Wall clock time and date at job start Sat Apr 11 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31927 * 119.01849 * 2 1 4 4 C 1.32134 * 121.05502 * 180.02562 * 3 2 1 5 5 C 1.38984 * 119.12604 * 0.02562 * 4 3 2 6 6 Cl 1.73605 * 120.88648 * 180.02562 * 5 4 3 7 7 C 1.39633 * 118.22704 * 359.97438 * 5 4 3 8 8 C 1.48366 * 120.56142 * 180.02562 * 7 5 4 9 9 O 1.21483 * 120.00248 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99756 * 180.02562 * 8 7 5 11 11 C 1.46507 * 120.00091 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47444 * 179.97438 * 11 10 8 13 13 H 1.09004 * 110.77455 * 51.75699 * 12 11 10 14 14 C 1.54322 * 110.72057 * 288.52447 * 12 11 10 15 15 N 1.47019 * 107.27000 * 219.44376 * 14 12 11 16 16 C 1.36941 * 125.64983 * 178.98681 * 15 14 12 17 17 H 1.08007 * 119.99895 * 349.93777 * 16 15 14 18 18 C 1.38803 * 120.00097 * 169.94226 * 16 15 14 19 19 N 1.31626 * 120.00222 * 350.41471 * 18 16 15 20 20 Si 1.86804 * 120.00248 * 170.41635 * 18 16 15 21 21 H 1.48501 * 109.46952 * 94.13640 * 20 18 16 22 22 H 1.48489 * 109.47405 * 214.13908 * 20 18 16 23 23 H 1.48501 * 109.46750 * 334.14201 * 20 18 16 24 24 C 1.47425 * 108.70572 * 358.93568 * 15 14 12 25 25 C 1.54912 * 104.82655 * 24.13248 * 24 15 14 26 26 H 1.09008 * 111.03408 * 204.90198 * 25 24 15 27 27 O 1.42894 * 111.00705 * 81.06562 * 25 24 15 28 28 N 1.31518 * 119.01703 * 180.29801 * 2 1 3 29 29 H 1.08998 * 109.47033 * 89.99907 * 1 2 3 30 30 H 1.09003 * 109.47309 * 210.00357 * 1 2 3 31 31 H 1.09001 * 109.47186 * 330.00133 * 1 2 3 32 32 H 1.08006 * 120.43407 * 179.97438 * 4 3 2 33 33 H 0.96997 * 119.99979 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47092 * 59.99553 * 11 10 8 35 35 H 1.09005 * 109.46810 * 300.00203 * 11 10 8 36 36 H 1.08999 * 109.88100 * 338.85815 * 14 12 11 37 37 H 1.08996 * 109.88474 * 100.02484 * 14 12 11 38 38 H 0.96997 * 119.99587 * 179.97438 * 19 18 16 39 39 H 1.09001 * 110.36666 * 265.29433 * 24 15 14 40 40 H 1.08997 * 110.36623 * 142.96984 * 24 15 14 41 41 H 0.96704 * 113.99756 * 67.80213 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2006 -0.0005 5 6 4.1867 0.0113 -0.0016 6 17 5.9227 0.0197 -0.0016 7 6 3.4757 -1.1904 -0.0015 8 6 4.1911 -2.4902 -0.0021 9 8 5.4057 -2.5151 -0.0021 10 7 3.4934 -3.6434 -0.0026 11 6 4.1998 -4.9269 -0.0026 12 6 3.1820 -6.0692 -0.0025 13 1 2.4538 -5.9383 -0.8029 14 6 2.4764 -6.1718 1.3661 15 7 2.3247 -7.6016 1.6729 16 6 1.7628 -8.1188 2.8096 17 1 1.5336 -7.4699 3.6421 18 6 1.4879 -9.4768 2.8920 19 7 1.5884 -10.2348 1.8206 20 14 0.9751 -10.2288 4.5233 21 1 -0.5071 -10.2660 4.6070 22 1 1.5113 -11.6100 4.6220 23 1 1.5134 -9.4079 5.6376 24 6 2.8766 -8.3865 0.5536 25 6 3.8962 -7.4408 -0.1289 26 1 4.0409 -7.7109 -1.1751 27 8 5.1408 -7.4369 0.5731 28 7 2.1450 -1.1501 -0.0060 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 3.9812 2.1507 -0.0009 33 1 2.5237 -3.6235 -0.0022 34 1 4.8249 -4.9976 0.8876 35 1 4.8255 -4.9973 -0.8924 36 1 3.0833 -5.6905 2.1330 37 1 1.4963 -5.6977 1.3144 38 1 1.3966 -11.1839 1.8783 39 1 2.0854 -8.6591 -0.1449 40 1 3.3782 -9.2791 0.9272 41 1 5.6235 -8.2733 0.5225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958454463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:38 Heat of formation + Delta-G solvation = -3.769811 kcal Electronic energy + Delta-G solvation = -26897.285459 eV Core-core repulsion = 22839.662362 eV Total energy + Delta-G solvation = -4057.623098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71214 -39.58765 -38.27179 -37.00877 -35.03037 -34.61238 -34.33165 -33.40243 -32.14127 -29.79295 -28.78490 -27.85302 -26.42582 -25.23734 -23.85836 -22.98436 -21.10278 -20.31337 -19.75372 -18.67057 -18.01582 -17.30802 -16.57785 -16.31542 -16.11300 -15.72153 -15.37915 -15.04068 -14.84726 -14.19946 -13.95489 -13.91178 -13.82539 -13.44824 -13.11387 -12.79956 -12.72253 -12.40450 -12.16417 -11.98605 -11.80076 -11.69321 -11.53321 -11.31649 -11.14543 -10.82033 -10.66536 -10.56168 -10.42721 -10.15055 -10.05335 -9.83622 -9.57102 -9.48963 -9.16486 -8.98466 -8.63229 -6.81437 -5.78152 -3.09413 -0.04319 0.29332 1.61322 2.50448 2.77497 3.30850 3.35807 3.38076 3.44289 3.46679 3.49117 4.03473 4.21849 4.46617 4.54636 4.68350 4.92924 5.10348 5.16495 5.27925 5.28922 5.36418 5.38756 5.46503 5.59242 5.79095 5.86034 5.99166 6.07621 6.17425 6.28498 6.36745 6.44496 6.63658 6.84078 7.29761 7.32809 7.43745 7.50154 7.71206 8.02895 8.16892 8.28338 9.16047 9.78243 10.44847 11.35320 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.002677 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.867641 B =10457.557675 C =11529.932260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.319 3.681 3 N -0.494 5.494 4 C 0.167 3.833 5 C -0.111 4.111 6 Cl 0.001 6.999 7 C 0.151 3.849 8 C 0.559 3.441 9 O -0.505 6.505 10 N -0.699 5.699 11 C 0.139 3.861 12 C -0.106 4.106 13 H 0.088 0.912 14 C 0.145 3.855 15 N -0.596 5.596 16 C -0.224 4.224 17 H 0.075 0.925 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.148 3.852 25 C 0.081 3.919 26 H 0.057 0.943 27 O -0.558 6.558 28 N -0.480 5.480 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.185 0.815 33 H 0.411 0.589 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.021 0.979 38 H 0.252 0.748 39 H 0.034 0.966 40 H 0.074 0.926 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.707 20.901 -7.998 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 N -0.208 5.208 4 C -0.002 4.002 5 C -0.144 4.144 6 Cl 0.030 6.970 7 C 0.002 3.998 8 C 0.341 3.659 9 O -0.379 6.379 10 N -0.351 5.351 11 C 0.017 3.983 12 C -0.125 4.125 13 H 0.107 0.893 14 C 0.019 3.981 15 N -0.322 5.322 16 C -0.353 4.353 17 H 0.093 0.907 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.023 3.977 25 C 0.021 3.979 26 H 0.075 0.925 27 O -0.363 6.363 28 N -0.197 5.197 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.202 0.798 33 H 0.247 0.753 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.039 0.961 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.092 0.908 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.503 21.207 -7.777 22.726 hybrid contribution 0.346 -0.989 0.672 1.245 sum 2.849 20.218 -7.105 21.618 Atomic orbital electron populations 1.20672 0.84440 1.04994 1.04498 1.23427 0.98725 0.82716 0.89843 1.68332 1.08960 1.30341 1.13215 1.23431 0.89220 0.97422 0.90099 1.22890 0.90026 0.95965 1.05512 1.98447 1.04017 1.98605 1.95910 1.21749 0.89572 0.94396 0.94087 1.17608 0.86741 0.82698 0.78851 1.90891 1.12009 1.86433 1.48579 1.45989 1.11352 1.05463 1.72254 1.21363 0.94372 0.79322 1.03262 1.22500 0.96740 0.93311 0.99948 0.89341 1.21327 0.96234 0.88190 0.92389 1.44310 1.69786 0.98902 1.19250 1.19023 1.33292 0.91938 0.91009 0.90668 1.24788 1.01466 0.96692 0.97504 1.69930 1.55108 1.05381 1.26522 0.86119 0.78065 0.78588 0.83103 1.21635 1.21626 1.20598 1.22064 0.92928 0.93435 0.89294 1.23233 0.85163 0.95558 0.93977 0.92528 1.86403 1.33510 1.39398 1.77002 1.68357 1.07433 1.31020 1.12915 0.88997 0.88783 0.89103 0.79817 0.75340 0.89776 0.91237 0.95429 0.96088 0.93744 0.94836 0.90792 0.77858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.31 36.01 0.37 -0.20 16 2 C 0.32 3.18 7.64 -157.32 -1.20 1.98 16 3 N -0.49 -4.80 10.31 -10.70 -0.11 -4.91 16 4 C 0.17 1.47 11.14 -17.15 -0.19 1.28 16 5 C -0.11 -1.23 6.40 -38.78 -0.25 -1.47 16 6 Cl 0.00 0.01 26.25 -51.86 -1.36 -1.35 16 7 C 0.15 1.91 6.79 -82.61 -0.56 1.35 16 8 C 0.56 8.11 7.82 -12.09 -0.09 8.02 16 9 O -0.51 -8.40 14.14 5.38 0.08 -8.33 16 10 N -0.70 -9.71 5.46 -61.08 -0.33 -10.05 16 11 C 0.14 2.14 4.50 -4.04 -0.02 2.12 16 12 C -0.11 -1.76 2.89 -88.79 -0.26 -2.01 16 13 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 14 C 0.14 2.97 6.75 -3.07 -0.02 2.95 16 15 N -0.60 -15.01 3.39 -170.08 -0.58 -15.59 16 16 C -0.22 -6.24 10.24 -15.06 -0.15 -6.40 16 17 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 18 C -0.01 -0.23 5.40 -17.43 -0.09 -0.33 16 19 N -0.92 -26.52 10.68 55.49 0.59 -25.93 16 20 Si 0.91 21.99 29.56 -169.99 -5.03 16.96 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.15 3.41 5.16 -2.53 -0.01 3.40 16 25 C 0.08 1.44 4.16 -24.58 -0.10 1.34 16 26 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 27 O -0.56 -9.84 12.33 -35.23 -0.43 -10.27 16 28 N -0.48 -5.57 9.59 -7.31 -0.07 -5.64 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.18 0.97 8.06 -52.48 -0.42 0.54 16 33 H 0.41 5.24 7.85 -40.82 -0.32 4.92 16 34 H 0.08 1.49 7.52 -51.93 -0.39 1.10 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.03 0.60 7.68 -51.93 -0.40 0.20 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 40 H 0.07 1.89 6.93 -51.93 -0.36 1.53 16 41 H 0.37 5.28 9.12 45.56 0.42 5.70 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -33.28 360.65 -8.80 -42.08 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.40 Total: 5.58 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: -2.58 Total: 12.01 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.50 Total: -62.11 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.36 Total: -18.60 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.36 Total: -1.35 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.28 -8.80 -42.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958454463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.306 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds