Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31927 * 119.01538 * 2 1 4 4 C 1.32136 * 121.05513 * 180.02562 * 3 2 1 5 5 C 1.38989 * 119.12540 * 359.97438 * 4 3 2 6 6 Cl 1.73602 * 120.88902 * 180.02562 * 5 4 3 7 7 C 1.39636 * 118.22538 * 0.02562 * 5 4 3 8 8 C 1.48372 * 120.56208 * 180.02562 * 7 5 4 9 9 O 1.21489 * 120.00166 * 359.97438 * 8 7 5 10 10 N 1.34778 * 120.00107 * 179.97438 * 8 7 5 11 11 C 1.46495 * 120.00075 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47101 * 180.02562 * 11 10 8 13 13 H 1.09003 * 110.64405 * 303.31278 * 12 11 10 14 14 C 1.54316 * 110.72079 * 66.45323 * 12 11 10 15 15 N 1.47022 * 107.27320 * 140.73500 * 14 12 11 16 16 C 1.36938 * 125.65145 * 181.02283 * 15 14 12 17 17 H 1.08002 * 119.99798 * 13.61610 * 16 15 14 18 18 C 1.38805 * 120.00326 * 193.61334 * 16 15 14 19 19 N 1.31619 * 119.99643 * 27.28488 * 18 16 15 20 20 Si 1.86803 * 120.00275 * 207.28323 * 18 16 15 21 21 H 1.48496 * 109.47008 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46883 * 240.00007 * 20 18 16 23 23 H 1.48496 * 109.47035 * 120.00305 * 20 18 16 24 24 C 1.47423 * 108.69958 * 1.28573 * 15 14 12 25 25 C 1.55125 * 104.72395 * 335.55457 * 24 15 14 26 26 H 1.09001 * 111.19051 * 279.19096 * 25 24 15 27 27 O 1.42902 * 110.93665 * 155.28677 * 25 24 15 28 28 N 1.31522 * 119.01846 * 180.29648 * 2 1 3 29 29 H 1.08992 * 109.47293 * 90.00102 * 1 2 3 30 30 H 1.08999 * 109.46617 * 210.00524 * 1 2 3 31 31 H 1.09000 * 109.46799 * 329.99616 * 1 2 3 32 32 H 1.08001 * 120.43658 * 179.97438 * 4 3 2 33 33 H 0.97009 * 119.99276 * 359.97438 * 10 8 7 34 34 H 1.08998 * 109.47157 * 60.00072 * 11 10 8 35 35 H 1.08995 * 109.46843 * 300.00103 * 11 10 8 36 36 H 1.08999 * 109.88637 * 21.31506 * 14 12 11 37 37 H 1.09000 * 110.01685 * 260.22216 * 14 12 11 38 38 H 0.96994 * 120.00297 * 5.84617 * 19 18 16 39 39 H 1.09002 * 110.36499 * 94.49043 * 24 15 14 40 40 H 1.09005 * 110.36367 * 216.80049 * 24 15 14 41 41 H 0.96700 * 113.99787 * 67.96452 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1868 0.0114 -0.0005 6 17 5.9228 0.0198 -0.0005 7 6 3.4758 -1.1904 -0.0005 8 6 4.1912 -2.4902 0.0001 9 8 5.4058 -2.5151 0.0001 10 7 3.4936 -3.6434 0.0006 11 6 4.2000 -4.9268 0.0006 12 6 3.1822 -6.0691 0.0006 13 1 2.5083 -5.9834 0.8530 14 6 2.3885 -6.0932 -1.3226 15 7 2.2105 -7.5032 -1.6994 16 6 1.5736 -7.9544 -2.8245 17 1 1.3451 -7.2690 -3.6272 18 6 1.2216 -9.2927 -2.9332 19 7 0.9881 -10.0018 -1.8493 20 14 1.0791 -10.0871 -4.6179 21 1 1.3892 -9.0826 -5.6666 22 1 -0.3035 -10.5932 -4.8111 23 1 2.0379 -11.2170 -4.7149 24 6 2.8259 -8.3509 -0.6620 25 6 3.8969 -7.4463 0.0022 26 1 4.8093 -7.4137 -0.5932 27 8 4.1740 -7.8780 1.3360 28 7 2.1451 -1.1501 -0.0060 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 3.9811 2.1508 -0.0009 33 1 2.5237 -3.6235 0.0009 34 1 4.8257 -4.9972 0.8903 35 1 4.8250 -4.9975 -0.8896 36 1 2.9462 -5.5696 -2.0991 37 1 1.4159 -5.6213 -1.1829 38 1 0.9785 -9.5708 -0.9804 39 1 2.0785 -8.6578 0.0696 40 1 3.2954 -9.2241 -1.1150 41 1 4.6204 -8.7342 1.3875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958454465.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = -7.816469 kcal Electronic energy + Delta-G solvation = -26836.144830 eV Core-core repulsion = 22778.346256 eV Total energy + Delta-G solvation = -4057.798574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.75653 -39.69920 -38.44277 -37.05766 -35.41530 -34.96967 -34.42612 -33.44031 -32.38369 -29.77221 -28.81657 -27.89268 -26.48734 -25.15165 -23.88866 -23.06897 -21.18705 -20.38858 -20.04491 -18.75033 -18.13605 -17.63139 -17.01317 -16.51505 -16.20302 -15.84517 -15.53686 -15.24362 -14.67349 -14.42021 -13.96617 -13.89537 -13.67996 -13.58397 -13.42336 -13.02977 -12.82463 -12.50699 -12.24847 -12.19878 -12.03600 -11.84759 -11.74703 -11.38371 -11.19240 -10.94684 -10.75016 -10.60311 -10.55704 -10.11656 -10.07073 -9.78529 -9.61427 -9.56742 -9.37056 -9.11771 -8.48264 -7.04415 -6.15801 -3.20003 -0.09095 0.25660 1.56723 2.43411 2.67864 3.25355 3.31141 3.45200 3.48573 3.51402 3.64819 3.96250 4.16545 4.38513 4.51005 4.57137 4.82776 4.91379 5.04235 5.15842 5.21994 5.25725 5.31838 5.35529 5.53231 5.66275 5.74688 5.76337 5.83177 6.00401 6.12367 6.15311 6.28442 6.46462 6.63229 6.79339 6.89308 7.24770 7.43581 7.68229 7.92483 7.93910 8.41170 8.94339 9.74371 10.26025 11.17494 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014030 B = 0.002693 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.250201 B =10396.318380 C =11341.369019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.320 3.680 3 N -0.493 5.493 4 C 0.168 3.832 5 C -0.111 4.111 6 Cl 0.001 6.999 7 C 0.150 3.850 8 C 0.561 3.439 9 O -0.506 6.506 10 N -0.697 5.697 11 C 0.133 3.867 12 C -0.105 4.105 13 H 0.089 0.911 14 C 0.141 3.859 15 N -0.601 5.601 16 C -0.338 4.338 17 H 0.069 0.931 18 C -0.025 4.025 19 N -0.920 5.920 20 Si 1.070 2.930 21 H -0.292 1.292 22 H -0.294 1.294 23 H -0.290 1.290 24 C 0.120 3.880 25 C 0.092 3.908 26 H 0.067 0.933 27 O -0.566 6.566 28 N -0.480 5.480 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.185 0.815 33 H 0.413 0.587 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.028 0.972 38 H 0.270 0.730 39 H 0.036 0.964 40 H 0.056 0.944 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.860 21.031 6.299 22.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 N -0.207 5.207 4 C -0.001 4.001 5 C -0.143 4.143 6 Cl 0.030 6.970 7 C 0.001 3.999 8 C 0.343 3.657 9 O -0.380 6.380 10 N -0.349 5.349 11 C 0.010 3.990 12 C -0.124 4.124 13 H 0.108 0.892 14 C 0.016 3.984 15 N -0.329 5.329 16 C -0.465 4.465 17 H 0.087 0.913 18 C -0.227 4.227 19 N -0.562 5.562 20 Si 0.899 3.101 21 H -0.218 1.218 22 H -0.221 1.221 23 H -0.216 1.216 24 C -0.007 4.007 25 C 0.031 3.969 26 H 0.085 0.915 27 O -0.370 6.370 28 N -0.197 5.197 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.202 0.798 33 H 0.249 0.751 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.301 20.044 5.543 21.236 hybrid contribution 1.009 1.022 0.596 1.555 sum 5.310 21.066 6.139 22.576 Atomic orbital electron populations 1.20678 0.84389 1.04888 1.04673 1.23437 0.98746 0.82675 0.89751 1.68339 1.08956 1.30315 1.13132 1.23441 0.89215 0.97425 0.90033 1.22885 0.90005 0.95949 1.05509 1.98446 1.04020 1.98605 1.95913 1.21685 0.89605 0.94268 0.94316 1.17613 0.86711 0.82708 0.78651 1.90888 1.12009 1.86481 1.48617 1.45868 1.11461 1.05154 1.72391 1.21507 0.94542 0.80178 1.02798 1.22402 0.97112 0.92720 1.00175 0.89238 1.21385 0.96485 0.88686 0.91883 1.44404 1.65283 0.99246 1.23966 1.19817 1.37415 0.96380 0.92910 0.91316 1.25753 0.97925 0.94051 1.04954 1.70734 1.45720 1.40163 0.99553 0.83471 0.76474 0.75564 0.74563 1.21814 1.22115 1.21622 1.22216 0.93066 0.93868 0.91522 1.23085 0.97233 0.93824 0.82733 0.91547 1.86412 1.82095 1.41325 1.27197 1.68357 1.07398 1.31080 1.12887 0.88846 0.88858 0.89084 0.79763 0.75095 0.90573 0.90729 0.95103 0.95431 0.91824 0.94637 0.92558 0.77483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.31 36.01 0.37 -0.22 16 2 C 0.32 3.20 7.64 -157.31 -1.20 2.00 16 3 N -0.49 -4.77 10.31 -10.70 -0.11 -4.88 16 4 C 0.17 1.45 11.14 -17.14 -0.19 1.26 16 5 C -0.11 -1.20 6.40 -38.78 -0.25 -1.45 16 6 Cl 0.00 0.01 26.25 -51.86 -1.36 -1.35 16 7 C 0.15 1.88 6.79 -82.61 -0.56 1.31 16 8 C 0.56 7.94 7.82 -12.09 -0.09 7.85 16 9 O -0.51 -8.11 14.14 5.38 0.08 -8.04 16 10 N -0.70 -9.51 5.39 -61.09 -0.33 -9.84 16 11 C 0.13 1.94 5.01 -4.05 -0.02 1.92 16 12 C -0.10 -1.75 2.74 -88.79 -0.24 -1.99 16 13 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 14 C 0.14 2.82 6.52 -3.07 -0.02 2.80 16 15 N -0.60 -14.88 3.33 -169.94 -0.57 -15.45 16 16 C -0.34 -9.40 10.05 -15.06 -0.15 -9.55 16 17 H 0.07 1.91 7.96 -52.49 -0.42 1.49 16 18 C -0.03 -0.72 5.09 -17.43 -0.09 -0.81 16 19 N -0.92 -27.41 12.82 55.49 0.71 -26.70 16 20 Si 1.07 25.14 30.00 -169.99 -5.10 20.04 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.12 2.69 4.96 -2.41 -0.01 2.68 16 25 C 0.09 1.61 3.89 -24.47 -0.10 1.52 16 26 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 27 O -0.57 -8.99 13.47 -35.23 -0.47 -9.47 16 28 N -0.48 -5.58 9.59 -7.31 -0.07 -5.65 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.19 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.41 5.31 7.71 -40.82 -0.31 4.99 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 36 H 0.03 0.62 7.77 -51.93 -0.40 0.22 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.27 8.04 5.83 -40.82 -0.24 7.81 16 39 H 0.04 0.87 6.84 -51.93 -0.36 0.52 16 40 H 0.06 1.38 7.73 -51.93 -0.40 0.98 16 41 H 0.38 4.51 9.12 45.56 0.42 4.92 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -33.72 360.98 -8.65 -42.37 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.31 Total: 6.18 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -2.56 Total: 7.34 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -0.36 Total: -62.51 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.40 Total: -17.51 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.10 Total: 20.04 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.36 Total: -1.35 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.72 -8.65 -42.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958454465.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.554 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds