Wall clock time and date at job start Sat Apr 11 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38446 * 119.83899 * 2 1 4 4 C 1.37852 * 120.23252 * 179.97438 * 3 2 1 5 5 C 1.39669 * 119.90045 * 0.02562 * 4 3 2 6 6 C 1.47698 * 120.15920 * 179.97438 * 5 4 3 7 7 O 1.21570 * 120.00038 * 143.91397 * 6 5 4 8 8 N 1.34774 * 120.00279 * 323.91623 * 6 5 4 9 9 C 1.47430 * 125.64570 * 354.69581 * 8 6 5 10 10 C 1.54908 * 104.82886 * 204.09503 * 9 8 6 11 11 C 1.55155 * 101.58636 * 322.99042 * 10 9 8 12 12 H 1.09000 * 110.87102 * 277.07476 * 11 10 9 13 13 N 1.46497 * 110.72015 * 153.86599 * 11 10 9 14 14 C 1.46493 * 120.00004 * 305.02436 * 13 11 10 15 15 C 1.36938 * 119.99852 * 125.02796 * 13 11 10 16 16 H 1.08007 * 119.99827 * 341.79480 * 15 13 11 17 17 C 1.38805 * 120.00109 * 161.51702 * 15 13 11 18 18 N 1.31618 * 120.00093 * 345.96841 * 17 15 13 19 19 Si 1.86806 * 119.99967 * 165.97300 * 17 15 13 20 20 H 1.48496 * 109.47233 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47024 * 120.00216 * 19 17 15 22 22 H 1.48506 * 109.46833 * 239.99878 * 19 17 15 23 23 C 1.47017 * 125.65093 * 174.65753 * 8 6 5 24 24 C 1.39796 * 119.68317 * 0.27098 * 5 4 3 25 25 F 1.35092 * 120.11988 * 179.73058 * 24 5 4 26 26 C 1.38300 * 119.83388 * 179.97438 * 2 1 3 27 27 Cl 1.73602 * 119.95524 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.47194 * 89.99904 * 1 2 3 29 29 H 1.09000 * 109.46957 * 210.00145 * 1 2 3 30 30 H 1.09001 * 109.47171 * 329.99697 * 1 2 3 31 31 H 1.08000 * 119.88427 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.04976 * 180.02562 * 4 3 2 33 33 H 1.09005 * 110.36561 * 322.93175 * 9 8 6 34 34 H 1.08999 * 110.36549 * 85.14911 * 9 8 6 35 35 H 1.09010 * 111.00249 * 204.91575 * 10 9 8 36 36 H 1.08999 * 111.00331 * 81.06819 * 10 9 8 37 37 H 1.09008 * 109.47056 * 264.99072 * 14 13 11 38 38 H 1.08996 * 109.47567 * 24.99315 * 14 13 11 39 39 H 1.09002 * 109.47075 * 144.99987 * 14 13 11 40 40 H 0.97002 * 120.00208 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.88196 * 59.55815 * 23 8 6 42 42 H 1.08996 * 109.88266 * 298.39087 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2009 0.0000 4 6 3.5743 1.2104 0.0005 5 6 4.2789 0.0044 0.0005 6 6 5.7559 0.0079 0.0005 7 8 6.3657 -0.8415 0.6206 8 7 6.4276 0.9527 -0.6869 9 6 5.8217 1.9694 -1.5659 10 6 6.9499 2.3648 -2.5511 11 6 8.1979 2.3188 -1.6304 12 1 8.3008 3.2476 -1.0692 13 7 9.4081 2.0500 -2.4109 14 6 9.4762 0.8676 -3.2730 15 6 10.4759 2.9040 -2.3344 16 1 10.3406 3.9047 -1.9511 17 6 11.7331 2.4817 -2.7441 18 7 11.9651 1.2014 -2.9421 19 14 13.0958 3.7306 -3.0142 20 1 12.5825 5.0937 -2.7250 21 1 14.2320 3.4274 -2.1075 22 1 13.5563 3.6634 -4.4245 23 6 7.8857 1.1407 -0.6837 24 6 3.5794 -1.2060 -0.0058 25 9 4.2520 -2.3776 -0.0113 26 6 2.1950 -1.1997 0.0005 27 17 1.3215 -2.6999 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6513 2.1336 0.0004 32 1 4.1087 2.1489 0.0009 33 1 4.9756 1.5468 -2.1079 34 1 5.5044 2.8342 -0.9832 35 1 6.7911 3.3691 -2.9442 36 1 7.0342 1.6392 -3.3601 37 1 9.9569 0.0516 -2.7334 38 1 8.4681 0.5690 -3.5604 39 1 10.0543 1.1024 -4.1667 40 1 12.8436 0.9063 -3.2287 41 1 8.3768 0.2363 -1.0430 42 1 8.2271 1.3748 0.3245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972003192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:02 Heat of formation + Delta-G solvation = -23.455225 kcal Electronic energy + Delta-G solvation = -27239.088460 eV Core-core repulsion = 23160.691777 eV Total energy + Delta-G solvation = -4078.396683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.11628 -40.40924 -39.07384 -37.45467 -36.83473 -34.90143 -33.30520 -31.64633 -30.88365 -29.82440 -28.57584 -27.36510 -26.08346 -24.07769 -23.32725 -22.54880 -22.11477 -19.97980 -19.24728 -17.66926 -17.24777 -17.11199 -17.00442 -16.26726 -15.81861 -15.66530 -14.95239 -14.87892 -14.68395 -14.24670 -13.95921 -13.81949 -13.45343 -13.34194 -13.01722 -12.73597 -12.61089 -12.54773 -12.33522 -12.22681 -12.02681 -11.91165 -11.79945 -11.43861 -11.25271 -10.95655 -10.83782 -10.60611 -10.46613 -10.31039 -9.96869 -9.85097 -9.81370 -9.18199 -9.08079 -8.60262 -8.40100 -6.90583 -5.78649 -3.23104 0.33409 0.59263 1.60627 2.56443 2.98829 3.26950 3.35035 3.42028 3.44139 3.66873 4.15122 4.27227 4.42505 4.46726 4.57026 4.88337 4.92906 4.97573 5.13090 5.18101 5.25524 5.33368 5.39573 5.45334 5.55121 5.58000 5.69509 5.72740 5.80012 5.84165 5.92170 6.19673 6.27404 6.30221 6.45208 6.59796 6.78833 6.80959 7.35729 7.64885 7.67814 7.77346 8.21042 8.30157 9.15289 9.78182 10.24998 11.26002 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.027156 B = 0.002477 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.840114 B =11301.683795 C =11862.642991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.030 4.030 3 C -0.128 4.128 4 C -0.052 4.052 5 C -0.153 4.153 6 C 0.567 3.433 7 O -0.525 6.525 8 N -0.604 5.604 9 C 0.097 3.903 10 C -0.154 4.154 11 C 0.174 3.826 12 H 0.080 0.920 13 N -0.586 5.586 14 C 0.160 3.840 15 C -0.260 4.260 16 H 0.073 0.927 17 C 0.002 3.998 18 N -0.905 5.905 19 Si 0.907 3.093 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.086 3.914 24 C 0.167 3.833 25 F -0.107 7.107 26 C -0.089 4.089 27 Cl -0.043 7.043 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.029 0.971 38 H 0.001 0.999 39 H 0.049 0.951 40 H 0.253 0.747 41 H 0.076 0.924 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.617 0.861 4.037 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.031 4.031 3 C -0.146 4.146 4 C -0.071 4.071 5 C -0.157 4.157 6 C 0.354 3.646 7 O -0.402 6.402 8 N -0.337 5.337 9 C -0.026 4.026 10 C -0.194 4.194 11 C 0.063 3.937 12 H 0.098 0.902 13 N -0.307 5.307 14 C 0.016 3.984 15 C -0.389 4.389 16 H 0.091 0.909 17 C -0.197 4.197 18 N -0.549 5.549 19 Si 0.737 3.263 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C -0.038 4.038 24 C 0.145 3.855 25 F -0.085 7.085 26 C -0.116 4.116 27 Cl -0.014 7.014 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.163 0.837 32 H 0.167 0.833 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.019 0.981 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.140 0.076 4.327 25.510 hybrid contribution 0.915 0.114 -0.115 0.929 sum -24.225 0.190 4.213 24.589 Atomic orbital electron populations 1.20966 0.89263 1.04112 1.03597 1.19832 0.97247 0.90492 0.95559 1.21013 0.93656 0.97565 1.02364 1.21541 0.94202 0.97301 0.94044 1.20035 0.94651 0.92530 1.08528 1.17532 0.85662 0.81254 0.80119 1.90848 1.69123 1.36519 1.43693 1.48413 1.09195 1.30859 1.45247 1.22526 0.97276 0.90757 0.92042 1.23381 0.95314 1.02202 0.98487 1.21343 0.87002 0.95005 0.90357 0.90185 1.43988 1.12099 1.27598 1.46982 1.20835 0.94209 0.88895 0.94438 1.19294 0.86530 0.93168 1.39956 0.90897 1.24991 0.97206 0.95819 1.01639 1.70119 1.21718 1.12555 1.50529 0.86146 0.81975 0.80585 0.77564 1.20291 1.21727 1.21573 1.23028 0.77400 1.02157 1.01229 1.17319 0.87744 0.81658 0.98754 1.91622 1.79923 1.44286 1.92624 1.20725 0.90165 0.89190 1.11564 1.98380 1.75385 1.30725 1.96937 0.89820 0.90388 0.90305 0.83689 0.83298 0.91099 0.91358 0.90146 0.90277 0.95246 0.98071 0.93183 0.93636 0.90609 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.60 36.01 0.35 -0.30 16 2 C -0.03 -0.24 5.89 -104.52 -0.62 -0.86 16 3 C -0.13 -0.91 9.67 -39.65 -0.38 -1.29 16 4 C -0.05 -0.49 8.17 -39.19 -0.32 -0.81 16 5 C -0.15 -2.05 5.42 -104.92 -0.57 -2.62 16 6 C 0.57 9.74 7.39 -12.40 -0.09 9.65 16 7 O -0.52 -11.25 16.46 5.30 0.09 -11.16 16 8 N -0.60 -9.69 3.33 -171.69 -0.57 -10.26 16 9 C 0.10 1.18 5.21 -2.53 -0.01 1.16 16 10 C -0.15 -2.28 6.59 -24.58 -0.16 -2.44 16 11 C 0.17 3.27 3.45 -66.10 -0.23 3.04 16 12 H 0.08 1.46 7.90 -51.93 -0.41 1.05 16 13 N -0.59 -13.98 2.94 -171.39 -0.50 -14.48 16 14 C 0.16 3.87 7.73 59.84 0.46 4.34 16 15 C -0.26 -6.84 9.67 -15.06 -0.15 -6.99 16 16 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 17 C 0.00 0.06 5.09 -17.43 -0.09 -0.03 16 18 N -0.90 -26.01 10.50 55.49 0.58 -25.42 16 19 Si 0.91 21.34 29.58 -169.99 -5.03 16.31 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.09 1.64 6.51 -3.07 -0.02 1.62 16 24 C 0.17 2.29 7.22 -38.92 -0.28 2.01 16 25 F -0.11 -1.75 15.72 2.25 0.04 -1.71 16 26 C -0.09 -0.96 6.31 -39.48 -0.25 -1.21 16 27 Cl -0.04 -0.44 26.93 -51.86 -1.40 -1.84 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.43 6.88 -51.93 -0.36 0.07 16 30 H 0.08 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.15 1.12 5.71 -52.49 -0.30 0.82 16 33 H 0.07 0.75 7.26 -51.93 -0.38 0.37 16 34 H 0.07 0.64 6.89 -51.93 -0.36 0.28 16 35 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 36 H 0.08 1.29 6.14 -51.93 -0.32 0.97 16 37 H 0.03 0.79 7.39 -51.92 -0.38 0.40 16 38 H 0.00 0.02 6.12 -51.93 -0.32 -0.30 16 39 H 0.05 1.30 7.05 -51.93 -0.37 0.94 16 40 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.08 1.69 7.06 -51.93 -0.37 1.32 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -32.36 355.78 -9.00 -41.36 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -5.21 Total: -3.44 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -2.36 Total: 5.27 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.49 Total: -50.16 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.40 Total: -1.84 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.36 -9.00 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972003192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.902 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds