 14 13 12 17 17 C 1.81397 * 104.44657 * 75.00111 * 14 13 12 18 18 C 1.53009 * 109.46886 * 179.97438 * 17 14 13 19 19 C 1.52999 * 109.47137 * 179.97438 * 18 17 14 20 20 H 1.09004 * 109.47963 * 54.97534 * 19 18 17 21 21 C 1.53091 * 109.48149 * 175.00199 * 19 18 17 22 22 C 1.53176 * 109.16318 * 177.59397 * 21 19 18 23 23 C 1.53181 * 109.03723 * 303.01590 * 22 21 19 24 24 C 1.53094 * 109.16074 * 56.97913 * 23 22 21 25 25 O 1.42902 * 109.41917 * 302.39428 * 24 23 22 26 26 C 1.39309 * 120.36456 * 0.26366 * 12 11 10 27 27 C 1.36437 * 120.18470 * 359.47829 * 26 12 11 28 28 H 0.96996 * 120.00236 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.08825 * 359.97438 * 10 9 7 30 30 H 1.08003 * 119.91081 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.47212 * 60.00122 * 17 14 13 32 32 H 1.08998 * 109.47418 * 299.99563 * 17 14 13 33 33 H 1.08998 * 109.46856 * 300.00054 * 18 17 14 34 34 H 1.09000 * 109.46976 * 60.00124 * 18 17 14 35 35 H 1.09004 * 109.51915 * 297.49752 * 21 19 18 36 36 H 1.08997 * 109.52385 * 57.68323 * 21 19 18 37 37 H 1.08999 * 109.54838 * 62.88269 * 22 21 19 38 38 H 1.09000 * 109.54219 * 183.06348 * 22 21 19 39 39 H 1.08997 * 109.52136 * 176.88797 * 23 22 21 40 40 H 1.09002 * 109.51817 * 297.07936 * 23 22 21 41 41 H 1.09001 * 109.47957 * 62.37929 * 24 23 22 42 42 H 1.09000 * 109.48157 * 182.39841 * 24 23 22 43 43 H 1.08003 * 119.91143 * 179.71600 * 26 12 11 44 44 H 1.07997 * 120.09769 * 180.25840 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4401 2.6527 0.7000 6 1 3.5402 1.4403 0.7002 7 6 2.0083 -1.2115 0.0005 8 1 3.0489 -1.2340 0.2887 9 6 1.3538 -2.4049 -0.3755 10 6 0.2248 -2.3585 -1.2162 11 6 -0.4022 -3.5161 -1.5744 12 6 0.0718 -4.7416 -1.1115 13 8 -0.5577 -5.8882 -1.4721 14 16 -0.0203 -6.5135 -2.7513 15 8 0.1987 -5.4079 -3.6167 16 8 -0.9695 -7.5204 -3.0747 17 6 1.5583 -7.2607 -2.2613 18 6 2.2044 -7.9303 -3.4760 19 6 3.5362 -8.5599 -3.0629 20 1 3.3729 -9.2402 -2.2269 21 6 4.1228 -9.3356 -4.2452 22 6 5.4836 -9.9123 -3.8428 23 6 6.3959 -8.7692 -3.3876 24 6 5.7215 -8.0153 -2.2384 25 8 4.4479 -7.5319 -2.6699 26 6 1.1849 -4.7959 -0.2757 27 6 1.8266 -3.6480 0.0877 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1441 -1.4092 -1.5755 30 1 -1.2678 -3.4824 -2.2194 31 1 1.3822 -8.0068 -1.4865 32 1 2.2226 -6.4869 -1.8764 33 1 1.5400 -8.7041 -3.8604 34 1 2.3805 -7.1845 -4.2511 35 1 3.4492 -10.1480 -4.5181 36 1 4.2484 -8.6645 -5.0948 37 1 5.3519 -10.6213 -3.0254 38 1 5.9315 -10.4199 -4.6972 39 1 7.3479 -9.1764 -3.0471 40 1 6.5674 -8.0866 -4.2199 41 1 5.5870 -8.6883 -1.3916 42 1 6.3471 -7.1745 -1.9386 43 1 1.5434 -5.7496 0.0826 44 1 2.6919 -3.6920 0.7324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881748669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -156.018004 kcal Electronic energy + Delta-G solvation = -27801.759530 eV Core-core repulsion = 23810.825754 eV Total energy + Delta-G solvation = -3990.933776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.75945 -39.61122 -36.96525 -36.50391 -35.43005 -34.36618 -33.80130 -33.73714 -30.28778 -29.87309 -29.47136 -25.75275 -25.46626 -23.97363 -22.18078 -21.60836 -21.27751 -20.50180 -19.40399 -17.76250 -17.54815 -16.90601 -16.63699 -16.53563 -16.03944 -15.49122 -14.86638 -14.81483 -14.73985 -14.31258 -14.17911 -13.95190 -13.65236 -13.02995 -12.92849 -12.60320 -12.46817 -12.32076 -12.21013 -12.10482 -12.02157 -11.61772 -11.51536 -11.42095 -11.41010 -11.39136 -11.27464 -11.19145 -11.06995 -10.97735 -10.68403 -10.55069 -10.11535 -10.03848 -9.61524 -9.53382 -9.36972 -7.86890 -7.63023 -7.10409 -4.66665 0.77483 2.37107 2.81446 2.91518 2.95493 2.96494 3.13835 3.62559 3.70485 4.14041 4.28331 4.48232 4.53062 4.59950 4.63203 4.67200 4.93507 4.96494 5.08404 5.12157 5.24326 5.35886 5.39947 5.48631 5.51479 5.61073 5.68092 5.74061 5.81565 5.85763 5.88497 6.02104 6.04475 6.08091 6.23358 6.69877 6.73890 6.87560 6.95804 7.14137 7.27133 7.51098 7.72516 7.73816 7.91525 8.29123 8.52035 8.61305 9.81986 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.003311 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.071759 B = 8454.138654 C =10229.328471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.432 4.432 8 H 0.088 0.912 9 C 0.121 3.879 10 C -0.161 4.161 11 C -0.056 4.056 12 C -0.101 4.101 13 O -0.641 6.641 14 S 2.569 3.431 15 O -0.956 6.956 16 O -0.965 6.965 17 C -0.654 4.654 18 C -0.100 4.100 19 C 0.098 3.902 20 H 0.061 0.939 21 C -0.155 4.155 22 C -0.122 4.122 23 C -0.158 4.158 24 C 0.060 3.940 25 O -0.371 6.371 26 C -0.081 4.081 27 C -0.212 4.212 28 H 0.289 0.711 29 H 0.129 0.871 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.527 -12.366 -3.736 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.460 4.460 8 H 0.106 0.894 9 C 0.117 3.883 10 C -0.181 4.181 11 C -0.077 4.077 12 C -0.146 4.146 13 O -0.601 6.601 14 S 2.668 3.332 15 O -0.954 6.954 16 O -0.963 6.963 17 C -0.778 4.778 18 C -0.139 4.139 19 C 0.040 3.960 20 H 0.079 0.921 21 C -0.193 4.193 22 C -0.159 4.159 23 C -0.195 4.195 24 C -0.017 4.017 25 O -0.290 6.290 26 C -0.101 4.101 27 C -0.232 4.232 28 H 0.100 0.900 29 H 0.146 0.854 30 H 0.121 0.879 31 H 0.144 0.856 32 H 0.163 0.837 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.113 0.887 43 H 0.121 0.879 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.525 -12.021 -4.066 15.288 hybrid contribution 0.950 -0.034 0.329 1.006 sum 9.475 -12.055 -3.737 15.782 Atomic orbital electron populations 1.69828 1.07868 1.30369 1.31031 1.26114 0.94893 1.02101 0.91942 0.86144 0.80441 0.79562 0.79781 1.18786 1.19971 1.18239 1.19830 0.98534 0.91110 1.36523 0.89354 1.17811 0.90683 0.92273 0.87562 1.20968 0.99242 0.96732 1.01164 1.20484 0.98361 0.91347 0.97502 1.17573 1.01844 0.80471 1.14710 1.85617 1.67476 1.45424 1.61534 1.06872 0.75954 0.74835 0.75548 1.93584 1.86043 1.49143 1.66644 1.93521 1.57921 1.62052 1.82844 1.30832 1.25210 1.13607 1.08134 1.21291 0.95431 1.01018 0.96122 1.22011 0.88905 0.89350 0.95763 0.92099 1.22266 0.97216 1.00526 0.99264 1.21579 0.95432 0.97596 1.01326 1.22210 0.99000 0.98319 1.00012 1.22568 0.84941 0.99064 0.95146 1.88017 1.23474 1.32269 1.85191 1.20392 0.94337 0.98387 0.97020 1.20586 1.03736 0.92028 1.06885 0.89977 0.85368 0.87880 0.85634 0.83689 0.89358 0.89403 0.90662 0.90631 0.91901 0.91481 0.91025 0.90916 0.93354 0.88675 0.87857 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.13 10.96 55.54 0.61 -17.52 16 2 C 0.07 1.62 5.13 -17.34 -0.09 1.53 16 3 Si 0.92 16.87 29.60 -169.99 -5.03 11.84 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 6 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 7 C -0.43 -10.33 9.04 -37.84 -0.34 -10.68 16 8 H 0.09 1.98 7.91 -52.49 -0.41 1.57 16 9 C 0.12 2.98 5.57 -106.80 -0.60 2.39 16 10 C -0.16 -4.04 8.64 -39.25 -0.34 -4.37 16 11 C -0.06 -1.36 8.97 -39.83 -0.36 -1.72 16 12 C -0.10 -2.30 4.82 -38.78 -0.19 -2.49 16 13 O -0.64 -13.49 10.03 -51.07 -0.51 -14.01 16 14 S 2.57 48.66 5.17 -107.50 -0.56 48.11 16 15 O -0.96 -20.94 16.25 -67.04 -1.09 -22.03 16 16 O -0.97 -19.81 18.09 -67.04 -1.21 -21.02 16 17 C -0.65 -9.62 5.35 37.16 0.20 -9.42 16 18 C -0.10 -1.29 4.93 -26.73 -0.13 -1.42 16 19 C 0.10 1.13 2.64 -26.68 -0.07 1.06 16 20 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 21 C -0.15 -1.43 5.42 -26.59 -0.14 -1.58 16 22 C -0.12 -0.97 6.03 -26.55 -0.16 -1.13 16 23 C -0.16 -1.30 6.14 -26.59 -0.16 -1.47 16 24 C 0.06 0.60 6.84 37.21 0.25 0.85 16 25 O -0.37 -4.90 9.94 -35.23 -0.35 -5.25 16 26 C -0.08 -1.71 8.38 -39.83 -0.33 -2.04 16 27 C -0.21 -4.75 9.74 -39.25 -0.38 -5.13 16 28 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 29 H 0.13 3.24 6.16 -52.49 -0.32 2.92 16 30 H 0.10 2.37 8.06 -52.48 -0.42 1.94 16 31 H 0.13 1.54 8.14 -51.92 -0.42 1.12 16 32 H 0.14 2.26 6.30 -51.92 -0.33 1.94 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.10 1.82 7.51 -52.48 -0.39 1.43 16 44 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -30.05 369.01 -11.94 -41.99 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.51 Total: 7.94 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: -2.84 Total: -35.61 kcal Atomic # 7 Polarization: -18.13 SS G_CDS: 0.61 Total: -17.52 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -3.17 Total: -62.31 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.84 kcal Atomic # 16 Polarization: 48.66 SS G_CDS: -0.56 Total: 48.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.05 -11.94 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881748669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.029 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds