Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38165 * 120.07882 * 2 1 4 4 F 1.35097 * 119.93434 * 359.97438 * 3 2 1 5 5 C 1.38588 * 120.12777 * 180.28226 * 3 2 1 6 6 C 1.38290 * 120.28921 * 359.74190 * 5 3 2 7 7 C 1.38105 * 120.16035 * 359.97438 * 6 5 3 8 8 Cl 1.73598 * 120.06543 * 179.97438 * 7 6 5 9 9 C 1.39572 * 120.07913 * 179.77041 * 2 1 3 10 10 C 1.47772 * 120.14485 * 359.97438 * 9 2 1 11 11 O 1.21560 * 120.00091 * 269.72255 * 10 9 2 12 12 N 1.34780 * 119.99894 * 89.72582 * 10 9 2 13 13 C 1.46496 * 119.99589 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47499 * 34.99519 * 13 12 10 15 15 C 1.53011 * 109.47036 * 274.99648 * 13 12 10 16 16 C 1.53002 * 109.46844 * 155.00023 * 13 12 10 17 17 C 1.53939 * 113.73909 * 278.73434 * 16 13 12 18 18 N 1.47816 * 86.03954 * 222.08461 * 17 16 13 19 19 C 1.36933 * 134.46147 * 204.64304 * 18 17 16 20 20 H 1.07992 * 120.00471 * 173.34844 * 19 18 17 21 21 C 1.38814 * 119.99601 * 353.35203 * 19 18 17 22 22 N 1.31619 * 120.00226 * 5.06525 * 21 19 18 23 23 Si 1.86799 * 119.99753 * 185.05828 * 21 19 18 24 24 H 1.48504 * 109.47072 * 94.98999 * 23 21 19 25 25 H 1.48499 * 109.47204 * 214.98735 * 23 21 19 26 26 H 1.48500 * 109.47496 * 334.99149 * 23 21 19 27 27 C 1.47579 * 91.04536 * 24.55153 * 18 17 16 28 28 H 1.09004 * 109.46964 * 270.22916 * 1 2 3 29 29 H 1.09002 * 109.47321 * 30.23170 * 1 2 3 30 30 H 1.09003 * 109.47238 * 150.23118 * 1 2 3 31 31 H 1.07997 * 119.85265 * 179.71709 * 5 3 2 32 32 H 1.07997 * 119.91503 * 179.97438 * 6 5 3 33 33 H 0.96994 * 119.99565 * 359.97438 * 12 10 9 34 34 H 1.08999 * 109.46871 * 300.00255 * 15 13 12 35 35 H 1.09002 * 109.47073 * 180.02562 * 15 13 12 36 36 H 1.08998 * 109.46722 * 59.99889 * 15 13 12 37 37 H 1.08996 * 112.94566 * 50.32906 * 16 13 12 38 38 H 1.08994 * 113.77395 * 336.35073 * 17 16 13 39 39 H 1.09001 * 113.76712 * 107.74781 * 17 16 13 40 40 H 0.97002 * 119.99772 * 180.02562 * 22 21 19 41 41 H 1.09005 * 113.77142 * 221.14971 * 27 18 17 42 42 H 1.09004 * 113.87500 * 89.76822 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1956 0.0000 4 9 1.5243 2.3657 -0.0005 5 6 3.5853 1.1968 -0.0059 6 6 4.2839 0.0033 -0.0065 7 6 3.6038 -1.1987 -0.0006 8 17 4.4831 -2.6955 -0.0019 9 6 2.2065 -1.2077 0.0048 10 6 1.4727 -2.4904 0.0106 11 8 1.1757 -3.0160 1.0656 12 7 1.1327 -3.0774 -1.1541 13 6 0.4047 -4.3487 -1.1483 14 1 -0.2836 -4.3694 -0.3034 15 6 1.3989 -5.5052 -1.0247 16 6 -0.3834 -4.4909 -2.4520 17 6 -1.7217 -3.7300 -2.4532 18 7 -2.2851 -4.9288 -3.1094 19 6 -3.3584 -5.1589 -3.9280 20 1 -3.5010 -6.1337 -4.3703 21 6 -4.2630 -4.1390 -4.1895 22 7 -4.0369 -2.9255 -3.7327 23 14 -5.8014 -4.4888 -5.1898 24 1 -6.9332 -4.7772 -4.2726 25 1 -6.1295 -3.3047 -6.0237 26 1 -5.5646 -5.6625 -6.0681 27 6 -1.2257 -5.7771 -2.5299 28 1 -0.3633 0.0041 1.0277 29 1 -0.3634 0.8879 -0.5174 30 1 -0.3634 -0.8921 -0.5102 31 1 4.1221 2.1339 -0.0105 32 1 5.3638 0.0112 -0.0115 33 1 1.3695 -2.6578 -1.9959 34 1 2.0873 -5.4844 -1.8696 35 1 0.8573 -6.4511 -1.0209 36 1 1.9604 -5.4038 -0.0960 37 1 0.2249 -4.3103 -3.3382 38 1 -2.1229 -3.5451 -1.4569 39 1 -1.7212 -2.8415 -3.0846 40 1 -4.6693 -2.2129 -3.9152 41 1 -0.8299 -6.5201 -3.2224 42 1 -1.4791 -6.1960 -1.5560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970002180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -33.629716 kcal Electronic energy + Delta-G solvation = -27240.209180 eV Core-core repulsion = 23161.371298 eV Total energy + Delta-G solvation = -4078.837882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.05450 -41.57768 -40.17480 -39.21973 -37.61545 -36.21867 -34.30336 -34.03851 -32.35047 -31.12629 -29.34658 -28.39448 -26.67131 -25.78341 -25.09737 -23.12467 -22.77520 -21.60943 -20.82722 -19.12556 -18.73260 -18.20109 -17.57376 -17.39029 -17.31992 -16.89012 -16.80891 -15.84151 -15.73935 -15.52530 -14.92652 -14.78677 -14.67061 -14.59676 -14.40063 -14.08620 -13.98878 -13.93706 -13.41995 -13.28542 -13.10350 -13.07253 -12.89953 -12.73027 -12.68543 -12.54363 -12.23654 -12.10216 -11.98767 -11.74183 -11.54277 -11.28430 -11.02374 -10.86885 -10.18286 -10.12677 -9.69349 -8.90567 -7.92230 -5.24278 -0.35943 -0.16995 0.89797 1.38396 1.44805 1.46835 1.55432 1.96243 2.19911 2.47092 3.05813 3.28309 3.34952 3.39953 3.50117 3.67009 3.76901 3.91890 3.94538 4.22867 4.28854 4.33436 4.47330 4.48891 4.56746 4.58982 4.74585 4.81263 4.85059 4.86592 4.88961 4.92499 5.00047 5.01395 5.08784 5.25469 5.33756 5.41993 5.51707 5.54788 5.65304 5.93297 6.40902 6.91773 7.06465 7.60733 8.57192 9.25402 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013670 B = 0.003150 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.828124 B = 8886.689516 C =10469.837626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 C 0.093 3.907 4 F -0.133 7.133 5 C -0.105 4.105 6 C -0.077 4.077 7 C -0.022 4.022 8 Cl -0.049 7.049 9 C -0.108 4.108 10 C 0.571 3.429 11 O -0.562 6.562 12 N -0.698 5.698 13 C 0.160 3.840 14 H 0.064 0.936 15 C -0.149 4.149 16 C -0.110 4.110 17 C 0.172 3.828 18 N -0.644 5.644 19 C -0.236 4.236 20 H 0.085 0.915 21 C -0.065 4.065 22 N -0.952 5.952 23 Si 0.975 3.025 24 H -0.291 1.291 25 H -0.294 1.294 26 H -0.265 1.265 27 C 0.130 3.870 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.186 0.814 32 H 0.184 0.816 33 H 0.411 0.589 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.105 0.895 38 H 0.005 0.995 39 H 0.039 0.961 40 H 0.248 0.752 41 H 0.065 0.935 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.051 7.326 6.757 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.083 4.083 3 C 0.074 3.926 4 F -0.111 7.111 5 C -0.124 4.124 6 C -0.095 4.095 7 C -0.049 4.049 8 Cl -0.020 7.020 9 C -0.112 4.112 10 C 0.356 3.644 11 O -0.441 6.441 12 N -0.348 5.348 13 C 0.055 3.945 14 H 0.082 0.918 15 C -0.207 4.207 16 C -0.130 4.130 17 C 0.046 3.954 18 N -0.371 5.371 19 C -0.365 4.365 20 H 0.102 0.898 21 C -0.259 4.259 22 N -0.600 5.600 23 Si 0.803 3.197 24 H -0.218 1.218 25 H -0.220 1.220 26 H -0.190 1.190 27 C 0.005 3.995 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.203 0.797 32 H 0.201 0.799 33 H 0.247 0.753 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.124 0.876 38 H 0.023 0.977 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 21.594 6.880 7.301 23.811 hybrid contribution -1.534 0.224 -0.626 1.672 sum 20.061 7.104 6.674 22.303 Atomic orbital electron populations 1.20832 0.89511 1.04070 1.03602 1.19893 0.97254 0.90740 1.00458 1.17546 0.90945 0.80242 1.03900 1.91522 1.80583 1.45223 1.93789 1.21606 0.90831 1.01131 0.98789 1.21218 1.02525 0.88044 0.97714 1.21074 0.90071 0.89572 1.04220 1.98411 1.74943 1.32017 1.96620 1.19461 0.92700 0.92992 1.06057 1.18130 0.78321 0.83841 0.84096 1.90796 1.55563 1.65590 1.32173 1.46005 1.56680 1.23763 1.08351 1.20910 0.93076 0.83177 0.97300 0.91814 1.22045 0.99061 0.97467 1.02159 1.23466 0.94702 0.97809 0.96988 1.22107 0.88333 0.91495 0.93417 1.46393 1.30774 1.06391 1.53518 1.19445 1.00181 0.97285 1.19559 0.89750 1.25629 1.01699 0.95680 1.02850 1.70013 1.37447 1.00916 1.51647 0.85114 0.79549 0.77162 0.77873 1.21799 1.22034 1.18952 1.22678 0.86592 0.93738 0.96458 0.90030 0.89319 0.91916 0.79715 0.79889 0.75254 0.90747 0.90521 0.93163 0.87647 0.97713 0.94304 0.94317 0.91693 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.44 71.24 0.67 -2.49 16 2 C -0.08 -1.90 5.92 -19.56 -0.12 -2.02 16 3 C 0.09 1.76 7.23 22.34 0.16 1.92 16 4 F -0.13 -2.68 16.47 44.97 0.74 -1.94 16 5 C -0.10 -1.28 10.02 22.37 0.22 -1.05 16 6 C -0.08 -0.95 9.81 22.25 0.22 -0.73 16 7 C -0.02 -0.42 6.35 22.60 0.14 -0.28 16 8 Cl -0.05 -0.96 28.04 -2.72 -0.08 -1.03 16 9 C -0.11 -2.62 5.63 -20.07 -0.11 -2.74 16 10 C 0.57 16.78 4.74 86.76 0.41 17.19 16 11 O -0.56 -20.73 16.77 -3.90 -0.07 -20.79 16 12 N -0.70 -18.81 5.07 -445.46 -2.26 -21.07 16 13 C 0.16 4.75 2.38 45.00 0.11 4.86 16 14 H 0.06 2.26 7.41 -2.39 -0.02 2.25 16 15 C -0.15 -3.64 9.31 71.99 0.67 -2.97 16 16 C -0.11 -3.74 3.47 -10.14 -0.04 -3.78 16 17 C 0.17 8.06 6.99 86.44 0.60 8.67 16 18 N -0.64 -32.87 3.70 -716.09 -2.65 -35.52 16 19 C -0.24 -13.30 10.70 84.03 0.90 -12.40 16 20 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 21 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 22 N -0.95 -57.68 11.51 21.65 0.25 -57.43 16 23 Si 0.97 45.88 29.56 68.60 2.03 47.91 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 C 0.13 5.00 7.64 86.49 0.66 5.66 16 28 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.09 2.06 7.64 -2.39 -0.02 2.04 16 30 H 0.06 1.84 7.08 -2.39 -0.02 1.82 16 31 H 0.19 0.94 8.06 -2.91 -0.02 0.91 16 32 H 0.18 1.02 8.06 -2.91 -0.02 0.99 16 33 H 0.41 9.49 8.59 -92.71 -0.80 8.69 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.76 7.52 -2.39 -0.02 1.74 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.01 0.26 7.99 -2.39 -0.02 0.24 16 39 H 0.04 2.02 7.37 -2.39 -0.02 2.00 16 40 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.06 2.24 8.14 -2.38 -0.02 2.23 16 42 H 0.04 1.60 8.10 -2.38 -0.02 1.59 16 Total: -1.00 -72.58 372.22 3.20 -69.38 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.26 Total: 13.94 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 4.97 Total: 6.56 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -4.66 Total: -114.02 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.07 Total: -20.79 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.74 Total: -1.94 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.03 kcal Total: -72.58 3.20 -69.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970002180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.746 kcal (2) G-P(sol) polarization free energy of solvation -72.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds