Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31927 * 119.01849 * 2 1 4 4 C 1.32134 * 121.05502 * 180.02562 * 3 2 1 5 5 C 1.38984 * 119.12604 * 0.02562 * 4 3 2 6 6 Cl 1.73605 * 120.88648 * 180.02562 * 5 4 3 7 7 C 1.39633 * 118.22704 * 359.97438 * 5 4 3 8 8 C 1.48366 * 120.56142 * 180.02562 * 7 5 4 9 9 O 1.21483 * 120.00248 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99756 * 180.02562 * 8 7 5 11 11 C 1.46507 * 120.00091 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47444 * 179.97438 * 11 10 8 13 13 H 1.09004 * 110.77455 * 51.75699 * 12 11 10 14 14 C 1.54322 * 110.72057 * 288.52447 * 12 11 10 15 15 N 1.47019 * 107.27000 * 219.44376 * 14 12 11 16 16 C 1.36941 * 125.64983 * 178.98681 * 15 14 12 17 17 H 1.08007 * 119.99895 * 349.93777 * 16 15 14 18 18 C 1.38803 * 120.00097 * 169.94226 * 16 15 14 19 19 N 1.31626 * 120.00222 * 350.41471 * 18 16 15 20 20 Si 1.86804 * 120.00248 * 170.41635 * 18 16 15 21 21 H 1.48501 * 109.46952 * 94.13640 * 20 18 16 22 22 H 1.48489 * 109.47405 * 214.13908 * 20 18 16 23 23 H 1.48501 * 109.46750 * 334.14201 * 20 18 16 24 24 C 1.47425 * 108.70572 * 358.93568 * 15 14 12 25 25 C 1.54912 * 104.82655 * 24.13248 * 24 15 14 26 26 H 1.09008 * 111.03408 * 204.90198 * 25 24 15 27 27 O 1.42894 * 111.00705 * 81.06562 * 25 24 15 28 28 N 1.31518 * 119.01703 * 180.29801 * 2 1 3 29 29 H 1.08998 * 109.47033 * 89.99907 * 1 2 3 30 30 H 1.09003 * 109.47309 * 210.00357 * 1 2 3 31 31 H 1.09001 * 109.47186 * 330.00133 * 1 2 3 32 32 H 1.08006 * 120.43407 * 179.97438 * 4 3 2 33 33 H 0.96997 * 119.99979 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47092 * 59.99553 * 11 10 8 35 35 H 1.09005 * 109.46810 * 300.00203 * 11 10 8 36 36 H 1.08999 * 109.88100 * 338.85815 * 14 12 11 37 37 H 1.08996 * 109.88474 * 100.02484 * 14 12 11 38 38 H 0.96997 * 119.99587 * 179.97438 * 19 18 16 39 39 H 1.09001 * 110.36666 * 265.29433 * 24 15 14 40 40 H 1.08997 * 110.36623 * 142.96984 * 24 15 14 41 41 H 0.96704 * 113.99756 * 67.80213 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2006 -0.0005 5 6 4.1867 0.0113 -0.0016 6 17 5.9227 0.0197 -0.0016 7 6 3.4757 -1.1904 -0.0015 8 6 4.1911 -2.4902 -0.0021 9 8 5.4057 -2.5151 -0.0021 10 7 3.4934 -3.6434 -0.0026 11 6 4.1998 -4.9269 -0.0026 12 6 3.1820 -6.0692 -0.0025 13 1 2.4538 -5.9383 -0.8029 14 6 2.4764 -6.1718 1.3661 15 7 2.3247 -7.6016 1.6729 16 6 1.7628 -8.1188 2.8096 17 1 1.5336 -7.4699 3.6421 18 6 1.4879 -9.4768 2.8920 19 7 1.5884 -10.2348 1.8206 20 14 0.9751 -10.2288 4.5233 21 1 -0.5071 -10.2660 4.6070 22 1 1.5113 -11.6100 4.6220 23 1 1.5134 -9.4079 5.6376 24 6 2.8766 -8.3865 0.5536 25 6 3.8962 -7.4408 -0.1289 26 1 4.0409 -7.7109 -1.1751 27 8 5.1408 -7.4369 0.5731 28 7 2.1450 -1.1501 -0.0060 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 3.9812 2.1507 -0.0009 33 1 2.5237 -3.6235 -0.0022 34 1 4.8249 -4.9976 0.8876 35 1 4.8255 -4.9973 -0.8924 36 1 3.0833 -5.6905 2.1330 37 1 1.4963 -5.6977 1.3144 38 1 1.3966 -11.1839 1.8783 39 1 2.0854 -8.6591 -0.1449 40 1 3.3782 -9.2791 0.9272 41 1 5.6235 -8.2733 0.5225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958454463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -29.357670 kcal Electronic energy + Delta-G solvation = -26898.395032 eV Core-core repulsion = 22839.662362 eV Total energy + Delta-G solvation = -4058.732671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.52821 -40.75911 -39.75633 -37.85138 -36.35228 -36.17915 -35.23759 -34.14310 -33.91477 -31.45575 -29.51353 -29.42779 -27.70881 -26.71480 -25.15167 -24.00522 -22.44514 -21.80000 -21.17645 -19.64336 -19.07308 -18.93571 -18.00605 -17.30319 -17.03129 -16.92252 -16.80270 -16.24215 -16.15345 -15.73448 -15.62727 -15.05928 -14.61724 -14.58302 -14.45821 -14.04707 -13.92224 -13.64065 -13.29060 -13.25157 -12.96476 -12.88164 -12.66581 -12.63706 -12.55455 -12.36970 -12.16156 -12.07375 -11.91949 -11.85270 -11.65988 -11.41538 -10.73667 -10.71280 -10.40904 -10.39786 -10.13500 -8.83339 -7.89365 -5.22239 -0.91791 -0.45000 0.78863 1.45213 1.46493 1.51216 1.56080 1.73888 2.44249 2.48512 2.56137 2.79446 3.16617 3.25654 3.35931 3.38778 3.59083 3.79606 3.88696 3.93300 3.97963 4.25119 4.42263 4.57392 4.63242 4.71948 4.73498 4.78999 4.83070 4.90394 4.99525 5.20859 5.24152 5.33191 5.41279 5.43470 5.48170 5.66166 6.19123 6.29027 6.66029 6.92151 6.97030 7.09220 7.75745 8.41184 9.22163 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.002677 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.867641 B =10457.557675 C =11529.932260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.314 3.686 3 N -0.496 5.496 4 C 0.181 3.819 5 C -0.118 4.118 6 Cl -0.005 7.005 7 C 0.133 3.867 8 C 0.558 3.442 9 O -0.531 6.531 10 N -0.695 5.695 11 C 0.155 3.845 12 C -0.091 4.091 13 H 0.114 0.886 14 C 0.143 3.857 15 N -0.619 5.619 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.060 4.060 19 N -0.945 5.945 20 Si 0.974 3.026 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.274 1.274 24 C 0.151 3.849 25 C 0.095 3.905 26 H 0.094 0.906 27 O -0.568 6.568 28 N -0.492 5.492 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.221 0.779 33 H 0.417 0.583 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.015 0.985 37 H 0.027 0.973 38 H 0.249 0.751 39 H 0.012 0.988 40 H 0.041 0.959 41 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.280 22.746 -8.566 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 N -0.211 5.211 4 C 0.012 3.988 5 C -0.151 4.151 6 Cl 0.024 6.976 7 C -0.015 4.015 8 C 0.341 3.659 9 O -0.407 6.407 10 N -0.346 5.346 11 C 0.032 3.968 12 C -0.110 4.110 13 H 0.132 0.868 14 C 0.018 3.982 15 N -0.345 5.345 16 C -0.372 4.372 17 H 0.090 0.910 18 C -0.253 4.253 19 N -0.594 5.594 20 Si 0.802 3.198 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.199 1.199 24 C 0.026 3.974 25 C 0.035 3.965 26 H 0.112 0.888 27 O -0.376 6.376 28 N -0.210 5.210 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.237 0.763 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.033 0.967 37 H 0.045 0.955 38 H 0.058 0.942 39 H 0.030 0.970 40 H 0.059 0.941 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.066 23.068 -8.351 24.620 hybrid contribution 0.450 -1.490 0.867 1.782 sum 2.516 21.577 -7.484 22.977 Atomic orbital electron populations 1.20818 0.82210 1.05747 1.05675 1.24085 1.00072 0.82339 0.88738 1.68463 1.09249 1.30088 1.13266 1.24010 0.88918 0.97975 0.87926 1.23014 0.89776 0.96260 1.06082 1.98444 1.04592 1.98613 1.95981 1.21517 0.90274 0.93862 0.95848 1.17893 0.86567 0.83392 0.78035 1.90870 1.13114 1.86962 1.49732 1.45883 1.11584 1.04988 1.72159 1.21056 0.93677 0.79511 1.02546 1.22437 0.96980 0.93325 0.98260 0.86838 1.21426 0.96706 0.85771 0.94327 1.44616 1.69701 1.01083 1.19132 1.19333 1.33279 0.92426 0.92149 0.90994 1.25554 1.02085 0.97078 1.00600 1.70108 1.55988 1.05189 1.28109 0.85140 0.77678 0.77422 0.79529 1.21150 1.21770 1.19927 1.21951 0.93334 0.93562 0.88565 1.23102 0.83872 0.94487 0.95038 0.88811 1.86386 1.33226 1.40634 1.77314 1.68362 1.06927 1.31975 1.13725 0.87450 0.88623 0.87713 0.76294 0.74613 0.92280 0.90148 0.96737 0.95505 0.94207 0.97005 0.94077 0.76154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 10.31 71.24 0.73 -0.20 16 2 C 0.31 5.64 7.64 138.79 1.06 6.70 16 3 N -0.50 -8.46 10.31 -187.77 -1.94 -10.40 16 4 C 0.18 2.76 11.14 84.83 0.94 3.70 16 5 C -0.12 -2.45 6.40 22.79 0.15 -2.30 16 6 Cl -0.01 -0.12 26.25 -2.72 -0.07 -0.19 16 7 C 0.13 3.23 6.79 41.98 0.29 3.52 16 8 C 0.56 15.85 7.82 86.94 0.68 16.53 16 9 O -0.53 -17.50 14.14 -3.66 -0.05 -17.55 16 10 N -0.69 -18.61 5.46 -465.46 -2.54 -21.16 16 11 C 0.16 4.58 4.50 86.38 0.39 4.97 16 12 C -0.09 -2.89 2.89 -9.61 -0.03 -2.92 16 13 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 14 C 0.14 5.84 6.75 86.73 0.59 6.43 16 15 N -0.62 -31.59 3.39 -692.00 -2.35 -33.94 16 16 C -0.24 -13.74 10.24 84.03 0.86 -12.87 16 17 H 0.07 3.99 7.85 -2.91 -0.02 3.97 16 18 C -0.06 -3.37 5.40 84.86 0.46 -2.91 16 19 N -0.95 -55.53 10.68 21.65 0.23 -55.30 16 20 Si 0.97 45.71 29.56 68.60 2.03 47.74 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 C 0.15 7.04 5.16 86.86 0.45 7.49 16 25 C 0.10 3.26 4.16 31.98 0.13 3.40 16 26 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 27 O -0.57 -19.47 12.33 -148.98 -1.84 -21.31 16 28 N -0.49 -10.77 9.59 -177.05 -1.70 -12.47 16 29 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.22 1.59 8.06 -2.91 -0.02 1.56 16 33 H 0.42 10.13 7.85 -92.71 -0.73 9.41 16 34 H 0.06 2.08 7.52 -2.39 -0.02 2.06 16 35 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.01 0.63 7.68 -2.39 -0.02 0.62 16 37 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.01 0.60 8.07 -2.39 -0.02 0.58 16 40 H 0.04 2.16 6.93 -2.39 -0.02 2.14 16 41 H 0.39 10.62 9.12 -74.05 -0.68 9.95 16 Total: -1.00 -72.98 360.65 -1.84 -74.82 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -0.31 Total: 18.24 kcal Atomic # 6 Polarization: 24.82 SS G_CDS: 6.70 Total: 31.52 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -8.30 Total: -133.26 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.89 Total: -38.86 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.07 Total: -0.19 kcal Total: -72.98 -1.84 -74.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958454463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.463 kcal (2) G-P(sol) polarization free energy of solvation -72.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds