Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86803 * 120.00283 * 2 1 4 4 H 1.48500 * 109.46737 * 274.69431 * 3 2 1 5 5 H 1.48497 * 109.46959 * 34.68870 * 3 2 1 6 6 H 1.48494 * 109.47443 * 154.69323 * 3 2 1 7 7 C 1.39940 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99809 * 197.88145 * 7 2 1 9 9 C 1.41401 * 119.99876 * 17.87441 * 7 2 1 10 10 C 1.40767 * 120.21900 * 204.42746 * 9 7 2 11 11 C 1.37626 * 119.85610 * 179.97438 * 10 9 7 12 12 C 1.38563 * 120.30442 * 0.27471 * 11 10 9 13 13 C 1.39111 * 120.44256 * 359.45017 * 12 11 10 14 14 O 1.35902 * 119.92994 * 180.27578 * 13 12 11 15 15 S 1.52205 * 114.00269 * 270.27234 * 14 13 12 16 16 O 1.42098 * 104.27965 * 191.07490 * 15 14 13 17 17 O 1.42100 * 104.27696 * 318.93060 * 15 14 13 18 18 C 1.81403 * 104.44865 * 75.00006 * 15 14 13 19 19 C 1.52997 * 109.47192 * 180.02562 * 18 15 14 20 20 C 1.52998 * 109.46911 * 179.97438 * 19 18 15 21 21 H 1.08989 * 109.48498 * 305.02038 * 20 19 18 22 22 C 1.53098 * 109.47631 * 184.99832 * 20 19 18 23 23 C 1.53174 * 109.16082 * 182.40987 * 22 20 19 24 24 C 1.53181 * 109.03982 * 56.98278 * 23 22 20 25 25 C 1.53094 * 109.15854 * 303.02112 * 24 23 22 26 26 O 1.42900 * 109.41798 * 57.60868 * 25 24 23 27 27 C 1.38136 * 120.13793 * 0.55208 * 13 12 11 28 28 H 0.96998 * 119.99976 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.06916 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.84582 * 180.02562 * 11 10 9 31 31 H 1.08002 * 119.77616 * 179.72307 * 12 11 10 32 32 H 1.09004 * 109.46995 * 300.00530 * 18 15 14 33 33 H 1.09002 * 109.46990 * 60.00035 * 18 15 14 34 34 H 1.09002 * 109.46834 * 300.00012 * 19 18 15 35 35 H 1.08997 * 109.46895 * 59.99876 * 19 18 15 36 36 H 1.08997 * 109.52422 * 302.31205 * 22 20 19 37 37 H 1.08997 * 109.52345 * 62.44050 * 22 20 19 38 38 H 1.09005 * 109.54529 * 176.84717 * 23 22 20 39 39 H 1.09002 * 109.54843 * 297.02417 * 23 22 20 40 40 H 1.09002 * 109.52178 * 62.92309 * 24 23 22 41 41 H 1.09001 * 109.52826 * 183.11343 * 24 23 22 42 42 H 1.09005 * 109.47584 * 177.58756 * 25 24 23 43 43 H 1.09000 * 109.48019 * 297.61732 * 25 24 23 44 44 H 1.07994 * 120.15648 * 179.70679 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3906 2.1036 -1.3954 5 1 1.4929 2.6220 0.7968 6 1 3.5860 1.4136 0.5984 7 6 2.0080 -1.2119 -0.0005 8 1 3.0488 -1.2346 0.2866 9 6 1.3522 -2.4067 -0.3769 10 6 1.8258 -3.6500 0.0829 11 6 1.1815 -4.8083 -0.2877 12 6 0.0719 -4.7568 -1.1160 13 6 -0.4103 -3.5346 -1.5731 14 8 -1.5028 -3.4958 -2.3806 15 16 -1.1784 -3.5781 -3.8654 16 8 -2.4038 -3.2586 -4.5101 17 8 -0.0323 -2.7525 -4.0200 18 6 -0.7502 -5.3194 -4.1393 19 6 -0.3995 -5.5327 -5.6132 20 6 -0.0376 -7.0012 -5.8440 21 1 0.7608 -7.2906 -5.1609 22 6 0.4330 -7.1900 -7.2886 23 6 0.7357 -8.6722 -7.5290 24 6 -0.5167 -9.4957 -7.2134 25 6 -0.9506 -9.2177 -5.7718 26 8 -1.1864 -7.8178 -5.6082 27 6 0.2223 -2.3607 -1.2127 28 1 -0.4850 0.8400 0.0004 29 1 2.6925 -3.6948 0.7257 30 1 1.5447 -5.7620 0.0655 31 1 -0.4246 -5.6713 -1.4051 32 1 0.1069 -5.5845 -3.5202 33 1 -1.5994 -5.9487 -3.8728 34 1 -1.2563 -5.2674 -6.2326 35 1 0.4498 -4.9034 -5.8793 36 1 -0.3500 -6.8626 -7.9725 37 1 1.3343 -6.6010 -7.4580 38 1 1.0177 -8.8224 -8.5712 39 1 1.5537 -8.9871 -6.8810 40 1 -1.3189 -9.2148 -7.8959 41 1 -0.2939 -10.5564 -7.3286 42 1 -1.8662 -9.7682 -5.5553 43 1 -0.1642 -9.5364 -5.0876 44 1 -0.1489 -1.4121 -1.5712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882126933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -153.958980 kcal Electronic energy + Delta-G solvation = -27877.507980 eV Core-core repulsion = 23886.663490 eV Total energy + Delta-G solvation = -3990.844490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.93138 -39.67275 -36.89171 -36.61253 -35.55815 -34.43054 -33.85707 -33.75660 -30.34005 -29.85604 -29.04437 -25.92900 -25.46522 -24.02326 -22.41452 -21.87029 -21.17566 -20.54497 -19.39775 -17.99095 -17.43136 -16.79253 -16.63585 -16.32530 -16.02766 -15.41784 -14.97924 -14.91343 -14.82274 -14.52858 -14.28199 -13.98917 -13.71878 -13.11845 -12.98653 -12.72784 -12.64976 -12.36799 -12.28253 -12.17238 -11.72830 -11.67455 -11.62189 -11.51010 -11.45854 -11.27322 -11.21015 -11.13883 -11.10429 -10.82687 -10.64523 -10.52393 -10.15009 -10.09398 -9.75821 -9.60656 -9.34175 -7.74155 -7.69456 -6.95760 -4.58046 0.64773 2.36717 2.67171 2.91106 3.01361 3.05750 3.09185 3.55154 3.82321 4.05502 4.34330 4.42851 4.48525 4.54569 4.56394 4.62159 4.88342 4.91848 4.97542 5.09574 5.20559 5.35052 5.38815 5.45097 5.48187 5.58850 5.64079 5.67797 5.74789 5.82396 5.88266 5.94458 6.03421 6.09518 6.16241 6.54726 6.79417 6.82021 7.03651 7.05365 7.29578 7.47842 7.60261 7.77007 7.99338 8.33262 8.63242 8.64536 9.98814 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.002923 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.661424 B = 9576.611051 C = 9930.717354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.447 4.447 8 H 0.088 0.912 9 C 0.116 3.884 10 C -0.219 4.219 11 C -0.073 4.073 12 C -0.268 4.268 13 C 0.069 3.931 14 O -0.661 6.661 15 S 2.593 3.407 16 O -0.951 6.951 17 O -0.947 6.947 18 C -0.652 4.652 19 C -0.101 4.101 20 C 0.099 3.901 21 H 0.065 0.935 22 C -0.155 4.155 23 C -0.122 4.122 24 C -0.157 4.157 25 C 0.060 3.940 26 O -0.376 6.376 27 C -0.122 4.122 28 H 0.288 0.712 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.324 -13.804 -10.718 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.475 4.475 8 H 0.106 0.894 9 C 0.113 3.887 10 C -0.239 4.239 11 C -0.091 4.091 12 C -0.290 4.290 13 C 0.028 3.972 14 O -0.621 6.621 15 S 2.689 3.311 16 O -0.949 6.949 17 O -0.946 6.946 18 C -0.777 4.777 19 C -0.139 4.139 20 C 0.040 3.960 21 H 0.083 0.917 22 C -0.193 4.193 23 C -0.160 4.160 24 C -0.195 4.195 25 C -0.017 4.017 26 O -0.295 6.295 27 C -0.144 4.144 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.572 -12.867 -10.731 16.765 hybrid contribution 0.457 -0.204 -0.102 0.511 sum 1.029 -13.071 -10.833 17.008 Atomic orbital electron populations 1.69777 1.07836 1.30183 1.32782 1.26058 0.94850 1.01998 0.91935 0.86174 0.80456 0.79939 0.79542 1.18902 1.20041 1.18289 1.19680 0.98451 0.90863 1.38534 0.89413 1.17457 0.90194 0.92790 0.88263 1.21112 1.03983 0.92527 1.06266 1.20342 0.94744 0.97194 0.96849 1.20348 1.03138 0.94285 1.11204 1.18077 0.85341 0.95741 0.98037 1.85614 1.46229 1.91546 1.38730 1.05508 0.74353 0.77104 0.74123 1.93564 1.44902 1.82750 1.73677 1.93655 1.53282 1.63362 1.84271 1.30862 1.13301 1.28485 1.05074 1.21311 1.03557 0.96252 0.92815 1.22026 0.88383 0.90336 0.95257 0.91673 1.22262 1.02440 0.97072 0.97493 1.21584 0.97619 0.94864 1.01933 1.22205 0.98648 1.00384 0.98264 1.22564 1.01524 0.82465 0.95169 1.87952 1.34637 1.16506 1.90411 1.21532 0.97823 0.96014 0.99041 0.90129 0.87891 0.87951 0.87853 0.84175 0.84397 0.89620 0.88800 0.90726 0.90410 0.91427 0.91729 0.91017 0.91002 0.88887 0.93177 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.05 10.95 55.55 0.61 -19.44 16 2 C 0.07 1.75 5.14 -17.34 -0.09 1.67 16 3 Si 0.92 18.21 29.60 -169.99 -5.03 13.18 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.45 -11.34 9.05 -37.74 -0.34 -11.68 16 8 H 0.09 2.08 7.91 -52.49 -0.42 1.67 16 9 C 0.12 2.99 5.57 -106.84 -0.60 2.39 16 10 C -0.22 -4.96 9.79 -38.85 -0.38 -5.34 16 11 C -0.07 -1.48 10.02 -39.68 -0.40 -1.88 16 12 C -0.27 -5.60 8.45 -39.14 -0.33 -5.93 16 13 C 0.07 1.63 4.80 -39.29 -0.19 1.44 16 14 O -0.66 -14.63 10.04 -51.76 -0.52 -15.15 16 15 S 2.59 50.45 5.17 -107.50 -0.56 49.89 16 16 O -0.95 -20.23 18.09 -67.04 -1.21 -21.44 16 17 O -0.95 -21.08 16.25 -67.04 -1.09 -22.17 16 18 C -0.65 -9.50 5.34 37.16 0.20 -9.30 16 19 C -0.10 -1.27 4.93 -26.73 -0.13 -1.40 16 20 C 0.10 1.10 2.64 -26.68 -0.07 1.02 16 21 H 0.07 0.70 8.14 -51.94 -0.42 0.27 16 22 C -0.15 -1.39 5.42 -26.59 -0.14 -1.54 16 23 C -0.12 -0.93 6.03 -26.55 -0.16 -1.09 16 24 C -0.16 -1.18 6.14 -26.59 -0.16 -1.35 16 25 C 0.06 0.53 6.84 37.21 0.25 0.79 16 26 O -0.38 -4.54 9.95 -35.23 -0.35 -4.89 16 27 C -0.12 -3.21 7.68 -38.73 -0.30 -3.51 16 28 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 29 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.10 1.81 7.45 -52.49 -0.39 1.42 16 32 H 0.14 1.96 6.57 -51.92 -0.34 1.62 16 33 H 0.14 1.86 7.83 -51.92 -0.41 1.46 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.13 3.76 6.16 -52.49 -0.32 3.43 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -31.24 369.10 -11.93 -43.18 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.51 Total: 6.99 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: -2.84 Total: -35.70 kcal Atomic # 7 Polarization: -20.05 SS G_CDS: 0.61 Total: -19.44 kcal Atomic # 8 Polarization: -60.49 SS G_CDS: -3.17 Total: -63.66 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Atomic # 16 Polarization: 50.45 SS G_CDS: -0.56 Total: 49.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.24 -11.93 -43.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882126933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.783 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds