Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86802 * 120.00050 * 2 1 4 4 H 1.48495 * 109.46838 * 274.66252 * 3 2 1 5 5 H 1.48494 * 109.46898 * 34.65973 * 3 2 1 6 6 H 1.48498 * 109.46910 * 154.66060 * 3 2 1 7 7 C 1.39932 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99708 * 162.21274 * 7 2 1 9 9 C 1.41403 * 120.00649 * 342.21014 * 7 2 1 10 10 C 1.40772 * 120.21105 * 335.26651 * 9 7 2 11 11 C 1.37627 * 119.85159 * 179.97438 * 10 9 7 12 12 C 1.38565 * 120.30749 * 359.72170 * 11 10 9 13 13 C 1.39117 * 120.43924 * 0.55567 * 12 11 10 14 14 O 1.35902 * 119.93026 * 179.72049 * 13 12 11 15 15 S 1.52198 * 114.00295 * 269.72602 * 14 13 12 16 16 O 1.42106 * 104.27772 * 318.92901 * 15 14 13 17 17 O 1.42101 * 104.27925 * 191.07080 * 15 14 13 18 18 C 1.81405 * 104.44817 * 74.99885 * 15 14 13 19 19 C 1.53007 * 109.46892 * 180.02562 * 18 15 14 20 20 C 1.52995 * 109.47091 * 179.97438 * 19 18 15 21 21 H 1.09010 * 109.48656 * 54.97283 * 20 19 18 22 22 C 1.53093 * 109.48273 * 175.00165 * 20 19 18 23 23 C 1.53173 * 109.16385 * 177.59472 * 22 20 19 24 24 C 1.53181 * 109.11007 * 302.97668 * 23 22 20 25 25 C 1.53277 * 109.06561 * 56.94059 * 24 23 22 26 26 O 1.42899 * 109.46151 * 302.44739 * 25 24 23 27 27 C 1.38139 * 120.13819 * 359.44471 * 13 12 11 28 28 H 0.96999 * 119.99982 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.07193 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.84655 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.77894 * 180.26943 * 12 11 10 32 32 H 1.08990 * 109.47027 * 60.00627 * 18 15 14 33 33 H 1.08998 * 109.47248 * 299.99942 * 18 15 14 34 34 H 1.09000 * 109.46806 * 60.00430 * 19 18 15 35 35 H 1.08994 * 109.47228 * 300.00420 * 19 18 15 36 36 H 1.08997 * 109.52233 * 57.68904 * 22 20 19 37 37 H 1.09002 * 109.52107 * 297.49976 * 22 20 19 38 38 H 1.09006 * 109.54551 * 62.88773 * 23 22 20 39 39 H 1.08996 * 109.54711 * 183.06389 * 23 22 20 40 40 H 1.09000 * 109.52154 * 176.93209 * 24 23 22 41 41 H 1.08993 * 109.52224 * 297.11662 * 24 23 22 42 42 H 1.08995 * 109.45683 * 182.44776 * 25 24 23 43 43 H 1.09007 * 109.46779 * 62.44635 * 25 24 23 44 44 H 1.07998 * 120.15083 * 180.25295 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4925 2.6222 0.7962 6 1 3.5856 1.4137 0.5992 7 6 2.0079 -1.2119 0.0005 8 1 3.0492 -1.2344 -0.2852 9 6 1.3517 -2.4071 0.3752 10 6 0.2236 -2.3621 1.2161 11 6 -0.4098 -3.5299 1.5756 12 6 0.0543 -4.7493 1.1092 13 6 1.1715 -4.8087 0.2822 14 8 1.6212 -6.0108 -0.1647 15 16 2.6519 -6.6634 0.7453 16 8 3.4897 -5.5902 1.1522 17 8 3.1651 -7.7425 -0.0238 18 6 1.6867 -7.2853 2.1497 19 6 2.6220 -7.9709 3.1477 20 6 1.8081 -8.4948 4.3325 21 1 1.0108 -9.1427 3.9679 22 6 2.7227 -9.2884 5.2693 23 6 1.9141 -9.7582 6.4824 24 6 1.2931 -8.5403 7.1734 25 6 0.4337 -7.7746 6.1613 26 8 1.2394 -7.3937 5.0442 27 6 1.8212 -3.6479 -0.0902 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1440 -1.4134 1.5782 30 1 -1.2750 -3.4954 2.2211 31 1 -0.4518 -5.6601 1.3932 32 1 0.9469 -8.0019 1.7932 33 1 1.1803 -6.4534 2.6393 34 1 3.3616 -7.2539 3.5042 35 1 3.1288 -8.8026 2.6584 36 1 3.5429 -8.6526 5.6023 37 1 3.1227 -10.1538 4.7408 38 1 1.1239 -10.4338 6.1546 39 1 2.5714 -10.2774 7.1799 40 1 0.6717 -8.8712 8.0056 41 1 2.0845 -7.8894 7.5449 42 1 0.0235 -6.8826 6.6346 43 1 -0.3817 -8.4129 5.8205 44 1 2.6860 -3.6935 -0.7354 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882126934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = -153.500022 kcal Electronic energy + Delta-G solvation = -27812.384567 eV Core-core repulsion = 23821.559979 eV Total energy + Delta-G solvation = -3990.824588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.99393 -39.64883 -36.91618 -36.68197 -35.62770 -34.43734 -33.83781 -33.64510 -30.38236 -30.02794 -28.85731 -25.92579 -25.44415 -24.01797 -22.48227 -21.81185 -21.04552 -20.53853 -19.62856 -18.10665 -17.35548 -16.75893 -16.72082 -16.15864 -16.07178 -15.42320 -15.03338 -14.86819 -14.79925 -14.61313 -14.26981 -14.01515 -13.74036 -13.17972 -12.97083 -12.65409 -12.55967 -12.41151 -12.31297 -12.25907 -11.76281 -11.75675 -11.62270 -11.55847 -11.45884 -11.24297 -11.20815 -11.13838 -11.09514 -10.75268 -10.63470 -10.56317 -10.24818 -10.13184 -9.63640 -9.57962 -9.30344 -7.76552 -7.60926 -6.94819 -4.55610 0.58106 2.38752 2.63003 2.87624 3.01785 3.03594 3.11961 3.57847 3.83695 3.99225 4.38237 4.39298 4.48385 4.49077 4.56787 4.62171 4.85689 4.90495 5.01744 5.03785 5.19844 5.32304 5.39256 5.44181 5.47037 5.56562 5.64382 5.69244 5.77352 5.82531 5.89134 5.96337 6.02956 6.07248 6.16236 6.69156 6.75729 6.85638 7.02614 7.09554 7.30810 7.43940 7.69464 7.81999 8.00105 8.39773 8.65916 8.69274 10.00421 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.014256 B = 0.003090 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.622609 B = 9058.643229 C =10088.945287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.450 4.450 8 H 0.086 0.914 9 C 0.118 3.882 10 C -0.150 4.150 11 C -0.088 4.088 12 C -0.254 4.254 13 C 0.078 3.922 14 O -0.665 6.665 15 S 2.595 3.405 16 O -0.945 6.945 17 O -0.953 6.953 18 C -0.652 4.652 19 C -0.101 4.101 20 C 0.099 3.901 21 H 0.062 0.938 22 C -0.155 4.155 23 C -0.122 4.122 24 C -0.158 4.158 25 C 0.060 3.940 26 O -0.371 6.371 27 C -0.187 4.187 28 H 0.284 0.716 29 H 0.127 0.873 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.048 0.952 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 -13.454 11.696 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.479 4.479 8 H 0.104 0.896 9 C 0.115 3.885 10 C -0.170 4.170 11 C -0.107 4.107 12 C -0.275 4.275 13 C 0.037 3.963 14 O -0.626 6.626 15 S 2.691 3.309 16 O -0.943 6.943 17 O -0.952 6.952 18 C -0.778 4.778 19 C -0.140 4.140 20 C 0.040 3.960 21 H 0.080 0.920 22 C -0.193 4.193 23 C -0.160 4.160 24 C -0.196 4.196 25 C -0.017 4.017 26 O -0.290 6.290 27 C -0.209 4.209 28 H 0.095 0.905 29 H 0.145 0.855 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.147 0.853 33 H 0.168 0.832 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.067 0.933 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.088 -13.088 11.011 17.105 hybrid contribution -0.321 0.042 0.489 0.587 sum -0.234 -13.047 11.501 17.394 Atomic orbital electron populations 1.69798 1.07704 1.29772 1.33829 1.25973 0.94810 1.01682 0.91941 0.86207 0.80860 0.80005 0.79247 1.19385 1.19868 1.18093 1.19662 0.98434 0.90808 1.38996 0.89641 1.17446 0.91129 0.91203 0.88743 1.21520 0.98615 0.97307 0.99578 1.20509 0.98815 0.92037 0.99307 1.20392 1.00527 0.98271 1.08347 1.17956 0.98170 0.78763 1.01402 1.85576 1.71310 1.41348 1.64331 1.05460 0.75172 0.74749 0.75519 1.93660 1.65929 1.51345 1.83385 1.93562 1.77146 1.57141 1.67313 1.30850 1.14567 1.13172 1.19173 1.21309 0.97207 1.01256 0.94204 1.21999 0.94795 0.88182 0.91015 0.92026 1.22264 0.99302 1.00710 0.96996 1.21579 0.99640 0.97480 0.97253 1.22242 1.00681 0.97842 0.98788 1.22600 0.92385 0.99918 0.86808 1.88013 1.66808 1.31309 1.42842 1.21127 1.03226 0.91174 1.05355 0.90459 0.85528 0.87857 0.87840 0.85274 0.83173 0.89209 0.89181 0.90584 0.90608 0.91887 0.91461 0.90991 0.90905 0.88688 0.93330 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.18 10.97 55.55 0.61 -18.58 16 2 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 3 Si 0.91 17.91 29.60 -169.99 -5.03 12.88 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.45 -11.61 9.05 -37.74 -0.34 -11.96 16 8 H 0.09 2.14 7.91 -52.49 -0.41 1.72 16 9 C 0.12 3.07 5.57 -106.85 -0.60 2.48 16 10 C -0.15 -3.67 8.69 -38.85 -0.34 -4.01 16 11 C -0.09 -1.91 10.02 -39.68 -0.40 -2.30 16 12 C -0.25 -5.35 8.47 -39.13 -0.33 -5.68 16 13 C 0.08 1.78 4.79 -39.29 -0.19 1.59 16 14 O -0.67 -13.84 10.04 -51.76 -0.52 -14.36 16 15 S 2.60 47.63 5.17 -107.50 -0.56 47.07 16 16 O -0.94 -20.32 16.26 -67.04 -1.09 -21.41 16 17 O -0.95 -18.77 18.09 -67.04 -1.21 -19.99 16 18 C -0.65 -9.12 5.36 37.16 0.20 -8.92 16 19 C -0.10 -1.22 4.93 -26.73 -0.13 -1.36 16 20 C 0.10 1.07 2.64 -26.69 -0.07 1.00 16 21 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 22 C -0.15 -1.35 5.42 -26.59 -0.14 -1.49 16 23 C -0.12 -0.91 6.02 -26.55 -0.16 -1.07 16 24 C -0.16 -1.24 6.15 -26.49 -0.16 -1.40 16 25 C 0.06 0.57 6.85 37.30 0.26 0.82 16 26 O -0.37 -4.68 9.94 -35.23 -0.35 -5.03 16 27 C -0.19 -4.71 8.78 -38.73 -0.34 -5.05 16 28 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 29 H 0.13 3.13 6.17 -52.49 -0.32 2.80 16 30 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 31 H 0.10 1.83 7.51 -52.49 -0.39 1.43 16 32 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.15 2.24 6.30 -51.93 -0.33 1.91 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 44 H 0.11 2.71 8.06 -52.49 -0.42 2.29 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -30.84 369.27 -11.93 -42.78 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.51 Total: 6.71 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: -2.84 Total: -35.65 kcal Atomic # 7 Polarization: -19.18 SS G_CDS: 0.61 Total: -18.58 kcal Atomic # 8 Polarization: -57.61 SS G_CDS: -3.17 Total: -60.78 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: 47.63 SS G_CDS: -0.56 Total: 47.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.84 -11.93 -42.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882126934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.725 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds