Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86803 * 119.99712 * 2 1 4 4 H 1.48500 * 109.47091 * 269.99572 * 3 2 1 5 5 H 1.48500 * 109.47059 * 29.99610 * 3 2 1 6 6 H 1.48500 * 109.46914 * 149.99479 * 3 2 1 7 7 C 1.39890 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99743 * 197.94288 * 7 2 1 9 9 C 1.41211 * 120.00057 * 17.93689 * 7 2 1 10 10 C 1.40835 * 120.18038 * 24.55129 * 9 7 2 11 11 C 1.36430 * 119.81282 * 180.02562 * 10 9 7 12 12 C 1.39311 * 120.18635 * 359.97438 * 11 10 9 13 13 O 1.35682 * 119.81871 * 179.97438 * 12 11 10 14 14 S 1.52200 * 113.99851 * 90.00369 * 13 12 11 15 15 O 1.42097 * 104.27657 * 318.93263 * 14 13 12 16 16 O 1.42101 * 104.27307 * 191.07111 * 14 13 12 17 17 C 1.81397 * 104.44657 * 75.00111 * 14 13 12 18 18 C 1.53009 * 109.46886 * 179.97438 * 17 14 13 19 19 C 1.52999 * 109.47137 * 179.97438 * 18 17 14 20 20 H 1.09004 * 109.47963 * 54.97534 * 19 18 17 21 21 C 1.53091 * 109.48149 * 175.00199 * 19 18 17 22 22 C 1.53176 * 109.16318 * 177.59397 * 21 19 18 23 23 C 1.53181 * 109.03723 * 303.01590 * 22 21 19 24 24 C 1.53094 * 109.16074 * 56.97913 * 23 22 21 25 25 O 1.42902 * 109.41917 * 302.39428 * 24 23 22 26 26 C 1.39309 * 120.36456 * 0.26366 * 12 11 10 27 27 C 1.36437 * 120.18470 * 359.47829 * 26 12 11 28 28 H 0.96996 * 120.00236 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.08825 * 359.97438 * 10 9 7 30 30 H 1.08003 * 119.91081 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.47212 * 60.00122 * 17 14 13 32 32 H 1.08998 * 109.47418 * 299.99563 * 17 14 13 33 33 H 1.08998 * 109.46856 * 300.00054 * 18 17 14 34 34 H 1.09000 * 109.46976 * 60.00124 * 18 17 14 35 35 H 1.09004 * 109.51915 * 297.49752 * 21 19 18 36 36 H 1.08997 * 109.52385 * 57.68323 * 21 19 18 37 37 H 1.08999 * 109.54838 * 62.88269 * 22 21 19 38 38 H 1.09000 * 109.54219 * 183.06348 * 22 21 19 39 39 H 1.08997 * 109.52136 * 176.88797 * 23 22 21 40 40 H 1.09002 * 109.51817 * 297.07936 * 23 22 21 41 41 H 1.09001 * 109.47957 * 62.37929 * 24 23 22 42 42 H 1.09000 * 109.48157 * 182.39841 * 24 23 22 43 43 H 1.08003 * 119.91143 * 179.71600 * 26 12 11 44 44 H 1.07997 * 120.09769 * 180.25840 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4401 2.6527 0.7000 6 1 3.5402 1.4403 0.7002 7 6 2.0083 -1.2115 0.0005 8 1 3.0489 -1.2340 0.2887 9 6 1.3538 -2.4049 -0.3755 10 6 0.2248 -2.3585 -1.2162 11 6 -0.4022 -3.5161 -1.5744 12 6 0.0718 -4.7416 -1.1115 13 8 -0.5577 -5.8882 -1.4721 14 16 -0.0203 -6.5135 -2.7513 15 8 0.1987 -5.4079 -3.6167 16 8 -0.9695 -7.5204 -3.0747 17 6 1.5583 -7.2607 -2.2613 18 6 2.2044 -7.9303 -3.4760 19 6 3.5362 -8.5599 -3.0629 20 1 3.3729 -9.2402 -2.2269 21 6 4.1228 -9.3356 -4.2452 22 6 5.4836 -9.9123 -3.8428 23 6 6.3959 -8.7692 -3.3876 24 6 5.7215 -8.0153 -2.2384 25 8 4.4479 -7.5319 -2.6699 26 6 1.1849 -4.7959 -0.2757 27 6 1.8266 -3.6480 0.0877 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1441 -1.4092 -1.5755 30 1 -1.2678 -3.4824 -2.2194 31 1 1.3822 -8.0068 -1.4865 32 1 2.2226 -6.4869 -1.8764 33 1 1.5400 -8.7041 -3.8604 34 1 2.3805 -7.1845 -4.2511 35 1 3.4492 -10.1480 -4.5181 36 1 4.2484 -8.6645 -5.0948 37 1 5.3519 -10.6213 -3.0254 38 1 5.9315 -10.4199 -4.6972 39 1 7.3479 -9.1764 -3.0471 40 1 6.5674 -8.0866 -4.2199 41 1 5.5870 -8.6883 -1.3916 42 1 6.3471 -7.1745 -1.9386 43 1 1.5434 -5.7496 0.0826 44 1 2.6919 -3.6920 0.7324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881748669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = -173.707227 kcal Electronic energy + Delta-G solvation = -27802.526593 eV Core-core repulsion = 23810.825754 eV Total energy + Delta-G solvation = -3991.700838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.46117 -40.40310 -38.71782 -38.13794 -37.06698 -35.53098 -35.28539 -34.53142 -31.76153 -31.38010 -30.94920 -27.23987 -26.66018 -24.76315 -23.67482 -23.22268 -22.62095 -21.22937 -20.99845 -19.46133 -19.18278 -18.46889 -18.09150 -17.52013 -17.19009 -16.89293 -16.26176 -16.03471 -15.82740 -15.64622 -15.37587 -14.92562 -14.76176 -14.64212 -14.19244 -13.97135 -13.81465 -13.79279 -13.67132 -13.43021 -13.23031 -13.18646 -13.12701 -13.05823 -12.82816 -12.62326 -12.47152 -12.35775 -12.14366 -11.95598 -11.87526 -11.75306 -11.43059 -11.34679 -11.10669 -11.08443 -10.33164 -9.68413 -9.43618 -8.80905 -6.48255 -0.74186 0.64335 1.00944 1.39870 1.42172 1.54965 1.55760 2.16506 2.55095 2.71738 2.83211 3.20110 3.44960 3.53181 3.77820 3.86155 3.95783 4.00531 4.14988 4.20806 4.23842 4.25939 4.28256 4.45212 4.49774 4.57611 4.74083 4.77844 4.85188 4.91458 4.93696 4.97692 4.98207 5.08874 5.09550 5.15306 5.18440 5.22013 5.41021 5.48647 5.73184 5.88295 5.94107 6.11488 6.35608 6.49002 6.72958 6.81377 8.14916 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.003311 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.071759 B = 8454.138654 C =10229.328471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.032 3.968 3 Si 0.990 3.010 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.249 1.249 7 C -0.460 4.460 8 H 0.098 0.902 9 C 0.093 3.907 10 C -0.184 4.184 11 C -0.077 4.077 12 C -0.107 4.107 13 O -0.653 6.653 14 S 2.576 3.424 15 O -0.993 6.993 16 O -0.982 6.982 17 C -0.625 4.625 18 C -0.111 4.111 19 C 0.096 3.904 20 H 0.077 0.923 21 C -0.155 4.155 22 C -0.120 4.120 23 C -0.156 4.156 24 C 0.052 3.948 25 O -0.402 6.402 26 C -0.075 4.075 27 C -0.220 4.220 28 H 0.296 0.704 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.161 0.839 32 H 0.142 0.858 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.145 0.855 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.733 -14.305 -3.122 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.186 4.186 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.173 1.173 7 C -0.488 4.488 8 H 0.116 0.884 9 C 0.090 3.910 10 C -0.204 4.204 11 C -0.097 4.097 12 C -0.151 4.151 13 O -0.613 6.613 14 S 2.678 3.322 15 O -0.991 6.991 16 O -0.981 6.981 17 C -0.755 4.755 18 C -0.150 4.150 19 C 0.038 3.962 20 H 0.095 0.905 21 C -0.193 4.193 22 C -0.158 4.158 23 C -0.193 4.193 24 C -0.025 4.025 25 O -0.322 6.322 26 C -0.095 4.095 27 C -0.240 4.240 28 H 0.108 0.892 29 H 0.131 0.869 30 H 0.118 0.882 31 H 0.179 0.821 32 H 0.160 0.840 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.163 0.837 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.685 -13.917 -3.440 17.880 hybrid contribution 0.248 0.366 0.089 0.451 sum 10.933 -13.552 -3.351 17.732 Atomic orbital electron populations 1.69878 1.09420 1.31696 1.31602 1.27004 0.95516 1.05273 0.90854 0.85063 0.79282 0.75010 0.79663 1.18802 1.19217 1.17257 1.20141 0.99138 0.91813 1.37699 0.88410 1.18169 0.90939 0.93892 0.88048 1.20919 1.00511 0.96408 1.02537 1.20643 0.98703 0.92297 0.98075 1.17652 1.02095 0.80417 1.14967 1.85497 1.68803 1.44846 1.62157 1.06211 0.77309 0.74244 0.74390 1.93552 1.87021 1.51034 1.67496 1.93500 1.59972 1.61795 1.82785 1.30558 1.20689 1.14168 1.10066 1.21513 0.96985 1.01522 0.94945 1.22093 0.87801 0.89172 0.97172 0.90547 1.22277 0.98365 1.00627 0.98039 1.21599 0.94489 0.97504 1.02192 1.22194 0.99838 0.98200 0.99086 1.22758 0.83959 0.99607 0.96147 1.87968 1.24855 1.33770 1.85607 1.20731 0.93186 0.99888 0.95743 1.20882 1.04514 0.91579 1.07007 0.89244 0.86863 0.88209 0.82122 0.83953 0.87135 0.90375 0.89016 0.91583 0.90860 0.90265 0.89200 0.91969 0.92175 0.88636 0.83727 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.10 10.96 21.82 0.24 -38.86 16 2 C 0.03 1.48 5.13 85.23 0.44 1.92 16 3 Si 0.99 34.51 29.60 68.60 2.03 36.54 16 4 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 5 H -0.27 -8.93 7.11 99.48 0.71 -8.22 16 6 H -0.25 -8.24 7.11 99.48 0.71 -7.54 16 7 C -0.46 -22.40 9.04 23.40 0.21 -22.19 16 8 H 0.10 4.39 7.91 -2.91 -0.02 4.37 16 9 C 0.09 4.72 5.57 -21.28 -0.12 4.61 16 10 C -0.18 -9.66 8.64 22.48 0.19 -9.47 16 11 C -0.08 -3.87 8.97 22.11 0.20 -3.67 16 12 C -0.11 -4.92 4.82 22.79 0.11 -4.81 16 13 O -0.65 -27.31 10.03 -59.09 -0.59 -27.91 16 14 S 2.58 95.96 5.17 -56.49 -0.29 95.67 16 15 O -0.99 -44.37 16.25 -118.57 -1.93 -46.29 16 16 O -0.98 -39.47 18.09 -118.57 -2.15 -41.61 16 17 C -0.63 -16.74 5.35 71.99 0.39 -16.36 16 18 C -0.11 -2.58 4.93 30.60 0.15 -2.43 16 19 C 0.10 1.92 2.64 30.62 0.08 2.00 16 20 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 21 C -0.16 -2.43 5.42 30.68 0.17 -2.26 16 22 C -0.12 -1.52 6.03 30.71 0.19 -1.33 16 23 C -0.16 -2.18 6.14 30.69 0.19 -1.99 16 24 C 0.05 0.91 6.84 72.01 0.49 1.40 16 25 O -0.40 -9.78 9.94 -148.98 -1.48 -11.27 16 26 C -0.08 -3.10 8.38 22.11 0.19 -2.92 16 27 C -0.22 -9.75 9.74 22.48 0.22 -9.53 16 28 H 0.30 12.94 8.30 -92.71 -0.77 12.17 16 29 H 0.11 6.13 6.16 -2.91 -0.02 6.11 16 30 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 31 H 0.16 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.14 4.08 6.30 -2.39 -0.02 4.07 16 33 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.15 4.62 7.51 -2.91 -0.02 4.60 16 44 H 0.13 5.04 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -67.01 369.01 -0.09 -67.10 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.99 Total: 33.67 kcal Atomic # 6 Polarization: -70.12 SS G_CDS: 3.09 Total: -67.04 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.24 Total: -38.86 kcal Atomic # 8 Polarization: -120.93 SS G_CDS: -6.15 Total: -127.08 kcal Atomic # 14 Polarization: 34.51 SS G_CDS: 2.03 Total: 36.54 kcal Atomic # 16 Polarization: 95.96 SS G_CDS: -0.29 Total: 95.67 kcal Total: -67.01 -0.09 -67.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881748669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.611 kcal (2) G-P(sol) polarization free energy of solvation -67.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds