Wall clock time and date at job start Sat Apr 11 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.91589 * 2 1 4 4 C 1.55386 * 111.18815 * 235.94252 * 2 1 3 5 5 N 1.47428 * 104.87146 * 204.97795 * 4 2 1 6 6 C 1.36936 * 125.64667 * 204.16642 * 5 4 2 7 7 H 1.08000 * 120.00366 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99818 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00355 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00021 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47254 * 59.99567 * 10 8 6 12 12 H 1.48501 * 109.47296 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47381 * 299.99823 * 10 8 6 14 14 C 1.47025 * 108.70276 * 24.13591 * 5 4 2 15 15 C 1.54320 * 107.27030 * 358.93752 * 14 5 4 16 16 H 1.09000 * 110.71873 * 219.26828 * 15 14 5 17 17 N 1.46501 * 110.71852 * 96.17528 * 15 14 5 18 18 C 1.34771 * 119.99847 * 88.84107 * 17 15 14 19 19 O 1.21548 * 120.00429 * 359.97438 * 18 17 15 20 20 C 1.47862 * 119.99883 * 179.97438 * 18 17 15 21 21 C 1.39559 * 120.12932 * 180.02562 * 20 18 17 22 22 C 1.38174 * 119.85639 * 179.97438 * 21 20 18 23 23 F 1.35095 * 119.95152 * 180.02562 * 22 21 20 24 24 C 1.38575 * 120.10451 * 359.97438 * 22 21 20 25 25 C 1.38407 * 120.25657 * 0.02562 * 24 22 21 26 26 Cl 1.73595 * 119.92811 * 180.02562 * 25 24 22 27 27 C 1.38112 * 120.14650 * 359.97438 * 25 24 22 28 28 H 1.09003 * 109.47171 * 296.09672 * 1 2 3 29 29 H 1.08993 * 109.47037 * 56.09846 * 1 2 3 30 30 H 1.08999 * 109.46800 * 176.09559 * 1 2 3 31 31 H 1.08996 * 109.47225 * 183.90021 * 3 2 1 32 32 H 1.08998 * 109.47096 * 303.90359 * 3 2 1 33 33 H 1.09011 * 109.46835 * 63.90126 * 3 2 1 34 34 H 1.09001 * 110.34412 * 86.13169 * 4 2 1 35 35 H 1.09001 * 110.44570 * 323.87960 * 4 2 1 36 36 H 0.97001 * 120.00562 * 180.02562 * 9 8 6 37 37 H 1.09006 * 109.87689 * 239.51753 * 14 5 4 38 38 H 1.08999 * 109.88212 * 118.35658 * 14 5 4 39 39 H 0.97004 * 119.99365 * 268.83477 * 17 15 14 40 40 H 1.08001 * 120.07351 * 359.95542 * 21 20 18 41 41 H 1.07998 * 119.87129 * 179.72454 * 24 22 21 42 42 H 1.08002 * 120.05604 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0917 -0.8114 -1.2003 5 7 3.4327 -1.2460 -0.7689 6 6 4.4725 -1.5692 -1.5993 7 1 4.3447 -1.5161 -2.6704 8 6 5.6907 -1.9652 -1.0644 9 7 5.8466 -2.0294 0.2409 10 14 7.1092 -2.4054 -2.1972 11 1 7.4520 -1.2320 -3.0404 12 1 8.2903 -2.7921 -1.3843 13 1 6.7135 -3.5416 -3.0676 14 6 3.4691 -1.2742 0.7007 15 6 2.0862 -0.8079 1.2022 16 1 2.1892 -0.1707 2.0805 17 7 1.2269 -1.9575 1.4962 18 6 1.2428 -2.5143 2.7234 19 8 1.9705 -2.0631 3.5862 20 6 0.3752 -3.6742 3.0203 21 6 0.3891 -4.2526 4.2903 22 6 -0.4244 -5.3360 4.5617 23 9 -0.4128 -5.8970 5.7906 24 6 -1.2530 -5.8473 3.5757 25 6 -1.2705 -5.2772 2.3146 26 17 -2.3123 -5.9241 1.0860 27 6 -0.4616 -4.1940 2.0319 28 1 -0.3634 0.4521 0.9229 29 1 -0.3633 0.5732 -0.8529 30 1 -0.3633 -1.0253 -0.0700 31 1 3.1636 1.4026 -0.0699 32 1 1.6705 1.9732 -0.8529 33 1 1.7836 1.9300 0.9230 34 1 2.1643 -0.1784 -2.0847 35 1 1.4600 -1.6760 -1.4043 36 1 6.6980 -2.3057 0.6147 37 1 4.2429 -0.5985 1.0653 38 1 3.6665 -2.2886 1.0472 39 1 0.6464 -2.3177 0.8075 40 1 1.0346 -3.8545 5.0592 41 1 -1.8840 -6.6969 3.7907 42 1 -0.4761 -3.7505 1.0472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975100418.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:04 Heat of formation + Delta-G solvation = -34.578154 kcal Electronic energy + Delta-G solvation = -27531.934323 eV Core-core repulsion = 23453.055314 eV Total energy + Delta-G solvation = -4078.879009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.24090 -40.39074 -39.00452 -37.76339 -36.70428 -34.02056 -33.20544 -31.50313 -30.80445 -30.68488 -28.11957 -26.89189 -25.66317 -24.64856 -23.28880 -22.93136 -20.83803 -20.02356 -19.15942 -18.17707 -17.01619 -16.72713 -16.60974 -16.23457 -15.99018 -15.68710 -14.97681 -14.89997 -14.42885 -14.09768 -13.95279 -13.82497 -13.69966 -13.46470 -13.26537 -12.64349 -12.47819 -12.13476 -12.02398 -11.90271 -11.71562 -11.59801 -11.45034 -11.40712 -11.11639 -11.01791 -10.77688 -10.45565 -10.32523 -10.05307 -9.91883 -9.79996 -9.66098 -9.38210 -9.10328 -8.66723 -8.54771 -6.85169 -5.70629 -3.05681 0.34398 0.63564 1.62389 2.60161 3.21043 3.40143 3.44564 3.46420 3.54017 3.87206 4.30978 4.48477 4.49235 4.72093 4.73986 4.87584 4.94689 5.21870 5.25233 5.35062 5.51641 5.53023 5.59294 5.65228 5.74729 5.79619 5.87627 5.97159 6.12301 6.14543 6.18736 6.27303 6.33725 6.52195 6.56026 6.62045 6.64199 6.89214 7.50859 7.59042 7.72238 7.83863 8.23651 8.38797 9.20382 9.81137 10.46001 11.40053 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011114 B = 0.003330 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.648308 B = 8407.537006 C = 8786.057878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.126 4.126 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.232 4.232 7 H 0.077 0.923 8 C -0.005 4.005 9 N -0.919 5.919 10 Si 0.911 3.089 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.175 3.825 15 C 0.122 3.878 16 H 0.091 0.909 17 N -0.699 5.699 18 C 0.556 3.444 19 O -0.526 6.526 20 C -0.080 4.080 21 C -0.092 4.092 22 C 0.108 3.892 23 F -0.129 7.129 24 C -0.129 4.129 25 C -0.014 4.014 26 Cl -0.051 7.051 27 C -0.089 4.089 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.015 0.985 36 H 0.254 0.746 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.395 0.605 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.084 -3.278 4.733 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 C -0.183 4.183 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.360 4.360 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.050 3.950 15 C 0.018 3.982 16 H 0.109 0.891 17 N -0.350 5.350 18 C 0.341 3.659 19 O -0.403 6.403 20 C -0.083 4.083 21 C -0.112 4.112 22 C 0.088 3.912 23 F -0.107 7.107 24 C -0.149 4.149 25 C -0.041 4.041 26 Cl -0.022 7.022 27 C -0.108 4.108 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.032 0.968 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.232 0.768 40 H 0.175 0.825 41 H 0.167 0.833 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.388 -3.084 5.296 18.437 hybrid contribution 0.444 -0.796 -0.846 1.243 sum -16.944 -3.880 4.450 17.944 Atomic orbital electron populations 1.21680 0.94678 1.01006 1.01550 1.22110 0.94433 0.96127 0.96482 1.21594 1.02568 0.93576 1.00597 1.21715 0.87782 0.94481 0.94310 1.44419 1.07609 1.79072 1.01768 1.18971 0.89329 1.38812 0.88911 0.90505 1.24798 0.97807 1.01646 0.95930 1.69936 1.24417 1.53147 1.09071 0.86229 0.81990 0.78239 0.79442 1.21173 1.21619 1.21238 1.21535 0.89443 1.00575 0.83460 1.22584 0.92357 0.85886 0.97368 0.89076 1.45943 1.43887 1.33162 1.12000 1.17861 0.82313 0.82668 0.83045 1.90808 1.40569 1.62569 1.46402 1.19865 0.97636 0.97334 0.93486 1.21371 0.98021 0.94048 0.97770 1.17249 0.98546 0.94481 0.80881 1.91551 1.95443 1.84040 1.39675 1.21110 1.00542 1.01856 0.91374 1.20424 0.96544 0.96757 0.90396 1.98403 1.65078 1.85564 1.53148 1.21311 0.94500 0.94947 1.00069 0.92719 0.92471 0.93229 0.91128 0.92805 0.93276 0.94017 0.96750 0.93590 0.92630 0.93304 0.76835 0.82509 0.83252 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.23 37.16 0.31 -1.27 16 2 C -0.09 -1.41 0.84 -152.10 -0.13 -1.54 16 3 C -0.13 -1.91 8.58 37.16 0.32 -1.59 16 4 C 0.14 2.72 6.16 -2.27 -0.01 2.70 16 5 N -0.60 -14.58 3.38 -169.76 -0.57 -15.15 16 6 C -0.23 -6.28 10.28 -15.06 -0.15 -6.44 16 7 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 8 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 9 N -0.92 -27.00 10.31 55.49 0.57 -26.42 16 10 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 14 C 0.18 4.17 4.80 -3.06 -0.01 4.15 16 15 C 0.12 2.22 2.54 -66.10 -0.17 2.05 16 16 H 0.09 1.71 7.53 -51.93 -0.39 1.32 16 17 N -0.70 -10.97 4.46 -52.97 -0.24 -11.21 16 18 C 0.56 9.12 7.77 -12.32 -0.10 9.02 16 19 O -0.53 -10.52 16.03 5.32 0.09 -10.43 16 20 C -0.08 -1.04 5.87 -104.98 -0.62 -1.66 16 21 C -0.09 -1.14 9.57 -39.11 -0.37 -1.51 16 22 C 0.11 1.17 7.29 -39.48 -0.29 0.88 16 23 F -0.13 -1.42 17.26 2.25 0.04 -1.38 16 24 C -0.13 -1.22 9.80 -39.40 -0.39 -1.61 16 25 C -0.01 -0.14 6.31 -39.57 -0.25 -0.39 16 26 Cl -0.05 -0.46 28.95 -51.86 -1.50 -1.96 16 27 C -0.09 -0.97 9.32 -39.14 -0.36 -1.33 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.54 6.44 -51.93 -0.33 0.20 16 31 H 0.07 1.28 7.91 -51.93 -0.41 0.87 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 35 H 0.01 0.27 8.00 -51.93 -0.42 -0.15 16 36 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.06 1.50 7.38 -51.93 -0.38 1.12 16 38 H 0.05 1.34 7.41 -51.93 -0.38 0.96 16 39 H 0.40 5.28 5.05 -40.82 -0.21 5.07 16 40 H 0.16 1.96 7.65 -52.49 -0.40 1.56 16 41 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.14 1.37 6.40 -52.49 -0.34 1.03 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -31.00 362.72 -8.84 -39.84 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.34 Total: 3.06 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.32 Total: 1.24 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.24 Total: -52.78 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.50 Total: -1.96 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.00 -8.84 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975100418.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.261 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds