Wall clock time and date at job start Sat Apr 11 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 110.78491 * 2 1 4 4 C 1.54327 * 110.72121 * 236.76130 * 2 1 3 5 5 N 1.47030 * 107.26959 * 263.83282 * 4 2 1 6 6 C 1.36938 * 125.64708 * 181.09369 * 5 4 2 7 7 H 1.08001 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99827 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00298 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99836 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47144 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47148 * 120.00043 * 10 8 6 13 13 H 1.48501 * 109.47064 * 239.99864 * 10 8 6 14 14 C 1.47422 * 108.70329 * 1.05411 * 5 4 2 15 15 C 1.54913 * 104.83458 * 335.87353 * 14 5 4 16 16 H 1.08993 * 111.00545 * 155.11954 * 15 14 5 17 17 N 1.46500 * 111.00304 * 278.93630 * 15 14 5 18 18 C 1.34773 * 119.99802 * 273.54097 * 17 15 14 19 19 O 1.21574 * 120.00019 * 0.02562 * 18 17 15 20 20 C 1.47691 * 120.00053 * 180.02562 * 18 17 15 21 21 C 1.39659 * 120.15737 * 359.97438 * 20 18 17 22 22 C 1.37975 * 119.86136 * 180.02562 * 21 20 18 23 23 Cl 1.73599 * 119.90038 * 180.02562 * 22 21 20 24 24 C 1.38563 * 120.19285 * 359.97438 * 22 21 20 25 25 C 1.38190 * 120.32699 * 0.02562 * 24 22 21 26 26 C 1.38325 * 120.13013 * 359.97438 * 25 24 22 27 27 F 1.35098 * 120.09493 * 180.02562 * 26 25 24 28 28 H 1.09003 * 109.47231 * 296.76626 * 1 2 3 29 29 H 1.08997 * 109.47058 * 56.76140 * 1 2 3 30 30 H 1.08999 * 109.47064 * 176.76543 * 1 2 3 31 31 H 1.08999 * 109.47356 * 183.24272 * 3 2 1 32 32 H 1.09009 * 109.46448 * 303.24032 * 3 2 1 33 33 H 1.08999 * 109.46968 * 63.23326 * 3 2 1 34 34 H 1.08992 * 109.88496 * 144.41510 * 4 2 1 35 35 H 1.09001 * 109.88089 * 23.24551 * 4 2 1 36 36 H 0.97000 * 120.00141 * 179.97438 * 9 8 6 37 37 H 1.08996 * 110.36668 * 217.03305 * 14 5 4 38 38 H 1.09005 * 110.36875 * 94.71023 * 14 5 4 39 39 H 0.97002 * 119.99854 * 93.54901 * 17 15 14 40 40 H 1.07999 * 120.06913 * 0.03936 * 21 20 18 41 41 H 1.08000 * 119.83566 * 180.02562 * 24 22 21 42 42 H 1.07994 * 119.93476 * 180.27362 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0760 -0.7912 -1.2073 5 7 2.3715 -2.1532 -0.7390 6 6 2.8944 -3.1634 -1.5014 7 1 3.1250 -2.9905 -2.5423 8 6 3.1280 -4.4096 -0.9365 9 7 2.8474 -4.6203 0.3321 10 14 3.8406 -5.7879 -1.9767 11 1 4.0662 -5.2979 -3.3602 12 1 5.1317 -6.2320 -1.3927 13 1 2.8909 -6.9292 -2.0039 14 6 2.0126 -2.2509 0.6875 15 6 2.0790 -0.7955 1.2138 16 1 1.4401 -0.6664 2.0874 17 7 3.4595 -0.4083 1.5144 18 6 3.9888 -0.6840 2.7228 19 8 3.3207 -1.2544 3.5633 20 6 5.3804 -0.2931 3.0261 21 6 6.1510 0.3618 2.0630 22 6 7.4505 0.7236 2.3527 23 17 8.4091 1.5383 1.1564 24 6 7.9923 0.4396 3.5959 25 6 7.2369 -0.2081 4.5548 26 6 5.9326 -0.5770 4.2788 27 9 5.1946 -1.2097 5.2169 28 1 -0.3634 0.4628 0.9176 29 1 -0.3633 0.5633 -0.8595 30 1 -0.3633 -1.0260 -0.0580 31 1 3.1610 1.4061 -0.0581 32 1 1.6751 1.9700 -0.8596 33 1 1.7691 1.9343 0.9175 34 1 2.9868 -0.3208 -1.5775 35 1 1.3262 -0.8255 -1.9977 36 1 3.0104 -5.4912 0.7268 37 1 2.7292 -2.8788 1.2169 38 1 1.0038 -2.6488 0.7986 39 1 3.9926 0.0466 0.8437 40 1 5.7305 0.5847 1.0935 41 1 9.0101 0.7258 3.8167 42 1 7.6641 -0.4224 5.5233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974812959.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:35 Heat of formation + Delta-G solvation = -31.709917 kcal Electronic energy + Delta-G solvation = -28088.081682 eV Core-core repulsion = 24009.327049 eV Total energy + Delta-G solvation = -4078.754633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.87702 -40.14244 -38.96541 -37.69054 -36.58156 -33.90201 -33.22151 -31.58103 -30.70231 -30.43566 -28.13419 -26.86433 -25.62869 -24.49617 -23.40124 -22.64378 -20.81975 -19.87323 -19.01565 -17.99603 -17.21512 -16.77732 -16.69149 -15.77258 -15.74078 -15.55387 -14.74270 -14.66989 -14.20740 -13.93188 -13.81777 -13.67236 -13.51551 -13.40443 -13.17607 -12.85664 -12.59678 -12.21446 -11.94470 -11.78726 -11.76016 -11.44151 -11.31439 -11.27886 -11.18326 -11.01637 -10.79420 -10.43208 -10.20581 -9.97391 -9.82133 -9.70464 -9.56201 -9.48086 -8.80405 -8.68855 -8.39759 -6.81537 -5.62752 -3.06121 0.46532 0.74756 1.80832 2.77067 3.37755 3.40047 3.44937 3.48012 3.67030 3.98160 4.32132 4.46301 4.48699 4.80586 4.93194 4.94437 5.20463 5.24552 5.25665 5.37900 5.52071 5.60734 5.68079 5.69379 5.75949 5.79097 5.85414 5.99862 6.08140 6.15529 6.22664 6.35578 6.39855 6.47536 6.58237 6.67552 6.69888 6.94396 7.47289 7.62647 7.83095 7.94722 8.39338 8.56882 9.22116 9.83746 10.47422 11.39833 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009161 B = 0.004211 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.568957 B = 6647.718303 C = 7212.787535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.132 4.132 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.225 4.225 7 H 0.077 0.923 8 C -0.009 4.009 9 N -0.916 5.916 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.146 3.854 15 C 0.124 3.876 16 H 0.088 0.912 17 N -0.693 5.693 18 C 0.556 3.444 19 O -0.521 6.521 20 C -0.148 4.148 21 C -0.048 4.048 22 C -0.057 4.057 23 Cl -0.059 7.059 24 C -0.062 4.062 25 C -0.153 4.153 26 C 0.164 3.836 27 F -0.108 7.108 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.021 0.979 35 H 0.024 0.976 36 H 0.252 0.748 37 H 0.114 0.886 38 H 0.022 0.978 39 H 0.394 0.606 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.880 15.492 5.289 18.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.353 4.353 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.020 3.980 15 C 0.019 3.981 16 H 0.105 0.895 17 N -0.344 5.344 18 C 0.341 3.659 19 O -0.398 6.398 20 C -0.152 4.152 21 C -0.067 4.067 22 C -0.084 4.084 23 Cl -0.030 7.030 24 C -0.081 4.081 25 C -0.172 4.172 26 C 0.143 3.857 27 F -0.086 7.086 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.132 0.868 38 H 0.040 0.960 39 H 0.230 0.770 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.477 14.892 5.810 17.648 hybrid contribution 0.622 -0.663 -0.951 1.316 sum 8.099 14.229 4.859 17.078 Atomic orbital electron populations 1.21680 0.93374 1.02570 1.00933 1.21851 0.96159 0.94514 0.96316 1.21732 1.00209 0.95507 1.01488 1.21415 0.96447 0.86832 0.93625 1.44468 1.74216 1.06673 1.07329 1.19060 1.34170 0.89225 0.92880 0.90510 1.24794 1.01708 0.97642 0.96325 1.69811 1.53568 1.22236 1.10775 0.86055 0.78419 0.82275 0.79065 1.20572 1.21832 1.21747 1.22318 1.00245 0.90317 0.85090 1.22580 0.80682 0.98458 0.96373 0.89450 1.45695 1.15195 1.59536 1.13948 1.17698 0.85326 0.79872 0.83005 1.90845 1.61121 1.40717 1.47109 1.20206 0.96602 1.04343 0.94071 1.21128 0.91839 0.94684 0.99086 1.20754 0.92954 1.02720 0.91938 1.98388 1.71139 1.77490 1.56026 1.21025 1.00434 0.95953 0.90673 1.21094 0.92445 1.02069 1.01637 1.17759 0.89370 0.92805 0.85746 1.91628 1.76270 1.78202 1.62455 0.93020 0.92638 0.91683 0.93124 0.92535 0.92687 0.96116 0.95766 0.93703 0.86822 0.96027 0.76957 0.83683 0.83582 0.83131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.41 37.15 0.31 -1.57 16 2 C -0.09 -1.41 0.81 -152.67 -0.12 -1.53 16 3 C -0.13 -1.66 8.07 37.16 0.30 -1.36 16 4 C 0.14 2.80 6.41 -3.06 -0.02 2.78 16 5 N -0.60 -14.81 3.39 -170.07 -0.58 -15.39 16 6 C -0.23 -6.16 10.27 -15.06 -0.15 -6.32 16 7 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -27.21 10.09 55.49 0.56 -26.65 16 10 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C 0.15 3.56 5.27 -2.53 -0.01 3.55 16 15 C 0.12 2.36 2.56 -65.78 -0.17 2.20 16 16 H 0.09 1.69 7.63 -51.93 -0.40 1.30 16 17 N -0.69 -12.10 4.64 -52.71 -0.24 -12.34 16 18 C 0.56 10.38 7.77 -12.40 -0.10 10.28 16 19 O -0.52 -11.66 15.08 5.30 0.08 -11.58 16 20 C -0.15 -2.24 5.88 -104.92 -0.62 -2.86 16 21 C -0.05 -0.59 9.32 -39.15 -0.36 -0.96 16 22 C -0.06 -0.61 6.31 -39.56 -0.25 -0.86 16 23 Cl -0.06 -0.58 28.95 -51.86 -1.50 -2.08 16 24 C -0.06 -0.57 9.82 -39.48 -0.39 -0.95 16 25 C -0.15 -1.57 10.01 -39.57 -0.40 -1.97 16 26 C 0.16 2.34 7.28 -38.96 -0.28 2.06 16 27 F -0.11 -1.80 15.55 2.25 0.04 -1.77 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.10 7.57 -51.93 -0.39 0.70 16 31 H 0.05 0.60 6.35 -51.93 -0.33 0.27 16 32 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.02 0.40 7.76 -51.93 -0.40 -0.01 16 35 H 0.02 0.48 7.84 -51.93 -0.41 0.08 16 36 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.11 3.26 5.87 -51.93 -0.30 2.96 16 38 H 0.02 0.57 7.80 -51.93 -0.41 0.17 16 39 H 0.39 6.02 4.92 -40.82 -0.20 5.82 16 40 H 0.15 1.62 6.40 -52.49 -0.34 1.29 16 41 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -32.56 359.23 -8.87 -41.43 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.26 Total: 3.61 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -2.36 Total: 2.14 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.26 Total: -54.38 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.56 -8.87 -41.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974812959.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.722 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds