Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31927 * 119.01538 * 2 1 4 4 C 1.32136 * 121.05513 * 180.02562 * 3 2 1 5 5 C 1.38989 * 119.12540 * 359.97438 * 4 3 2 6 6 Cl 1.73602 * 120.88902 * 180.02562 * 5 4 3 7 7 C 1.39636 * 118.22538 * 0.02562 * 5 4 3 8 8 C 1.48372 * 120.56208 * 180.02562 * 7 5 4 9 9 O 1.21489 * 120.00166 * 359.97438 * 8 7 5 10 10 N 1.34778 * 120.00107 * 179.97438 * 8 7 5 11 11 C 1.46495 * 120.00075 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47101 * 180.02562 * 11 10 8 13 13 H 1.09003 * 110.64405 * 303.31278 * 12 11 10 14 14 C 1.54316 * 110.72079 * 66.45323 * 12 11 10 15 15 N 1.47022 * 107.27320 * 140.73500 * 14 12 11 16 16 C 1.36938 * 125.65145 * 181.02283 * 15 14 12 17 17 H 1.08002 * 119.99798 * 13.61610 * 16 15 14 18 18 C 1.38805 * 120.00326 * 193.61334 * 16 15 14 19 19 N 1.31619 * 119.99643 * 27.28488 * 18 16 15 20 20 Si 1.86803 * 120.00275 * 207.28323 * 18 16 15 21 21 H 1.48496 * 109.47008 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46883 * 240.00007 * 20 18 16 23 23 H 1.48496 * 109.47035 * 120.00305 * 20 18 16 24 24 C 1.47423 * 108.69958 * 1.28573 * 15 14 12 25 25 C 1.55125 * 104.72395 * 335.55457 * 24 15 14 26 26 H 1.09001 * 111.19051 * 279.19096 * 25 24 15 27 27 O 1.42902 * 110.93665 * 155.28677 * 25 24 15 28 28 N 1.31522 * 119.01846 * 180.29648 * 2 1 3 29 29 H 1.08992 * 109.47293 * 90.00102 * 1 2 3 30 30 H 1.08999 * 109.46617 * 210.00524 * 1 2 3 31 31 H 1.09000 * 109.46799 * 329.99616 * 1 2 3 32 32 H 1.08001 * 120.43658 * 179.97438 * 4 3 2 33 33 H 0.97009 * 119.99276 * 359.97438 * 10 8 7 34 34 H 1.08998 * 109.47157 * 60.00072 * 11 10 8 35 35 H 1.08995 * 109.46843 * 300.00103 * 11 10 8 36 36 H 1.08999 * 109.88637 * 21.31506 * 14 12 11 37 37 H 1.09000 * 110.01685 * 260.22216 * 14 12 11 38 38 H 0.96994 * 120.00297 * 5.84617 * 19 18 16 39 39 H 1.09002 * 110.36499 * 94.49043 * 24 15 14 40 40 H 1.09005 * 110.36367 * 216.80049 * 24 15 14 41 41 H 0.96700 * 113.99787 * 67.96452 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 -0.0005 5 6 4.1868 0.0114 -0.0005 6 17 5.9228 0.0198 -0.0005 7 6 3.4758 -1.1904 -0.0005 8 6 4.1912 -2.4902 0.0001 9 8 5.4058 -2.5151 0.0001 10 7 3.4936 -3.6434 0.0006 11 6 4.2000 -4.9268 0.0006 12 6 3.1822 -6.0691 0.0006 13 1 2.5083 -5.9834 0.8530 14 6 2.3885 -6.0932 -1.3226 15 7 2.2105 -7.5032 -1.6994 16 6 1.5736 -7.9544 -2.8245 17 1 1.3451 -7.2690 -3.6272 18 6 1.2216 -9.2927 -2.9332 19 7 0.9881 -10.0018 -1.8493 20 14 1.0791 -10.0871 -4.6179 21 1 1.3892 -9.0826 -5.6666 22 1 -0.3035 -10.5932 -4.8111 23 1 2.0379 -11.2170 -4.7149 24 6 2.8259 -8.3509 -0.6620 25 6 3.8969 -7.4463 0.0022 26 1 4.8093 -7.4137 -0.5932 27 8 4.1740 -7.8780 1.3360 28 7 2.1451 -1.1501 -0.0060 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 3.9811 2.1508 -0.0009 33 1 2.5237 -3.6235 0.0009 34 1 4.8257 -4.9972 0.8903 35 1 4.8250 -4.9975 -0.8896 36 1 2.9462 -5.5696 -2.0991 37 1 1.4159 -5.6213 -1.1829 38 1 0.9785 -9.5708 -0.9804 39 1 2.0785 -8.6578 0.0696 40 1 3.2954 -9.2241 -1.1150 41 1 4.6204 -8.7342 1.3875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958454465.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -33.692365 kcal Electronic energy + Delta-G solvation = -26837.266893 eV Core-core repulsion = 22778.346256 eV Total energy + Delta-G solvation = -4058.920637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.56456 -40.85989 -39.91221 -37.88269 -36.85190 -36.37056 -35.30155 -34.19856 -34.08660 -31.41227 -29.58103 -29.46565 -27.68703 -26.63028 -25.23253 -24.06305 -22.53794 -21.84635 -21.48299 -19.80742 -19.52458 -19.02620 -18.37016 -17.36435 -17.14028 -16.99009 -16.65847 -16.35180 -16.16389 -15.79224 -15.57282 -15.35908 -14.94176 -14.61846 -14.56903 -14.06398 -14.02235 -13.88274 -13.63738 -13.32096 -12.91266 -12.81378 -12.68704 -12.61526 -12.58185 -12.44127 -12.36500 -12.18609 -11.88043 -11.75872 -11.64403 -11.46953 -10.99876 -10.57235 -10.45329 -10.43650 -10.20910 -9.09096 -8.36128 -5.36739 -0.95357 -0.47897 0.75739 1.45960 1.57775 1.65034 1.66077 1.81835 2.40604 2.50939 2.59876 2.76159 2.98408 3.13839 3.20728 3.34111 3.43131 3.57033 3.72989 3.77327 3.93757 4.19737 4.24312 4.25815 4.41553 4.60645 4.68288 4.70674 4.75828 4.76086 4.79639 4.94192 5.08274 5.09128 5.20121 5.21211 5.38458 5.60990 6.20670 6.26740 6.62349 6.76411 6.84485 6.85500 7.65209 8.20543 8.96816 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014030 B = 0.002693 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.250201 B =10396.318380 C =11341.369019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.314 3.686 3 N -0.495 5.495 4 C 0.181 3.819 5 C -0.117 4.117 6 Cl -0.004 7.004 7 C 0.132 3.868 8 C 0.561 3.439 9 O -0.528 6.528 10 N -0.695 5.695 11 C 0.146 3.854 12 C -0.088 4.088 13 H 0.092 0.908 14 C 0.141 3.859 15 N -0.624 5.624 16 C -0.347 4.347 17 H 0.064 0.936 18 C -0.077 4.077 19 N -0.948 5.948 20 Si 1.120 2.880 21 H -0.273 1.273 22 H -0.291 1.291 23 H -0.287 1.287 24 C 0.124 3.876 25 C 0.111 3.889 26 H 0.082 0.918 27 O -0.565 6.565 28 N -0.494 5.494 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.222 0.778 33 H 0.416 0.584 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.035 0.965 37 H 0.027 0.973 38 H 0.257 0.743 39 H 0.010 0.990 40 H 0.029 0.971 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.189 22.911 6.186 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.210 5.210 4 C 0.012 3.988 5 C -0.150 4.150 6 Cl 0.026 6.974 7 C -0.016 4.016 8 C 0.344 3.656 9 O -0.404 6.404 10 N -0.346 5.346 11 C 0.023 3.977 12 C -0.107 4.107 13 H 0.110 0.890 14 C 0.016 3.984 15 N -0.352 5.352 16 C -0.475 4.475 17 H 0.082 0.918 18 C -0.273 4.273 19 N -0.591 5.591 20 Si 0.944 3.056 21 H -0.198 1.198 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.002 4.002 25 C 0.050 3.950 26 H 0.100 0.900 27 O -0.372 6.372 28 N -0.212 5.212 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.238 0.762 33 H 0.253 0.747 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.047 0.953 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 4.631 21.943 5.448 23.078 hybrid contribution 0.870 0.521 0.673 1.217 sum 5.501 22.464 6.121 23.924 Atomic orbital electron populations 1.20816 0.82310 1.05838 1.05537 1.24060 1.00033 0.82349 0.88769 1.68466 1.09308 1.30012 1.13194 1.24031 0.88884 0.98029 0.87866 1.23007 0.89836 0.96189 1.05955 1.98443 1.04433 1.98609 1.95962 1.21498 0.90242 0.93877 0.96012 1.17861 0.86555 0.83290 0.77910 1.90868 1.12924 1.86941 1.49659 1.45801 1.11611 1.04865 1.72373 1.21283 0.93669 0.79793 1.02984 1.22221 0.97086 0.93169 0.98256 0.89015 1.21488 0.97001 0.86220 0.93676 1.44665 1.65136 1.01535 1.23857 1.20082 1.36894 0.96641 0.93891 0.91785 1.27126 0.97780 0.94985 1.07420 1.70847 1.48283 1.40375 0.99599 0.82799 0.76502 0.75176 0.71087 1.19797 1.21758 1.21301 1.22129 0.93599 0.93923 0.90578 1.22792 0.96135 0.92763 0.83333 0.90049 1.86386 1.82294 1.42788 1.25739 1.68362 1.07039 1.32041 1.13751 0.87858 0.88558 0.87473 0.76202 0.74657 0.89886 0.91020 0.94727 0.95527 0.93216 0.97183 0.95277 0.75307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 10.31 71.24 0.73 -0.26 16 2 C 0.31 5.73 7.64 138.79 1.06 6.79 16 3 N -0.50 -8.45 10.31 -187.76 -1.94 -10.39 16 4 C 0.18 2.71 11.14 84.83 0.94 3.66 16 5 C -0.12 -2.36 6.40 22.79 0.15 -2.22 16 6 Cl 0.00 -0.07 26.25 -2.72 -0.07 -0.14 16 7 C 0.13 3.16 6.79 41.99 0.29 3.44 16 8 C 0.56 15.42 7.82 86.94 0.68 16.10 16 9 O -0.53 -16.54 14.14 -3.68 -0.05 -16.59 16 10 N -0.70 -18.27 5.39 -465.48 -2.51 -20.78 16 11 C 0.15 4.06 5.01 86.38 0.43 4.49 16 12 C -0.09 -2.84 2.74 -9.61 -0.03 -2.87 16 13 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 14 C 0.14 5.60 6.52 86.73 0.57 6.16 16 15 N -0.62 -31.31 3.33 -691.57 -2.30 -33.61 16 16 C -0.35 -19.55 10.05 84.03 0.84 -18.70 16 17 H 0.06 3.58 7.96 -2.91 -0.02 3.56 16 18 C -0.08 -4.42 5.09 84.86 0.43 -3.98 16 19 N -0.95 -57.84 12.82 21.65 0.28 -57.57 16 20 Si 1.12 50.91 30.00 68.60 2.06 52.97 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 24 C 0.12 5.71 4.96 86.93 0.43 6.14 16 25 C 0.11 3.79 3.89 32.06 0.12 3.92 16 26 H 0.08 2.60 8.05 -2.39 -0.02 2.59 16 27 O -0.56 -17.05 13.47 -148.98 -2.01 -19.05 16 28 N -0.49 -10.93 9.59 -177.04 -1.70 -12.63 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.22 1.52 8.06 -2.91 -0.02 1.49 16 33 H 0.42 10.36 7.71 -92.70 -0.71 9.65 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.07 2.07 8.06 -2.39 -0.02 2.05 16 36 H 0.03 1.36 7.77 -2.39 -0.02 1.34 16 37 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.26 15.91 5.83 -92.71 -0.54 15.37 16 39 H 0.01 0.53 6.84 -2.39 -0.02 0.51 16 40 H 0.03 1.47 7.73 -2.38 -0.02 1.45 16 41 H 0.40 8.79 9.12 -74.06 -0.68 8.12 16 Total: -1.00 -73.38 360.98 -1.65 -75.03 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -0.07 Total: 20.12 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 6.65 Total: 22.66 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -8.17 Total: -134.98 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -2.06 Total: -35.65 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.06 Total: 52.97 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -0.07 Total: -0.14 kcal Total: -73.38 -1.65 -75.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958454465.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.337 kcal (2) G-P(sol) polarization free energy of solvation -73.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds