Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 120.00238 * 2 1 4 4 H 1.48504 * 109.46578 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46964 * 120.00456 * 3 2 1 6 6 H 1.48494 * 109.47284 * 240.00573 * 3 2 1 7 7 C 1.38812 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00386 * 163.41355 * 7 2 1 9 9 N 1.36940 * 119.99678 * 343.40636 * 7 2 1 10 10 C 1.47165 * 121.08052 * 154.46834 * 9 7 2 11 11 C 1.53263 * 108.58180 * 128.79182 * 10 9 7 12 12 O 1.43131 * 109.23235 * 52.97348 * 11 10 9 13 13 C 1.41883 * 114.36245 * 299.11359 * 12 11 10 14 14 C 1.54377 * 110.71044 * 296.75668 * 13 12 11 15 15 C 1.54464 * 102.86946 * 276.29422 * 14 13 12 16 16 N 1.47088 * 107.29091 * 338.49644 * 15 14 13 17 17 C 1.34773 * 125.62589 * 178.98620 * 16 15 14 18 18 O 1.21737 * 119.99785 * 180.02562 * 17 16 15 19 19 C 1.46349 * 120.00442 * 0.02788 * 17 16 15 20 20 C 1.36730 * 125.44158 * 179.97438 * 19 17 16 21 21 C 1.37334 * 113.33389 * 180.02562 * 20 19 17 22 22 C 1.34213 * 115.04885 * 0.02562 * 21 20 19 23 23 F 1.35092 * 124.54346 * 179.97438 * 22 21 20 24 24 S 1.70617 * 110.91138 * 359.72147 * 22 21 20 25 25 C 1.47571 * 108.74204 * 359.02701 * 16 15 14 26 26 C 1.47333 * 121.07773 * 334.18876 * 9 7 2 27 27 H 0.96994 * 119.99751 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.61703 * 248.52641 * 10 9 7 29 29 H 1.09009 * 109.61684 * 9.06163 * 10 9 7 30 30 H 1.09003 * 109.51409 * 172.89690 * 11 10 9 31 31 H 1.08998 * 109.51638 * 293.04788 * 11 10 9 32 32 H 1.09003 * 110.74076 * 34.63752 * 14 13 12 33 33 H 1.09005 * 110.73689 * 157.95300 * 14 13 12 34 34 H 1.08998 * 109.88287 * 97.92474 * 15 14 13 35 35 H 1.09006 * 109.87848 * 219.08156 * 15 14 13 36 36 H 1.08005 * 123.33064 * 0.04009 * 20 19 17 37 37 H 1.08001 * 122.48138 * 179.97438 * 21 20 19 38 38 H 1.09007 * 110.37338 * 264.46851 * 25 16 15 39 39 H 1.09003 * 110.37697 * 142.13157 * 25 16 15 40 40 H 1.09004 * 109.68421 * 348.91053 * 26 9 7 41 41 H 1.09003 * 109.68329 * 109.45858 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1041 1.6963 1.2124 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0566 -1.2215 -0.2675 9 7 1.3684 -2.3635 0.3376 10 6 1.8423 -3.6656 -0.1580 11 6 1.9912 -4.6172 1.0341 12 8 0.7657 -4.6425 1.7732 13 6 0.3790 -3.3867 2.3084 14 6 1.4172 -2.8883 3.3364 15 6 0.9905 -3.6097 4.6338 16 7 -0.4216 -3.9906 4.4781 17 6 -1.1595 -4.6583 5.3869 18 8 -2.3242 -4.9218 5.1503 19 6 -0.5606 -5.0666 6.6584 20 6 -1.2038 -5.7452 7.6560 21 6 -0.4043 -6.0010 8.7429 22 6 0.8546 -5.5468 8.6418 23 9 1.8003 -5.6920 9.5956 24 16 1.1025 -4.7678 7.1443 25 6 -0.8968 -3.5218 3.1619 26 6 0.1844 -2.3505 1.2145 27 1 -0.4849 0.8400 0.0004 28 1 1.1189 -4.0737 -0.8640 29 1 2.8072 -3.5409 -0.6497 30 1 2.2194 -5.6201 0.6732 31 1 2.7981 -4.2693 1.6791 32 1 2.4242 -3.1853 3.0431 33 1 1.3525 -1.8068 3.4570 34 1 1.6008 -4.5008 4.7804 35 1 1.1014 -2.9379 5.4851 36 1 -2.2381 -6.0501 7.5952 37 1 -0.7622 -6.5279 9.6151 38 1 -1.3923 -2.5557 3.2594 39 1 -1.5734 -4.2533 2.7201 40 1 0.0697 -1.3632 1.6619 41 1 -0.7049 -2.5966 0.6342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972694321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -43.650116 kcal Electronic energy + Delta-G solvation = -27855.746357 eV Core-core repulsion = 23778.517664 eV Total energy + Delta-G solvation = -4077.228693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.35326 -40.39966 -39.02863 -37.58527 -36.15978 -34.53045 -31.88054 -31.33565 -29.85253 -29.52690 -27.50750 -26.10118 -24.83332 -23.64220 -22.86322 -21.82844 -20.87750 -19.70535 -19.09644 -18.29792 -17.22255 -16.97133 -16.62284 -16.32196 -16.03041 -15.39363 -15.22652 -15.05463 -14.74016 -14.44806 -14.34738 -13.85524 -13.61619 -13.47655 -13.15704 -12.85304 -12.79509 -12.71767 -12.48909 -12.26034 -12.19357 -11.57726 -11.15464 -11.09470 -11.02889 -10.90898 -10.75445 -10.36643 -10.33309 -10.12401 -10.01036 -9.63033 -9.15678 -9.08243 -9.03045 -8.61238 -8.53336 -6.83129 -5.91598 -3.34450 0.08406 0.76420 1.35989 1.96086 2.88412 3.09206 3.29946 3.36715 3.37215 4.01527 4.07478 4.35093 4.42304 4.69842 4.94757 4.95899 5.02361 5.07189 5.24229 5.32779 5.43228 5.49632 5.51751 5.68443 5.73392 5.78723 5.88743 5.89300 5.96543 6.06135 6.13040 6.21381 6.33364 6.40077 6.54852 6.72293 6.97627 7.35075 7.45050 7.64253 7.83639 8.05297 8.24458 9.03177 9.66185 10.23349 11.16939 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.003112 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.491480 B = 8995.249913 C = 9300.451723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.592 5.592 10 C 0.109 3.891 11 C 0.045 3.955 12 O -0.373 6.373 13 C 0.085 3.915 14 C -0.138 4.138 15 C 0.088 3.912 16 N -0.605 5.605 17 C 0.604 3.396 18 O -0.530 6.530 19 C -0.252 4.252 20 C -0.040 4.040 21 C -0.184 4.184 22 C -0.044 4.044 23 F -0.103 7.103 24 S 0.245 5.755 25 C 0.126 3.874 26 C 0.163 3.837 27 H 0.257 0.743 28 H 0.027 0.973 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.163 0.837 37 H 0.154 0.846 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 -9.738 14.662 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.316 5.316 10 C -0.017 4.017 11 C -0.032 4.032 12 O -0.292 6.292 13 C 0.043 3.957 14 C -0.176 4.176 15 C -0.037 4.037 16 N -0.338 5.338 17 C 0.392 3.608 18 O -0.409 6.409 19 C -0.373 4.373 20 C -0.072 4.072 21 C -0.217 4.217 22 C -0.182 4.182 23 F -0.082 7.082 24 S 0.511 5.489 25 C 0.004 3.996 26 C 0.036 3.964 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.181 0.819 37 H 0.172 0.828 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.140 -9.221 13.989 17.046 hybrid contribution -0.253 0.260 0.998 1.062 sum 2.887 -8.961 14.987 17.699 Atomic orbital electron populations 1.69998 1.05207 1.25899 1.53558 1.25024 0.95326 0.98392 1.00711 0.86356 0.78913 0.83235 0.78194 1.21533 1.20946 1.20845 1.19120 0.92508 0.84305 1.42464 0.91343 1.44042 1.32605 1.01229 1.53728 1.21592 0.98692 0.87529 0.93918 1.23119 0.86209 0.99863 0.94056 1.87667 1.41227 1.29787 1.70558 1.22631 0.92261 0.86696 0.94079 1.23028 1.01097 1.01291 0.92175 1.22258 0.81908 0.99499 1.00013 1.48386 1.12145 1.55344 1.17920 1.16332 0.85222 0.77826 0.81460 1.90854 1.15703 1.56356 1.77949 1.24519 0.97665 1.13607 1.01472 1.20444 1.01417 0.95261 0.90119 1.20259 0.92323 1.06634 1.02452 1.22563 0.90812 1.09538 0.95250 1.91517 1.61907 1.93980 1.60816 1.84042 1.08777 1.51683 1.04405 1.22176 0.96321 1.00815 0.80245 1.21051 0.89569 0.96677 0.89068 0.93329 0.95469 0.91857 0.89858 0.93432 0.89127 0.88933 0.91014 0.90973 0.81909 0.82808 0.89129 0.89270 0.88319 0.95055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 11.12 55.49 0.62 -23.94 16 2 C 0.00 0.11 4.96 -17.43 -0.09 0.03 16 3 Si 0.90 20.38 29.59 -169.99 -5.03 15.35 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.25 -6.45 9.66 -15.06 -0.15 -6.60 16 8 H 0.07 1.70 7.88 -52.49 -0.41 1.28 16 9 N -0.59 -13.69 2.99 -172.51 -0.52 -14.20 16 10 C 0.11 2.13 6.71 -3.54 -0.02 2.10 16 11 C 0.05 0.75 6.78 37.29 0.25 1.00 16 12 O -0.37 -6.82 10.29 -35.22 -0.36 -7.18 16 13 C 0.09 1.52 0.84 -89.87 -0.08 1.45 16 14 C -0.14 -2.12 5.86 -25.24 -0.15 -2.27 16 15 C 0.09 1.15 5.18 -2.95 -0.02 1.13 16 16 N -0.61 -9.23 3.33 -172.43 -0.57 -9.80 16 17 C 0.60 9.42 7.81 -13.00 -0.10 9.32 16 18 O -0.53 -9.80 17.11 5.16 0.09 -9.71 16 19 C -0.25 -3.15 6.38 -36.87 -0.24 -3.38 16 20 C -0.04 -0.43 10.00 -40.46 -0.40 -0.83 16 21 C -0.18 -1.75 10.16 -41.33 -0.42 -2.17 16 22 C -0.04 -0.46 8.10 29.31 0.24 -0.22 16 23 F -0.10 -1.10 17.32 2.25 0.04 -1.06 16 24 S 0.25 2.50 18.41 -107.50 -1.98 0.52 16 25 C 0.13 2.12 6.09 -2.89 -0.02 2.10 16 26 C 0.16 3.56 4.03 -4.13 -0.02 3.55 16 27 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.17 7.96 -51.92 -0.41 0.75 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.75 6.22 -51.93 -0.32 0.42 16 32 H 0.09 1.38 6.07 -51.93 -0.32 1.06 16 33 H 0.09 1.49 7.81 -51.93 -0.41 1.08 16 34 H 0.07 0.86 6.81 -51.93 -0.35 0.51 16 35 H 0.07 0.81 6.99 -51.93 -0.36 0.45 16 36 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.09 1.48 7.99 -51.93 -0.42 1.06 16 39 H 0.09 1.58 8.05 -51.93 -0.42 1.16 16 40 H 0.10 2.36 5.92 -51.93 -0.31 2.05 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -29.63 344.60 -8.70 -38.33 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.98 Total: 1.30 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -1.20 Total: 5.20 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -0.47 Total: -47.95 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.27 Total: -16.89 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.98 Total: 0.52 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.63 -8.70 -38.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972694321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.317 kcal (2) G-P(sol) polarization free energy of solvation -29.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds