Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86802 * 120.00050 * 2 1 4 4 H 1.48495 * 109.46838 * 274.66252 * 3 2 1 5 5 H 1.48494 * 109.46898 * 34.65973 * 3 2 1 6 6 H 1.48498 * 109.46910 * 154.66060 * 3 2 1 7 7 C 1.39932 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99708 * 162.21274 * 7 2 1 9 9 C 1.41403 * 120.00649 * 342.21014 * 7 2 1 10 10 C 1.40772 * 120.21105 * 335.26651 * 9 7 2 11 11 C 1.37627 * 119.85159 * 179.97438 * 10 9 7 12 12 C 1.38565 * 120.30749 * 359.72170 * 11 10 9 13 13 C 1.39117 * 120.43924 * 0.55567 * 12 11 10 14 14 O 1.35902 * 119.93026 * 179.72049 * 13 12 11 15 15 S 1.52198 * 114.00295 * 269.72602 * 14 13 12 16 16 O 1.42106 * 104.27772 * 318.92901 * 15 14 13 17 17 O 1.42101 * 104.27925 * 191.07080 * 15 14 13 18 18 C 1.81405 * 104.44817 * 74.99885 * 15 14 13 19 19 C 1.53007 * 109.46892 * 180.02562 * 18 15 14 20 20 C 1.52995 * 109.47091 * 179.97438 * 19 18 15 21 21 H 1.09010 * 109.48656 * 54.97283 * 20 19 18 22 22 C 1.53093 * 109.48273 * 175.00165 * 20 19 18 23 23 C 1.53173 * 109.16385 * 177.59472 * 22 20 19 24 24 C 1.53181 * 109.11007 * 302.97668 * 23 22 20 25 25 C 1.53277 * 109.06561 * 56.94059 * 24 23 22 26 26 O 1.42899 * 109.46151 * 302.44739 * 25 24 23 27 27 C 1.38139 * 120.13819 * 359.44471 * 13 12 11 28 28 H 0.96999 * 119.99982 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.07193 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.84655 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.77894 * 180.26943 * 12 11 10 32 32 H 1.08990 * 109.47027 * 60.00627 * 18 15 14 33 33 H 1.08998 * 109.47248 * 299.99942 * 18 15 14 34 34 H 1.09000 * 109.46806 * 60.00430 * 19 18 15 35 35 H 1.08994 * 109.47228 * 300.00420 * 19 18 15 36 36 H 1.08997 * 109.52233 * 57.68904 * 22 20 19 37 37 H 1.09002 * 109.52107 * 297.49976 * 22 20 19 38 38 H 1.09006 * 109.54551 * 62.88773 * 23 22 20 39 39 H 1.08996 * 109.54711 * 183.06389 * 23 22 20 40 40 H 1.09000 * 109.52154 * 176.93209 * 24 23 22 41 41 H 1.08993 * 109.52224 * 297.11662 * 24 23 22 42 42 H 1.08995 * 109.45683 * 182.44776 * 25 24 23 43 43 H 1.09007 * 109.46779 * 62.44635 * 25 24 23 44 44 H 1.07998 * 120.15083 * 180.25295 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4925 2.6222 0.7962 6 1 3.5856 1.4137 0.5992 7 6 2.0079 -1.2119 0.0005 8 1 3.0492 -1.2344 -0.2852 9 6 1.3517 -2.4071 0.3752 10 6 0.2236 -2.3621 1.2161 11 6 -0.4098 -3.5299 1.5756 12 6 0.0543 -4.7493 1.1092 13 6 1.1715 -4.8087 0.2822 14 8 1.6212 -6.0108 -0.1647 15 16 2.6519 -6.6634 0.7453 16 8 3.4897 -5.5902 1.1522 17 8 3.1651 -7.7425 -0.0238 18 6 1.6867 -7.2853 2.1497 19 6 2.6220 -7.9709 3.1477 20 6 1.8081 -8.4948 4.3325 21 1 1.0108 -9.1427 3.9679 22 6 2.7227 -9.2884 5.2693 23 6 1.9141 -9.7582 6.4824 24 6 1.2931 -8.5403 7.1734 25 6 0.4337 -7.7746 6.1613 26 8 1.2394 -7.3937 5.0442 27 6 1.8212 -3.6479 -0.0902 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1440 -1.4134 1.5782 30 1 -1.2750 -3.4954 2.2211 31 1 -0.4518 -5.6601 1.3932 32 1 0.9469 -8.0019 1.7932 33 1 1.1803 -6.4534 2.6393 34 1 3.3616 -7.2539 3.5042 35 1 3.1288 -8.8026 2.6584 36 1 3.5429 -8.6526 5.6023 37 1 3.1227 -10.1538 4.7408 38 1 1.1239 -10.4338 6.1546 39 1 2.5714 -10.2774 7.1799 40 1 0.6717 -8.8712 8.0056 41 1 2.0845 -7.8894 7.5449 42 1 0.0235 -6.8826 6.6346 43 1 -0.3817 -8.4129 5.8205 44 1 2.6860 -3.6935 -0.7354 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882126934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = -172.238999 kcal Electronic energy + Delta-G solvation = -27813.197150 eV Core-core repulsion = 23821.559979 eV Total energy + Delta-G solvation = -3991.637171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.67680 -40.39494 -38.68380 -38.26919 -37.20195 -35.53198 -35.28955 -34.52593 -32.00693 -31.07283 -30.65745 -27.45398 -26.62333 -24.77395 -24.10284 -23.06579 -22.57880 -21.31883 -21.14157 -19.73819 -18.91350 -18.20481 -17.98695 -17.49495 -17.13622 -16.93701 -16.65587 -16.10903 -16.00402 -15.65924 -15.37952 -14.96330 -14.87220 -14.69346 -14.27423 -14.07667 -13.99079 -13.68368 -13.51805 -13.43558 -13.33541 -13.24028 -13.16367 -12.93167 -12.82184 -12.57498 -12.49588 -12.22858 -12.13438 -12.00506 -11.95451 -11.88290 -11.46395 -11.39445 -11.11291 -11.08754 -10.32744 -9.60442 -9.43475 -8.74665 -6.47870 -0.89217 0.65066 0.82997 1.24243 1.39341 1.46944 1.55582 2.19732 2.57520 2.60604 2.83036 3.06263 3.40386 3.49230 3.77538 3.81084 3.96504 4.00588 4.12893 4.17303 4.26451 4.27199 4.38117 4.42237 4.49841 4.56275 4.74457 4.76668 4.84805 4.87622 4.90959 4.91771 4.98190 5.04234 5.09429 5.16152 5.19720 5.22657 5.41713 5.49661 5.61907 5.86594 5.93688 6.17521 6.35748 6.51440 6.77982 6.81840 8.23550 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.014256 B = 0.003090 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.622609 B = 9058.643229 C =10088.945287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.041 3.959 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.262 1.262 7 C -0.494 4.494 8 H 0.074 0.926 9 C 0.091 3.909 10 C -0.170 4.170 11 C -0.083 4.083 12 C -0.240 4.240 13 C 0.079 3.921 14 O -0.676 6.676 15 S 2.590 3.410 16 O -0.986 6.986 17 O -0.971 6.971 18 C -0.620 4.620 19 C -0.113 4.113 20 C 0.097 3.903 21 H 0.079 0.921 22 C -0.156 4.156 23 C -0.121 4.121 24 C -0.156 4.156 25 C 0.052 3.948 26 O -0.402 6.402 27 C -0.227 4.227 28 H 0.295 0.705 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.166 0.834 33 H 0.148 0.852 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.871 -15.195 13.589 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.176 4.176 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.181 1.181 6 H -0.186 1.186 7 C -0.522 4.522 8 H 0.092 0.908 9 C 0.089 3.911 10 C -0.190 4.190 11 C -0.101 4.101 12 C -0.261 4.261 13 C 0.038 3.962 14 O -0.636 6.636 15 S 2.691 3.309 16 O -0.985 6.985 17 O -0.969 6.969 18 C -0.751 4.751 19 C -0.151 4.151 20 C 0.038 3.962 21 H 0.097 0.903 22 C -0.193 4.193 23 C -0.158 4.158 24 C -0.194 4.194 25 C -0.024 4.024 26 O -0.322 6.322 27 C -0.249 4.249 28 H 0.106 0.894 29 H 0.137 0.863 30 H 0.161 0.839 31 H 0.166 0.834 32 H 0.184 0.816 33 H 0.166 0.834 34 H 0.098 0.902 35 H 0.131 0.869 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.535 -14.815 12.855 19.675 hybrid contribution 0.137 0.373 -0.030 0.398 sum -1.398 -14.442 12.825 19.365 Atomic orbital electron populations 1.69806 1.08777 1.31254 1.33781 1.26733 0.95616 1.04359 0.90912 0.85163 0.79185 0.75703 0.79552 1.18703 1.18148 1.18623 1.19858 0.98419 0.92369 1.41554 0.90780 1.17773 0.92206 0.91622 0.89539 1.21572 0.98869 0.98330 1.00217 1.20943 0.99255 0.91121 0.98821 1.20871 0.99138 0.99900 1.06241 1.18047 0.98348 0.78768 1.01028 1.85500 1.71530 1.40494 1.66037 1.05415 0.75094 0.73982 0.76391 1.93620 1.67622 1.53171 1.84041 1.93532 1.77739 1.56794 1.68836 1.30568 1.14409 1.13944 1.16158 1.21545 0.97109 1.01833 0.94630 1.22088 0.95391 0.88046 0.90655 0.90347 1.22278 0.98852 1.00860 0.97355 1.21599 0.99965 0.97402 0.96858 1.22228 1.00447 0.97724 0.98964 1.22786 0.92664 1.00526 0.86462 1.87965 1.67501 1.32724 1.43963 1.21182 1.04040 0.92530 1.07098 0.89401 0.86269 0.83881 0.83367 0.81566 0.83379 0.90201 0.86882 0.91588 0.88966 0.90824 0.90367 0.89236 0.92014 0.88606 0.92102 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.26 10.97 21.82 0.24 -40.02 16 2 C 0.04 2.00 5.14 85.25 0.44 2.44 16 3 Si 0.98 37.37 29.60 68.60 2.03 39.40 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.49 -26.93 9.05 23.46 0.21 -26.72 16 8 H 0.07 4.01 7.91 -2.91 -0.02 3.99 16 9 C 0.09 4.99 5.57 -21.30 -0.12 4.88 16 10 C -0.17 -8.45 8.69 22.75 0.20 -8.25 16 11 C -0.08 -3.46 10.02 22.20 0.22 -3.24 16 12 C -0.24 -9.62 8.47 22.56 0.19 -9.43 16 13 C 0.08 3.62 4.79 22.46 0.11 3.73 16 14 O -0.68 -28.10 10.04 -61.54 -0.62 -28.72 16 15 S 2.59 94.53 5.17 -56.49 -0.29 94.24 16 16 O -0.99 -44.07 16.26 -118.57 -1.93 -45.99 16 17 O -0.97 -37.92 18.09 -118.57 -2.15 -40.07 16 18 C -0.62 -15.61 5.36 71.98 0.39 -15.22 16 19 C -0.11 -2.44 4.93 30.60 0.15 -2.29 16 20 C 0.10 1.79 2.64 30.62 0.08 1.88 16 21 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 22 C -0.16 -2.27 5.42 30.68 0.17 -2.11 16 23 C -0.12 -1.42 6.02 30.71 0.18 -1.24 16 24 C -0.16 -2.05 6.15 30.75 0.19 -1.86 16 25 C 0.05 0.85 6.85 72.07 0.49 1.34 16 26 O -0.40 -9.19 9.94 -148.98 -1.48 -10.67 16 27 C -0.23 -12.07 8.78 22.82 0.20 -11.87 16 28 H 0.29 12.99 8.30 -92.71 -0.77 12.22 16 29 H 0.12 6.01 6.17 -2.91 -0.02 6.00 16 30 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 31 H 0.15 4.55 7.51 -2.91 -0.02 4.53 16 32 H 0.17 3.01 8.14 -2.40 -0.02 2.99 16 33 H 0.15 3.97 6.30 -2.39 -0.02 3.96 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.09 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -70.35 369.27 -0.10 -70.45 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.99 Total: 29.33 kcal Atomic # 6 Polarization: -71.06 SS G_CDS: 3.10 Total: -67.95 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.24 Total: -40.02 kcal Atomic # 8 Polarization: -119.27 SS G_CDS: -6.17 Total: -125.45 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Atomic # 16 Polarization: 94.53 SS G_CDS: -0.29 Total: 94.24 kcal Total: -70.35 -0.10 -70.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882126934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.788 kcal (2) G-P(sol) polarization free energy of solvation -70.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds