Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38454 * 119.83400 * 2 1 4 4 C 1.37851 * 120.23112 * 180.02562 * 3 2 1 5 5 C 1.39673 * 119.89854 * 0.23651 * 4 3 2 6 6 C 1.47694 * 120.15509 * 179.74394 * 5 4 3 7 7 O 1.21567 * 119.99979 * 133.34009 * 6 5 4 8 8 N 1.34783 * 119.99911 * 313.33432 * 6 5 4 9 9 C 1.47016 * 125.64870 * 4.92703 * 8 6 5 10 10 C 1.54331 * 107.27015 * 181.02417 * 9 8 6 11 11 C 1.55154 * 102.94279 * 22.18965 * 10 9 8 12 12 H 1.09007 * 111.00217 * 82.61028 * 11 10 9 13 13 N 1.46497 * 111.00448 * 206.42322 * 11 10 9 14 14 C 1.46503 * 119.99963 * 60.00307 * 13 11 10 15 15 C 1.36941 * 120.00206 * 240.00232 * 13 11 10 16 16 H 1.08002 * 119.99956 * 24.05392 * 15 13 11 17 17 C 1.38806 * 120.00061 * 204.05495 * 15 13 11 18 18 N 1.31619 * 119.99892 * 9.45847 * 17 15 13 19 19 Si 1.86795 * 119.99967 * 189.45910 * 17 15 13 20 20 H 1.48499 * 109.47105 * 89.99941 * 19 17 15 21 21 H 1.48507 * 109.47043 * 209.99849 * 19 17 15 22 22 H 1.48492 * 109.47387 * 329.99798 * 19 17 15 23 23 C 1.47421 * 125.64574 * 184.62044 * 8 6 5 24 24 C 1.39789 * 119.68083 * 359.49330 * 5 4 3 25 25 F 1.35100 * 120.11751 * 180.27200 * 24 5 4 26 26 C 1.38295 * 119.83786 * 180.02562 * 2 1 3 27 27 Cl 1.73596 * 119.95721 * 359.95969 * 26 2 1 28 28 H 1.09000 * 109.46818 * 90.00482 * 1 2 3 29 29 H 1.09002 * 109.46957 * 209.99627 * 1 2 3 30 30 H 1.08997 * 109.47485 * 329.99684 * 1 2 3 31 31 H 1.08003 * 119.87988 * 0.02562 * 3 2 1 32 32 H 1.07995 * 120.04779 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.88656 * 300.43862 * 9 8 6 34 34 H 1.08996 * 109.88533 * 61.44998 * 9 8 6 35 35 H 1.09000 * 110.71939 * 140.55929 * 10 9 8 36 36 H 1.09003 * 110.71689 * 263.64746 * 10 9 8 37 37 H 1.09001 * 109.46887 * 94.79196 * 14 13 11 38 38 H 1.08998 * 109.47281 * 214.79801 * 14 13 11 39 39 H 1.08999 * 109.46792 * 334.79457 * 14 13 11 40 40 H 0.97001 * 120.00356 * 180.02562 * 18 17 15 41 41 H 1.09004 * 110.36629 * 274.74629 * 23 8 6 42 42 H 1.09004 * 110.37220 * 37.06596 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2010 0.0000 4 6 3.5743 1.2106 -0.0005 5 6 4.2789 0.0046 -0.0061 6 6 5.7558 0.0083 -0.0124 7 8 6.3687 -0.7144 0.7492 8 7 6.4241 0.8127 -0.8626 9 6 5.8154 1.8054 -1.7601 10 6 6.9603 2.4652 -2.5573 11 6 8.0956 1.4111 -2.4720 12 1 7.9648 0.6342 -3.2254 13 7 9.4107 2.0444 -2.5977 14 6 9.8303 3.0599 -1.6287 15 6 10.2478 1.6871 -3.6209 16 1 9.8419 1.2634 -4.5277 17 6 11.6178 1.8695 -3.4926 18 7 12.1305 2.2082 -2.3287 19 14 12.7338 1.6342 -4.9719 20 1 12.8802 2.9247 -5.6918 21 1 14.0680 1.1675 -4.5162 22 1 12.1408 0.6233 -5.8837 23 6 7.8869 0.8474 -1.0419 24 6 3.5795 -1.2057 -0.0003 25 9 4.2521 -2.3773 0.0000 26 6 2.1951 -1.1996 -0.0005 27 17 1.3217 -2.6999 -0.0001 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6511 2.1337 0.0004 32 1 4.1085 2.1491 -0.0009 33 1 5.1239 1.3126 -2.4435 34 1 5.2857 2.5579 -1.1759 35 1 6.6639 2.6299 -3.5932 36 1 7.2646 3.4024 -2.0911 37 1 10.4175 2.5891 -0.8403 38 1 10.4356 3.8139 -2.1317 39 1 8.9498 3.5322 -1.1931 40 1 13.0878 2.3360 -2.2391 41 1 8.3444 1.5045 -0.3022 42 1 8.3024 -0.1575 -0.9663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972003191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -25.890802 kcal Electronic energy + Delta-G solvation = -27179.587255 eV Core-core repulsion = 23101.084958 eV Total energy + Delta-G solvation = -4078.502298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.15262 -40.40316 -39.08407 -37.45139 -36.84278 -34.89288 -33.31036 -31.64252 -30.90906 -29.86132 -28.56237 -27.35955 -26.09512 -24.08356 -23.32699 -22.58736 -22.07558 -19.90079 -19.37046 -17.66753 -17.28965 -17.24229 -16.93878 -16.23505 -15.80902 -15.75931 -14.94012 -14.87625 -14.61433 -14.25954 -14.00537 -13.83782 -13.44387 -13.33723 -13.01493 -12.68124 -12.64482 -12.53024 -12.45783 -12.34415 -12.15054 -11.81604 -11.73339 -11.47952 -11.27080 -10.91160 -10.85946 -10.52668 -10.51592 -10.31065 -9.97456 -9.89523 -9.83893 -9.18968 -9.08890 -8.63782 -8.41369 -6.84046 -5.79493 -3.29246 0.35789 0.58396 1.59398 2.54701 2.93768 3.21563 3.35099 3.41543 3.42992 3.65325 4.14116 4.25486 4.41548 4.46323 4.57210 4.89150 4.93168 4.96258 5.13085 5.19822 5.24559 5.35118 5.40673 5.45274 5.54795 5.60292 5.68683 5.72312 5.81824 5.85087 5.94839 6.18802 6.24757 6.31527 6.44110 6.56583 6.72795 6.82087 7.31652 7.62806 7.68426 7.75147 8.17454 8.32451 9.15545 9.76639 10.25478 11.24687 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023603 B = 0.002484 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.025406 B =11270.028215 C =11648.623816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.032 4.032 3 C -0.125 4.125 4 C -0.054 4.054 5 C -0.149 4.149 6 C 0.570 3.430 7 O -0.525 6.525 8 N -0.604 5.604 9 C 0.099 3.901 10 C -0.154 4.154 11 C 0.173 3.827 12 H 0.079 0.921 13 N -0.584 5.584 14 C 0.160 3.840 15 C -0.262 4.262 16 H 0.070 0.930 17 C 0.006 3.994 18 N -0.905 5.905 19 Si 0.909 3.091 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.088 3.912 24 C 0.163 3.837 25 F -0.109 7.109 26 C -0.086 4.086 27 Cl -0.043 7.043 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.032 0.968 38 H 0.045 0.955 39 H 0.000 1.000 40 H 0.254 0.746 41 H 0.072 0.928 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.410 -0.134 3.933 25.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.033 4.033 3 C -0.143 4.143 4 C -0.072 4.072 5 C -0.153 4.153 6 C 0.356 3.644 7 O -0.402 6.402 8 N -0.338 5.338 9 C -0.024 4.024 10 C -0.194 4.194 11 C 0.063 3.937 12 H 0.097 0.903 13 N -0.305 5.305 14 C 0.016 3.984 15 C -0.391 4.391 16 H 0.088 0.912 17 C -0.193 4.193 18 N -0.549 5.549 19 Si 0.739 3.261 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.036 4.036 24 C 0.142 3.858 25 F -0.087 7.087 26 C -0.114 4.114 27 Cl -0.014 7.014 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.019 0.981 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.912 -0.712 4.424 25.312 hybrid contribution 0.769 -0.457 -0.661 1.112 sum -24.143 -1.169 3.763 24.462 Atomic orbital electron populations 1.20962 0.89252 1.04104 1.03592 1.19822 0.97252 0.90474 0.95791 1.21010 0.93618 0.97580 1.02107 1.21460 0.94183 0.97138 0.94454 1.19998 0.94658 0.92591 1.08088 1.17504 0.85692 0.80412 0.80757 1.90843 1.68908 1.41230 1.39221 1.48410 1.09286 1.37219 1.38848 1.22234 0.97066 0.90720 0.92366 1.23244 0.95690 1.00697 0.99770 1.21509 0.86329 0.92885 0.93019 0.90264 1.43852 1.13300 1.41977 1.31334 1.20835 0.93954 0.90989 0.92665 1.19223 0.87330 1.39165 0.93428 0.91177 1.25116 0.96962 1.00580 0.96641 1.70055 1.11532 1.51465 1.21836 0.86194 0.80171 0.77902 0.81880 1.21401 1.21645 1.20399 1.23217 0.77227 1.02525 1.00606 1.17274 0.87765 0.81519 0.99289 1.91614 1.79940 1.44407 1.92771 1.20709 0.90135 0.89190 1.11343 1.98380 1.75394 1.30706 1.96924 0.89832 0.90398 0.90312 0.83685 0.83398 0.91644 0.91826 0.90440 0.90365 0.94922 0.93589 0.98143 0.93549 0.90995 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.60 36.01 0.35 -0.29 16 2 C -0.03 -0.26 5.89 -104.52 -0.62 -0.88 16 3 C -0.12 -0.89 9.67 -39.64 -0.38 -1.28 16 4 C -0.05 -0.51 8.52 -39.19 -0.33 -0.84 16 5 C -0.15 -1.98 5.44 -104.92 -0.57 -2.55 16 6 C 0.57 9.69 7.21 -12.40 -0.09 9.60 16 7 O -0.53 -11.09 16.83 5.31 0.09 -11.00 16 8 N -0.60 -9.72 3.32 -171.55 -0.57 -10.29 16 9 C 0.10 1.24 5.62 -3.06 -0.02 1.22 16 10 C -0.15 -2.28 6.49 -24.89 -0.16 -2.44 16 11 C 0.17 3.35 3.55 -65.67 -0.23 3.11 16 12 H 0.08 1.56 7.96 -51.92 -0.41 1.15 16 13 N -0.58 -13.89 2.96 -170.90 -0.51 -14.40 16 14 C 0.16 3.74 7.54 59.85 0.45 4.19 16 15 C -0.26 -6.93 9.61 -15.06 -0.14 -7.07 16 16 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 17 C 0.01 0.16 5.17 -17.43 -0.09 0.07 16 18 N -0.90 -25.78 10.58 55.49 0.59 -25.20 16 19 Si 0.91 21.40 29.56 -169.99 -5.03 16.37 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.09 1.68 6.44 -2.41 -0.02 1.66 16 24 C 0.16 2.21 7.23 -38.93 -0.28 1.93 16 25 F -0.11 -1.75 16.00 2.25 0.04 -1.72 16 26 C -0.09 -0.93 6.31 -39.49 -0.25 -1.18 16 27 Cl -0.04 -0.43 26.93 -51.86 -1.40 -1.83 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.43 6.88 -51.93 -0.36 0.07 16 30 H 0.08 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.15 0.58 8.06 -52.48 -0.42 0.15 16 32 H 0.15 1.15 5.85 -52.49 -0.31 0.84 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.62 5.94 -51.93 -0.31 0.31 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.20 6.47 -51.93 -0.34 0.86 16 37 H 0.03 0.84 7.35 -51.93 -0.38 0.46 16 38 H 0.05 1.16 7.29 -51.93 -0.38 0.78 16 39 H 0.00 0.00 6.38 -51.93 -0.33 -0.33 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.07 1.45 6.97 -51.93 -0.36 1.09 16 42 H 0.07 1.58 8.08 -51.93 -0.42 1.16 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -31.87 357.70 -9.04 -40.90 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -5.25 Total: -3.49 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -2.39 Total: 5.26 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.49 Total: -49.89 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.40 Total: -1.83 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.87 -9.04 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972003191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.010 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds