Wall clock time and date at job start Sat Apr 11 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.77716 * 2 1 4 4 C 1.54324 * 110.71878 * 236.76409 * 2 1 3 5 5 N 1.47023 * 107.26794 * 263.82303 * 4 2 1 6 6 C 1.36938 * 125.65064 * 181.09643 * 5 4 2 7 7 H 1.08002 * 119.99794 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.00450 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99636 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00260 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46947 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47359 * 119.99726 * 10 8 6 13 13 H 1.48504 * 109.46779 * 239.99825 * 10 8 6 14 14 C 1.47426 * 108.70406 * 1.06607 * 5 4 2 15 15 C 1.54913 * 104.83169 * 335.86639 * 14 5 4 16 16 H 1.09000 * 111.00402 * 155.11771 * 15 14 5 17 17 N 1.46497 * 111.00273 * 278.93855 * 15 14 5 18 18 C 1.34780 * 119.99581 * 273.54306 * 17 15 14 19 19 O 1.21557 * 120.00182 * 0.02562 * 18 17 15 20 20 C 1.47777 * 119.99442 * 180.02562 * 18 17 15 21 21 C 1.39605 * 120.14735 * 359.97438 * 20 18 17 22 22 C 1.38121 * 119.84134 * 180.02562 * 21 20 18 23 23 F 1.35101 * 119.93711 * 180.02562 * 22 21 20 24 24 C 1.38631 * 120.12893 * 0.02562 * 22 21 20 25 25 C 1.38245 * 120.28894 * 359.97438 * 24 22 21 26 26 C 1.38155 * 120.15904 * 0.02562 * 25 24 22 27 27 Cl 1.73599 * 120.06404 * 180.02562 * 26 25 24 28 28 H 1.08999 * 109.47732 * 296.76252 * 1 2 3 29 29 H 1.09006 * 109.47161 * 56.76710 * 1 2 3 30 30 H 1.09007 * 109.46913 * 176.75606 * 1 2 3 31 31 H 1.08993 * 109.47266 * 183.24045 * 3 2 1 32 32 H 1.09005 * 109.46989 * 303.24069 * 3 2 1 33 33 H 1.09001 * 109.47479 * 63.23597 * 3 2 1 34 34 H 1.09003 * 109.87840 * 144.41303 * 4 2 1 35 35 H 1.08992 * 109.88905 * 23.24416 * 4 2 1 36 36 H 0.97006 * 119.99652 * 179.97438 * 9 8 6 37 37 H 1.09002 * 110.36796 * 217.03187 * 14 5 4 38 38 H 1.09000 * 110.37045 * 94.70707 * 14 5 4 39 39 H 0.96996 * 120.00281 * 93.54631 * 17 15 14 40 40 H 1.08000 * 120.08292 * 0.04090 * 21 20 18 41 41 H 1.07991 * 119.85474 * 179.97438 * 24 22 21 42 42 H 1.07998 * 119.91210 * 180.28279 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 -1.2073 5 7 2.3717 -2.1531 -0.7390 6 6 2.8946 -3.1633 -1.5014 7 1 3.1251 -2.9904 -2.5423 8 6 3.1285 -4.4094 -0.9365 9 7 2.8480 -4.6200 0.3321 10 14 3.8425 -5.7873 -1.9763 11 1 4.0678 -5.2973 -3.3600 12 1 5.1333 -6.2308 -1.3915 13 1 2.8933 -6.9290 -2.0043 14 6 2.0127 -2.2509 0.6875 15 6 2.0790 -0.7954 1.2138 16 1 1.4400 -0.6663 2.0874 17 7 3.4595 -0.4081 1.5144 18 6 3.9887 -0.6839 2.7229 19 8 3.3207 -1.2542 3.5632 20 6 5.3811 -0.2927 3.0263 21 6 6.1511 0.3620 2.0633 22 6 7.4520 0.7242 2.3535 23 9 8.1988 1.3584 1.4232 24 6 7.9930 0.4384 3.5975 25 6 7.2352 -0.2097 4.5551 26 6 5.9328 -0.5775 4.2776 27 17 4.9833 -1.3906 5.4821 28 1 -0.3634 0.4627 0.9175 29 1 -0.3634 0.5632 -0.8596 30 1 -0.3633 -1.0261 -0.0582 31 1 3.1609 1.4063 -0.0581 32 1 1.6749 1.9700 -0.8596 33 1 1.7690 1.9344 0.9176 34 1 2.9868 -0.3205 -1.5776 35 1 1.3264 -0.8255 -1.9978 36 1 3.0111 -5.4910 0.7268 37 1 2.7294 -2.8787 1.2169 38 1 1.0040 -2.6488 0.7985 39 1 3.9926 0.0467 0.8438 40 1 5.7306 0.5849 1.0939 41 1 9.0107 0.7233 3.8195 42 1 7.6613 -0.4253 5.5238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975106167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:06 Heat of formation + Delta-G solvation = -23.594330 kcal Electronic energy + Delta-G solvation = -28092.457266 eV Core-core repulsion = 24014.054551 eV Total energy + Delta-G solvation = -4078.402715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.12699 -40.21039 -38.89985 -37.49654 -36.29403 -33.88483 -33.19809 -31.54934 -30.69571 -30.36602 -28.12750 -26.86156 -25.62345 -24.49636 -23.37068 -22.63194 -20.81274 -19.86880 -19.03888 -17.99242 -16.97446 -16.73354 -16.67379 -16.05306 -15.86899 -15.58481 -14.78289 -14.56832 -14.34604 -13.94646 -13.87936 -13.68412 -13.55849 -13.24121 -12.98368 -12.75208 -12.53156 -12.17248 -11.93503 -11.79967 -11.75718 -11.32201 -11.26754 -11.18269 -11.04454 -11.00530 -10.79129 -10.39747 -10.19327 -9.94772 -9.79796 -9.69715 -9.44413 -9.24252 -8.75157 -8.67529 -8.35986 -6.80821 -5.62267 -3.05514 0.48419 0.77235 2.14136 2.80533 3.39520 3.40829 3.45202 3.48150 3.71528 3.92020 4.35237 4.47563 4.49058 4.83495 4.94377 4.95463 5.21193 5.26156 5.30444 5.40802 5.52534 5.61426 5.61905 5.71471 5.77196 5.83475 5.85904 6.00637 6.08808 6.16352 6.23508 6.37164 6.40091 6.47886 6.59152 6.68542 6.71489 6.95869 7.48592 7.63274 7.85347 7.96770 8.40222 8.60621 9.22736 9.84272 10.47991 11.40164 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009338 B = 0.004358 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.871688 B = 6423.286169 C = 7020.973341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.225 4.225 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.915 5.915 10 Si 0.911 3.089 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.146 3.854 15 C 0.126 3.874 16 H 0.088 0.912 17 N -0.695 5.695 18 C 0.551 3.449 19 O -0.509 6.509 20 C -0.087 4.087 21 C -0.110 4.110 22 C 0.096 3.904 23 F -0.133 7.133 24 C -0.124 4.124 25 C -0.093 4.093 26 C 0.000 4.000 27 Cl -0.021 7.021 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.020 0.980 35 H 0.024 0.976 36 H 0.252 0.748 37 H 0.115 0.885 38 H 0.021 0.979 39 H 0.393 0.607 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.542 14.372 6.944 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.089 4.089 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.354 4.354 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.563 5.563 10 Si 0.741 3.259 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.021 3.979 15 C 0.020 3.980 16 H 0.106 0.894 17 N -0.346 5.346 18 C 0.335 3.665 19 O -0.385 6.385 20 C -0.091 4.091 21 C -0.130 4.130 22 C 0.076 3.924 23 F -0.112 7.112 24 C -0.144 4.144 25 C -0.112 4.112 26 C -0.028 4.028 27 Cl 0.009 6.991 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.132 0.868 38 H 0.039 0.961 39 H 0.229 0.771 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.023 13.670 7.618 16.768 hybrid contribution 0.766 -0.542 -1.140 1.477 sum 6.789 13.128 6.478 16.136 Atomic orbital electron populations 1.21682 0.93404 1.02548 1.00910 1.21849 0.96131 0.94501 0.96382 1.21728 1.00195 0.95532 1.01460 1.21411 0.96417 0.86857 0.93638 1.44467 1.74198 1.06656 1.07367 1.19056 1.34175 0.89243 0.92876 0.90557 1.24788 1.01704 0.97618 0.96334 1.69812 1.53545 1.22204 1.10728 0.86062 0.78429 0.82297 0.79074 1.20598 1.21832 1.21760 1.22320 1.00206 0.90370 0.85054 1.22554 0.80731 0.98362 0.96304 0.89436 1.45730 1.15157 1.59619 1.14049 1.17777 0.85514 0.80147 0.83013 1.90871 1.60957 1.40063 1.46646 1.19818 0.95939 1.00319 0.93024 1.21295 0.92767 0.98693 1.00241 1.17526 0.89756 0.97690 0.87400 1.91537 1.75844 1.79418 1.64371 1.21226 1.01333 0.99967 0.91825 1.20907 0.91686 0.98158 1.00434 1.21068 0.92835 0.97891 0.91053 1.98433 1.71408 1.76298 1.52955 0.93024 0.92681 0.91698 0.93153 0.92587 0.92689 0.96170 0.95808 0.93726 0.86761 0.96099 0.77066 0.83576 0.83539 0.83402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.41 37.16 0.31 -1.57 16 2 C -0.09 -1.41 0.81 -152.67 -0.12 -1.53 16 3 C -0.13 -1.66 8.07 37.16 0.30 -1.36 16 4 C 0.14 2.80 6.41 -3.06 -0.02 2.78 16 5 N -0.60 -14.78 3.39 -170.07 -0.58 -15.36 16 6 C -0.23 -6.16 10.27 -15.06 -0.15 -6.32 16 7 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 9 N -0.91 -27.01 10.09 55.49 0.56 -26.45 16 10 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C 0.15 3.53 5.27 -2.53 -0.01 3.52 16 15 C 0.13 2.36 2.56 -65.78 -0.17 2.19 16 16 H 0.09 1.66 7.63 -51.93 -0.40 1.27 16 17 N -0.69 -11.94 4.64 -52.69 -0.24 -12.19 16 18 C 0.55 9.92 7.76 -12.36 -0.10 9.83 16 19 O -0.51 -10.64 13.71 5.32 0.07 -10.56 16 20 C -0.09 -1.30 5.88 -104.95 -0.62 -1.91 16 21 C -0.11 -1.40 9.52 -39.11 -0.37 -1.77 16 22 C 0.10 1.09 7.29 -39.48 -0.29 0.80 16 23 F -0.13 -1.54 17.26 2.25 0.04 -1.50 16 24 C -0.12 -1.18 10.02 -39.43 -0.39 -1.58 16 25 C -0.09 -0.96 9.82 -39.61 -0.39 -1.35 16 26 C 0.00 0.00 6.35 -39.07 -0.25 -0.25 16 27 Cl -0.02 -0.31 26.02 -51.86 -1.35 -1.66 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.09 7.57 -51.93 -0.39 0.70 16 31 H 0.05 0.61 6.35 -51.93 -0.33 0.28 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.02 0.39 7.76 -51.93 -0.40 -0.01 16 35 H 0.02 0.48 7.84 -51.93 -0.41 0.07 16 36 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.11 3.24 5.87 -51.93 -0.30 2.94 16 38 H 0.02 0.55 7.80 -51.93 -0.41 0.14 16 39 H 0.39 6.00 4.92 -40.82 -0.20 5.80 16 40 H 0.15 1.67 6.41 -52.49 -0.34 1.33 16 41 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -31.71 356.88 -8.77 -40.48 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.26 Total: 3.51 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.37 Total: 1.15 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.26 Total: -53.99 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.35 Total: -1.66 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.71 -8.77 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975106167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.887 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds