Wall clock time and date at job start Sat Apr 11 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86803 * 120.00283 * 2 1 4 4 H 1.48500 * 109.46737 * 274.69431 * 3 2 1 5 5 H 1.48497 * 109.46959 * 34.68870 * 3 2 1 6 6 H 1.48494 * 109.47443 * 154.69323 * 3 2 1 7 7 C 1.39940 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99809 * 197.88145 * 7 2 1 9 9 C 1.41401 * 119.99876 * 17.87441 * 7 2 1 10 10 C 1.40767 * 120.21900 * 204.42746 * 9 7 2 11 11 C 1.37626 * 119.85610 * 179.97438 * 10 9 7 12 12 C 1.38563 * 120.30442 * 0.27471 * 11 10 9 13 13 C 1.39111 * 120.44256 * 359.45017 * 12 11 10 14 14 O 1.35902 * 119.92994 * 180.27578 * 13 12 11 15 15 S 1.52205 * 114.00269 * 270.27234 * 14 13 12 16 16 O 1.42098 * 104.27965 * 191.07490 * 15 14 13 17 17 O 1.42100 * 104.27696 * 318.93060 * 15 14 13 18 18 C 1.81403 * 104.44865 * 75.00006 * 15 14 13 19 19 C 1.52997 * 109.47192 * 180.02562 * 18 15 14 20 20 C 1.52998 * 109.46911 * 179.97438 * 19 18 15 21 21 H 1.08989 * 109.48498 * 305.02038 * 20 19 18 22 22 C 1.53098 * 109.47631 * 184.99832 * 20 19 18 23 23 C 1.53174 * 109.16082 * 182.40987 * 22 20 19 24 24 C 1.53181 * 109.03982 * 56.98278 * 23 22 20 25 25 C 1.53094 * 109.15854 * 303.02112 * 24 23 22 26 26 O 1.42900 * 109.41798 * 57.60868 * 25 24 23 27 27 C 1.38136 * 120.13793 * 0.55208 * 13 12 11 28 28 H 0.96998 * 119.99976 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.06916 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.84582 * 180.02562 * 11 10 9 31 31 H 1.08002 * 119.77616 * 179.72307 * 12 11 10 32 32 H 1.09004 * 109.46995 * 300.00530 * 18 15 14 33 33 H 1.09002 * 109.46990 * 60.00035 * 18 15 14 34 34 H 1.09002 * 109.46834 * 300.00012 * 19 18 15 35 35 H 1.08997 * 109.46895 * 59.99876 * 19 18 15 36 36 H 1.08997 * 109.52422 * 302.31205 * 22 20 19 37 37 H 1.08997 * 109.52345 * 62.44050 * 22 20 19 38 38 H 1.09005 * 109.54529 * 176.84717 * 23 22 20 39 39 H 1.09002 * 109.54843 * 297.02417 * 23 22 20 40 40 H 1.09002 * 109.52178 * 62.92309 * 24 23 22 41 41 H 1.09001 * 109.52826 * 183.11343 * 24 23 22 42 42 H 1.09005 * 109.47584 * 177.58756 * 25 24 23 43 43 H 1.09000 * 109.48019 * 297.61732 * 25 24 23 44 44 H 1.07994 * 120.15648 * 179.70679 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3906 2.1036 -1.3954 5 1 1.4929 2.6220 0.7968 6 1 3.5860 1.4136 0.5984 7 6 2.0080 -1.2119 -0.0005 8 1 3.0488 -1.2346 0.2866 9 6 1.3522 -2.4067 -0.3769 10 6 1.8258 -3.6500 0.0829 11 6 1.1815 -4.8083 -0.2877 12 6 0.0719 -4.7568 -1.1160 13 6 -0.4103 -3.5346 -1.5731 14 8 -1.5028 -3.4958 -2.3806 15 16 -1.1784 -3.5781 -3.8654 16 8 -2.4038 -3.2586 -4.5101 17 8 -0.0323 -2.7525 -4.0200 18 6 -0.7502 -5.3194 -4.1393 19 6 -0.3995 -5.5327 -5.6132 20 6 -0.0376 -7.0012 -5.8440 21 1 0.7608 -7.2906 -5.1609 22 6 0.4330 -7.1900 -7.2886 23 6 0.7357 -8.6722 -7.5290 24 6 -0.5167 -9.4957 -7.2134 25 6 -0.9506 -9.2177 -5.7718 26 8 -1.1864 -7.8178 -5.6082 27 6 0.2223 -2.3607 -1.2127 28 1 -0.4850 0.8400 0.0004 29 1 2.6925 -3.6948 0.7257 30 1 1.5447 -5.7620 0.0655 31 1 -0.4246 -5.6713 -1.4051 32 1 0.1069 -5.5845 -3.5202 33 1 -1.5994 -5.9487 -3.8728 34 1 -1.2563 -5.2674 -6.2326 35 1 0.4498 -4.9034 -5.8793 36 1 -0.3500 -6.8626 -7.9725 37 1 1.3343 -6.6010 -7.4580 38 1 1.0177 -8.8224 -8.5712 39 1 1.5537 -8.9871 -6.8810 40 1 -1.3189 -9.2148 -7.8959 41 1 -0.2939 -10.5564 -7.3286 42 1 -1.8662 -9.7682 -5.5553 43 1 -0.1642 -9.5364 -5.0876 44 1 -0.1489 -1.4121 -1.5712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882126933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:11 Heat of formation + Delta-G solvation = -173.361690 kcal Electronic energy + Delta-G solvation = -27878.349344 eV Core-core repulsion = 23886.663490 eV Total energy + Delta-G solvation = -3991.685855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.65405 -40.41931 -38.64204 -38.27617 -37.21218 -35.61116 -35.32556 -34.53906 -31.77925 -31.06860 -30.81768 -27.44925 -26.63957 -24.77704 -24.05246 -23.22492 -22.58870 -21.23809 -21.01078 -19.69260 -19.03726 -18.29173 -18.02802 -17.48364 -17.14031 -16.87061 -16.59968 -16.17406 -16.00843 -15.64315 -15.38136 -14.97771 -14.81954 -14.72895 -14.38363 -14.04127 -13.95428 -13.70189 -13.48726 -13.46105 -13.34432 -13.24631 -13.18580 -12.97727 -12.82497 -12.54575 -12.52009 -12.16105 -12.12811 -12.00517 -11.90008 -11.88030 -11.52456 -11.41818 -11.16092 -11.10056 -10.35092 -9.55252 -9.46904 -8.75123 -6.47121 -0.89296 0.62255 0.90835 1.25376 1.36253 1.48261 1.51552 2.15966 2.56698 2.61061 2.79574 3.06212 3.39593 3.51343 3.74766 3.78565 3.95816 3.99783 4.13945 4.21099 4.26649 4.28553 4.41450 4.46557 4.49158 4.57631 4.70451 4.73412 4.82153 4.83536 4.91027 4.96710 4.99813 5.05335 5.08799 5.15554 5.21608 5.22114 5.40776 5.53807 5.69567 5.81313 5.94657 6.20012 6.31401 6.50390 6.78890 6.82855 8.22179 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.002923 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.661424 B = 9576.611051 C = 9930.717354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.027 3.973 3 Si 0.985 3.015 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.245 1.245 7 C -0.484 4.484 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.222 4.222 11 C -0.066 4.066 12 C -0.253 4.253 13 C 0.062 3.938 14 O -0.678 6.678 15 S 2.586 3.414 16 O -0.979 6.979 17 O -0.984 6.984 18 C -0.614 4.614 19 C -0.113 4.113 20 C 0.099 3.901 21 H 0.074 0.926 22 C -0.156 4.156 23 C -0.122 4.122 24 C -0.155 4.155 25 C 0.051 3.949 26 O -0.400 6.400 27 C -0.169 4.169 28 H 0.290 0.710 29 H 0.122 0.878 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.696 -17.111 -11.099 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.189 4.189 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.168 1.168 7 C -0.513 4.513 8 H 0.113 0.887 9 C 0.083 3.917 10 C -0.242 4.242 11 C -0.084 4.084 12 C -0.274 4.274 13 C 0.022 3.978 14 O -0.639 6.639 15 S 2.688 3.312 16 O -0.977 6.977 17 O -0.983 6.983 18 C -0.745 4.745 19 C -0.151 4.151 20 C 0.040 3.960 21 H 0.092 0.908 22 C -0.194 4.194 23 C -0.160 4.160 24 C -0.193 4.193 25 C -0.025 4.025 26 O -0.320 6.320 27 C -0.191 4.191 28 H 0.101 0.899 29 H 0.140 0.860 30 H 0.172 0.828 31 H 0.164 0.836 32 H 0.174 0.826 33 H 0.175 0.825 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.077 0.923 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.937 -16.129 -11.083 19.666 hybrid contribution -0.047 0.539 -0.075 0.546 sum 1.889 -15.591 -11.158 19.265 Atomic orbital electron populations 1.69868 1.09486 1.31047 1.34653 1.26972 0.95477 1.05394 0.91032 0.85146 0.79632 0.75504 0.79258 1.19320 1.19164 1.16773 1.19985 0.98986 0.91877 1.40402 0.88725 1.17850 0.90594 0.94500 0.88799 1.21464 1.04488 0.92271 1.05948 1.20892 0.93672 0.98484 0.95377 1.20890 1.02648 0.94472 1.09351 1.18312 0.85177 0.96160 0.98163 1.85536 1.46286 1.92258 1.39772 1.05506 0.73321 0.79452 0.72963 1.93519 1.46004 1.84580 1.73591 1.93614 1.53856 1.66439 1.84352 1.30532 1.14592 1.22181 1.07228 1.21539 1.04318 0.98254 0.91005 1.22031 0.88370 0.88781 0.96793 0.90797 1.22275 1.02669 0.98434 0.96000 1.21607 0.97818 0.93710 1.02818 1.22192 0.98387 1.01485 0.97197 1.22782 1.02412 0.81026 0.96263 1.87909 1.35296 1.18065 1.90733 1.21399 1.00090 0.95928 1.01663 0.89913 0.86020 0.82839 0.83575 0.82578 0.82479 0.89510 0.87679 0.91178 0.89465 0.90325 0.91095 0.91654 0.89206 0.88041 0.92344 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.07 10.95 21.83 0.24 -44.83 16 2 C 0.03 1.37 5.14 85.25 0.44 1.81 16 3 Si 0.98 38.65 29.60 68.60 2.03 40.68 16 4 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.24 -8.92 7.11 99.48 0.71 -8.21 16 7 C -0.48 -25.51 9.05 23.46 0.21 -25.30 16 8 H 0.09 4.61 7.91 -2.91 -0.02 4.59 16 9 C 0.09 4.52 5.57 -21.30 -0.12 4.40 16 10 C -0.22 -9.76 9.79 22.74 0.22 -9.54 16 11 C -0.07 -2.46 10.02 22.20 0.22 -2.23 16 12 C -0.25 -9.78 8.45 22.56 0.19 -9.59 16 13 C 0.06 2.97 4.80 22.46 0.11 3.08 16 14 O -0.68 -30.60 10.04 -61.54 -0.62 -31.22 16 15 S 2.59 101.90 5.17 -56.49 -0.29 101.61 16 16 O -0.98 -42.78 18.09 -118.57 -2.15 -44.93 16 17 O -0.98 -45.62 16.25 -118.57 -1.93 -47.55 16 18 C -0.61 -16.39 5.34 71.98 0.38 -16.00 16 19 C -0.11 -2.58 4.93 30.59 0.15 -2.43 16 20 C 0.10 1.90 2.64 30.63 0.08 1.98 16 21 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 22 C -0.16 -2.39 5.42 30.69 0.17 -2.22 16 23 C -0.12 -1.47 6.03 30.71 0.19 -1.29 16 24 C -0.15 -1.87 6.14 30.69 0.19 -1.68 16 25 C 0.05 0.76 6.84 72.01 0.49 1.26 16 26 O -0.40 -8.50 9.95 -148.98 -1.48 -9.98 16 27 C -0.17 -9.31 7.68 22.82 0.18 -9.14 16 28 H 0.29 14.44 8.30 -92.71 -0.77 13.67 16 29 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 30 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 31 H 0.15 4.36 7.45 -2.91 -0.02 4.34 16 32 H 0.16 3.76 6.57 -2.39 -0.02 3.75 16 33 H 0.16 3.72 7.83 -2.39 -0.02 3.70 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.10 6.06 6.16 -2.91 -0.02 6.05 16 Total: -1.00 -72.60 369.10 -0.10 -72.70 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.99 Total: 30.43 kcal Atomic # 6 Polarization: -70.00 SS G_CDS: 3.10 Total: -66.90 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.24 Total: -44.83 kcal Atomic # 8 Polarization: -127.51 SS G_CDS: -6.17 Total: -133.68 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Atomic # 16 Polarization: 101.90 SS G_CDS: -0.29 Total: 101.61 kcal Total: -72.60 -0.10 -72.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882126933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.661 kcal (2) G-P(sol) polarization free energy of solvation -72.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds