Wall clock time and date at job start Sat Apr 11 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86805 * 119.99745 * 2 1 4 4 H 1.48502 * 109.46874 * 94.69811 * 3 2 1 5 5 H 1.48498 * 109.47069 * 214.70120 * 3 2 1 6 6 H 1.48501 * 109.47075 * 334.70053 * 3 2 1 7 7 C 1.40041 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99893 * 8.99049 * 7 2 1 9 9 C 1.46372 * 120.00304 * 188.99135 * 7 2 1 10 10 O 1.21691 * 119.99979 * 13.24807 * 9 7 2 11 11 N 1.34784 * 120.00278 * 193.24972 * 9 7 2 12 12 C 1.47074 * 120.87647 * 354.88733 * 11 9 7 13 13 C 1.53696 * 108.27743 * 128.75931 * 12 11 9 14 14 N 1.46894 * 109.25751 * 54.07725 * 13 12 11 15 15 C 1.46902 * 111.00097 * 172.61102 * 14 13 12 16 16 C 1.52994 * 109.47050 * 294.30174 * 15 14 13 17 17 C 1.50707 * 109.47146 * 180.02562 * 16 15 14 18 18 C 1.38238 * 119.98037 * 100.00422 * 17 16 15 19 19 C 1.38188 * 120.03912 * 179.97438 * 18 17 16 20 20 C 1.38490 * 119.99493 * 359.97438 * 19 18 17 21 21 F 1.35106 * 120.01674 * 180.02562 * 20 19 18 22 22 C 1.38413 * 119.96703 * 0.02562 * 20 19 18 23 23 C 1.38336 * 119.95961 * 359.72256 * 22 20 19 24 24 Cl 1.73603 * 120.00319 * 180.29798 * 23 22 20 25 25 C 1.46900 * 111.27189 * 296.76250 * 14 13 12 26 26 C 1.47074 * 120.88239 * 175.17093 * 11 9 7 27 27 H 0.96994 * 120.00332 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.62963 * 248.52125 * 12 11 9 29 29 H 1.08996 * 109.63328 * 9.10465 * 12 11 9 30 30 H 1.09004 * 109.64383 * 294.07729 * 13 12 11 31 31 H 1.08997 * 109.42641 * 173.94592 * 13 12 11 32 32 H 1.08996 * 109.47109 * 54.30584 * 15 14 13 33 33 H 1.08999 * 109.46939 * 174.30697 * 15 14 13 34 34 H 1.09000 * 109.47771 * 299.99763 * 16 15 14 35 35 H 1.08995 * 109.47393 * 59.99998 * 16 15 14 36 36 H 1.08002 * 119.98398 * 359.97129 * 18 17 16 37 37 H 1.07999 * 120.00400 * 180.02562 * 19 18 17 38 38 H 1.08000 * 120.02053 * 180.02562 * 22 20 19 39 39 H 1.08998 * 109.48928 * 303.14251 * 25 14 13 40 40 H 1.08999 * 109.49288 * 183.06450 * 25 14 13 41 41 H 1.09006 * 109.62945 * 350.89063 * 26 11 9 42 42 H 1.09003 * 109.63203 * 111.47595 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5874 1.9891 1.3954 5 1 3.4850 1.4710 -0.7970 6 1 1.3919 2.6794 -0.5983 7 6 2.0070 -1.2127 0.0005 8 1 1.4770 -2.1425 -0.1452 9 6 3.4572 -1.2204 0.1986 10 8 4.0219 -0.2196 0.5993 11 7 4.1673 -2.3358 -0.0627 12 6 3.4942 -3.5879 -0.4401 13 6 4.1472 -4.1173 -1.7268 14 7 5.5977 -4.2293 -1.5233 15 6 6.2396 -4.8949 -2.6648 16 6 5.7623 -6.3463 -2.7432 17 6 6.4213 -7.0293 -3.9139 18 6 7.5150 -7.8495 -3.7090 19 6 8.1199 -8.4767 -4.7815 20 6 7.6300 -8.2842 -6.0625 21 9 8.2207 -8.8977 -7.1113 22 6 6.5348 -7.4630 -6.2677 23 6 5.9274 -6.8400 -5.1922 24 17 4.5490 -5.8160 -5.4474 25 6 6.2036 -2.9150 -1.2714 26 6 5.6352 -2.3348 0.0281 27 1 -0.4850 0.8400 -0.0004 28 1 3.6076 -4.3200 0.3595 29 1 2.4360 -3.3958 -0.6172 30 1 3.9473 -3.4298 -2.5488 31 1 3.7364 -5.0984 -1.9646 32 1 5.9738 -4.3747 -3.5851 33 1 7.3217 -4.8748 -2.5356 34 1 6.0281 -6.8665 -1.8230 35 1 4.6802 -6.3665 -2.8724 36 1 7.8971 -8.0001 -2.7101 37 1 8.9741 -9.1177 -4.6207 38 1 6.1518 -7.3126 -7.2662 39 1 5.9750 -2.2444 -2.0997 40 1 7.2841 -3.0244 -1.1789 41 1 5.9932 -1.3138 0.1606 42 1 5.9504 -2.9488 0.8718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895066127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:22 Heat of formation + Delta-G solvation = -62.587657 kcal Electronic energy + Delta-G solvation = -26669.285722 eV Core-core repulsion = 22589.192129 eV Total energy + Delta-G solvation = -4080.093593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.34993 -39.93594 -39.00388 -37.12370 -36.80078 -34.48087 -32.84884 -32.56983 -31.41550 -30.77372 -28.76438 -27.00981 -25.56154 -23.60697 -23.30742 -22.96836 -21.35355 -20.67642 -18.86734 -18.24960 -17.17649 -16.84897 -16.36393 -16.06434 -15.93606 -15.26218 -15.02887 -14.91569 -14.66282 -14.43036 -14.37535 -14.15859 -13.98802 -13.74255 -13.52181 -13.11158 -12.55406 -12.30858 -12.19118 -12.04667 -11.91987 -11.82730 -11.66950 -11.52172 -11.22761 -11.12764 -11.04664 -10.74830 -10.71256 -10.49675 -10.34349 -9.44535 -9.43131 -9.03214 -8.97412 -8.27517 -7.89723 -7.49102 -6.62841 -4.84220 0.52406 0.61253 1.69131 2.94797 3.44542 3.48786 3.72309 3.75922 3.87756 4.17710 4.21298 4.27771 4.41353 4.47870 4.57482 4.68518 4.91109 5.01025 5.07300 5.24979 5.36542 5.42587 5.44188 5.46088 5.53813 5.57441 5.64207 5.66705 5.74170 5.82303 5.88175 5.97748 6.03526 6.17092 6.26508 6.33561 6.40212 6.57136 7.02891 7.15981 7.21895 7.62903 7.87828 8.30996 8.71889 9.14291 10.03712 10.37939 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022823 B = 0.002422 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.528101 B =11556.825808 C =12141.358744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.102 3.898 3 Si 0.967 3.033 4 H -0.278 1.278 5 H -0.265 1.265 6 H -0.323 1.323 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.554 3.446 10 O -0.618 6.618 11 N -0.634 5.634 12 C 0.126 3.874 13 C 0.039 3.961 14 N -0.535 5.535 15 C 0.061 3.939 16 C -0.083 4.083 17 C -0.077 4.077 18 C -0.074 4.074 19 C -0.147 4.147 20 C 0.104 3.896 21 F -0.135 7.135 22 C -0.146 4.146 23 C -0.009 4.009 24 Cl -0.046 7.046 25 C 0.045 3.955 26 C 0.125 3.875 27 H 0.282 0.718 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.067 -18.703 -11.356 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.116 4.116 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.191 1.191 6 H -0.254 1.254 7 C -0.569 4.569 8 H 0.108 0.892 9 C 0.364 3.636 10 O -0.510 6.510 11 N -0.369 5.369 12 C 0.001 3.999 13 C -0.089 4.089 14 N -0.260 5.260 15 C -0.067 4.067 16 C -0.120 4.120 17 C -0.078 4.078 18 C -0.092 4.092 19 C -0.166 4.166 20 C 0.084 3.916 21 F -0.114 7.114 22 C -0.165 4.165 23 C -0.036 4.036 24 Cl -0.017 7.017 25 C -0.083 4.083 26 C 0.001 3.999 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.119 -18.368 -10.791 25.557 hybrid contribution 0.154 0.922 -1.132 1.468 sum 14.273 -17.446 -11.923 25.500 Atomic orbital electron populations 1.69557 1.07936 1.29991 1.38317 1.25757 0.94719 1.02049 0.89089 0.85227 0.77719 0.77419 0.79684 1.20437 1.19078 1.25409 1.20771 0.89154 0.95765 1.51202 0.89166 1.18331 0.88300 0.80326 0.76686 1.90194 1.72555 1.33567 1.54667 1.47737 1.04581 1.11077 1.73476 1.21685 0.98188 0.85848 0.94154 1.22687 0.87374 1.00412 0.98454 1.61959 1.04053 1.21048 1.38937 1.22023 0.99002 0.93034 0.92681 1.20705 1.00878 0.95314 0.95121 1.19906 0.96299 0.98030 0.93569 1.20953 0.93999 0.94879 0.99395 1.21268 1.02026 1.02370 0.90952 1.17462 0.93925 0.95911 0.84252 1.91530 1.82807 1.80941 1.56079 1.20978 0.96543 0.98932 1.00054 1.20601 0.92406 0.96868 0.93744 1.98422 1.40735 1.65776 1.96738 1.22496 0.98446 0.88881 0.98508 1.21293 0.82488 1.01112 0.95030 0.90815 0.92749 0.88153 0.94340 0.90370 0.94454 0.90900 0.89313 0.89713 0.83738 0.84070 0.83706 0.94641 0.90630 0.89522 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.47 13.92 55.55 0.77 -22.70 16 2 C 0.10 2.90 5.52 -17.37 -0.10 2.80 16 3 Si 0.97 25.63 25.88 -169.99 -4.40 21.23 16 4 H -0.28 -7.58 7.11 56.52 0.40 -7.18 16 5 H -0.27 -7.37 6.62 56.52 0.37 -6.99 16 6 H -0.32 -8.10 7.11 56.52 0.40 -7.70 16 7 C -0.53 -14.93 9.35 -35.64 -0.33 -15.26 16 8 H 0.09 2.49 6.02 -52.48 -0.32 2.17 16 9 C 0.55 14.76 7.32 -12.99 -0.10 14.67 16 10 O -0.62 -17.94 11.82 5.20 0.06 -17.88 16 11 N -0.63 -13.69 3.00 -173.84 -0.52 -14.21 16 12 C 0.13 2.25 6.54 -3.37 -0.02 2.23 16 13 C 0.04 0.58 5.48 -3.47 -0.02 0.56 16 14 N -0.54 -7.20 4.63 -234.03 -1.08 -8.28 16 15 C 0.06 0.65 4.90 -3.83 -0.02 0.64 16 16 C -0.08 -0.75 4.73 -27.88 -0.13 -0.88 16 17 C -0.08 -0.64 5.14 -104.58 -0.54 -1.18 16 18 C -0.07 -0.50 9.66 -39.60 -0.38 -0.89 16 19 C -0.15 -1.01 10.03 -39.51 -0.40 -1.40 16 20 C 0.10 0.86 7.30 -39.42 -0.29 0.57 16 21 F -0.14 -1.21 17.27 2.25 0.04 -1.17 16 22 C -0.15 -1.23 9.81 -39.48 -0.39 -1.62 16 23 C -0.01 -0.08 6.31 -39.51 -0.25 -0.33 16 24 Cl -0.05 -0.46 26.65 -51.86 -1.38 -1.85 16 25 C 0.05 0.67 5.62 -3.70 -0.02 0.65 16 26 C 0.13 2.27 6.58 -3.60 -0.02 2.25 16 27 H 0.28 7.36 8.29 -40.82 -0.34 7.02 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 1.95 5.41 -51.93 -0.28 1.67 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.98 6.16 -51.93 -0.32 0.66 16 32 H 0.04 0.44 7.28 -51.93 -0.38 0.06 16 33 H 0.07 0.72 7.97 -51.93 -0.41 0.31 16 34 H 0.09 0.73 8.00 -51.93 -0.42 0.32 16 35 H 0.08 0.83 5.60 -51.93 -0.29 0.54 16 36 H 0.14 0.68 8.04 -52.49 -0.42 0.26 16 37 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.93 7.99 -51.93 -0.41 0.51 16 41 H 0.09 1.72 7.09 -51.93 -0.37 1.35 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 354.82 15.07 5.35 5.35 Total: -1.00 -31.96 354.82 -9.48 -41.45 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -5.32 Total: -4.76 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -3.00 Total: 2.82 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.83 Total: -45.19 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.06 Total: -17.88 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -4.40 Total: 21.23 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.38 Total: -1.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.96 -9.48 -41.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895066127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.140 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds