Wall clock time and date at job start Sat Apr 11 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.77716 * 2 1 4 4 C 1.54324 * 110.71878 * 236.76409 * 2 1 3 5 5 N 1.47023 * 107.26794 * 263.82303 * 4 2 1 6 6 C 1.36938 * 125.65064 * 181.09643 * 5 4 2 7 7 H 1.08002 * 119.99794 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.00450 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99636 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00260 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46947 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47359 * 119.99726 * 10 8 6 13 13 H 1.48504 * 109.46779 * 239.99825 * 10 8 6 14 14 C 1.47426 * 108.70406 * 1.06607 * 5 4 2 15 15 C 1.54913 * 104.83169 * 335.86639 * 14 5 4 16 16 H 1.09000 * 111.00402 * 155.11771 * 15 14 5 17 17 N 1.46497 * 111.00273 * 278.93855 * 15 14 5 18 18 C 1.34780 * 119.99581 * 273.54306 * 17 15 14 19 19 O 1.21557 * 120.00182 * 0.02562 * 18 17 15 20 20 C 1.47777 * 119.99442 * 180.02562 * 18 17 15 21 21 C 1.39605 * 120.14735 * 359.97438 * 20 18 17 22 22 C 1.38121 * 119.84134 * 180.02562 * 21 20 18 23 23 F 1.35101 * 119.93711 * 180.02562 * 22 21 20 24 24 C 1.38631 * 120.12893 * 0.02562 * 22 21 20 25 25 C 1.38245 * 120.28894 * 359.97438 * 24 22 21 26 26 C 1.38155 * 120.15904 * 0.02562 * 25 24 22 27 27 Cl 1.73599 * 120.06404 * 180.02562 * 26 25 24 28 28 H 1.08999 * 109.47732 * 296.76252 * 1 2 3 29 29 H 1.09006 * 109.47161 * 56.76710 * 1 2 3 30 30 H 1.09007 * 109.46913 * 176.75606 * 1 2 3 31 31 H 1.08993 * 109.47266 * 183.24045 * 3 2 1 32 32 H 1.09005 * 109.46989 * 303.24069 * 3 2 1 33 33 H 1.09001 * 109.47479 * 63.23597 * 3 2 1 34 34 H 1.09003 * 109.87840 * 144.41303 * 4 2 1 35 35 H 1.08992 * 109.88905 * 23.24416 * 4 2 1 36 36 H 0.97006 * 119.99652 * 179.97438 * 9 8 6 37 37 H 1.09002 * 110.36796 * 217.03187 * 14 5 4 38 38 H 1.09000 * 110.37045 * 94.70707 * 14 5 4 39 39 H 0.96996 * 120.00281 * 93.54631 * 17 15 14 40 40 H 1.08000 * 120.08292 * 0.04090 * 21 20 18 41 41 H 1.07991 * 119.85474 * 179.97438 * 24 22 21 42 42 H 1.07998 * 119.91210 * 180.28279 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 -1.2073 5 7 2.3717 -2.1531 -0.7390 6 6 2.8946 -3.1633 -1.5014 7 1 3.1251 -2.9904 -2.5423 8 6 3.1285 -4.4094 -0.9365 9 7 2.8480 -4.6200 0.3321 10 14 3.8425 -5.7873 -1.9763 11 1 4.0678 -5.2973 -3.3600 12 1 5.1333 -6.2308 -1.3915 13 1 2.8933 -6.9290 -2.0043 14 6 2.0127 -2.2509 0.6875 15 6 2.0790 -0.7954 1.2138 16 1 1.4400 -0.6663 2.0874 17 7 3.4595 -0.4081 1.5144 18 6 3.9887 -0.6839 2.7229 19 8 3.3207 -1.2542 3.5632 20 6 5.3811 -0.2927 3.0263 21 6 6.1511 0.3620 2.0633 22 6 7.4520 0.7242 2.3535 23 9 8.1988 1.3584 1.4232 24 6 7.9930 0.4384 3.5975 25 6 7.2352 -0.2097 4.5551 26 6 5.9328 -0.5775 4.2776 27 17 4.9833 -1.3906 5.4821 28 1 -0.3634 0.4627 0.9175 29 1 -0.3634 0.5632 -0.8596 30 1 -0.3633 -1.0261 -0.0582 31 1 3.1609 1.4063 -0.0581 32 1 1.6749 1.9700 -0.8596 33 1 1.7690 1.9344 0.9176 34 1 2.9868 -0.3205 -1.5776 35 1 1.3264 -0.8255 -1.9978 36 1 3.0111 -5.4910 0.7268 37 1 2.7294 -2.8787 1.2169 38 1 1.0040 -2.6488 0.7985 39 1 3.9926 0.0467 0.8438 40 1 5.7306 0.5849 1.0939 41 1 9.0107 0.7233 3.8195 42 1 7.6613 -0.4253 5.5238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975106167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:06 Heat of formation + Delta-G solvation = -42.456467 kcal Electronic energy + Delta-G solvation = -28093.275190 eV Core-core repulsion = 24014.054551 eV Total energy + Delta-G solvation = -4079.220639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.02052 -41.51972 -40.16722 -38.85199 -37.37081 -35.69427 -34.64758 -32.62714 -32.55740 -31.32118 -29.74855 -28.06084 -27.41702 -25.76963 -24.75010 -23.72084 -22.37329 -21.42162 -20.37063 -19.20433 -18.70761 -17.99551 -17.67224 -17.29965 -16.92587 -16.78941 -16.55708 -15.90065 -15.69641 -15.51019 -15.31601 -14.85751 -14.67342 -14.51986 -14.27979 -13.94015 -13.68934 -13.67286 -13.54538 -13.03909 -13.02090 -12.87357 -12.70478 -12.64152 -12.54606 -12.30284 -12.22575 -12.06710 -11.78019 -11.73314 -11.42690 -11.34752 -10.80361 -10.58109 -10.39619 -9.96252 -9.68644 -8.83912 -7.74982 -5.20077 -0.51521 -0.14407 1.10194 1.43619 1.44228 1.54551 1.70628 2.11395 2.48239 2.52259 2.98664 3.34285 3.44158 3.50650 3.60428 3.70093 3.89100 3.96966 4.01901 4.07453 4.29632 4.41027 4.52843 4.53614 4.71524 4.76202 4.84073 4.85371 4.87628 4.92329 4.96342 5.04078 5.10700 5.20417 5.29671 5.33898 5.48702 5.51866 5.53432 5.69019 5.85108 6.33000 6.54874 7.10071 7.23721 7.80026 8.43406 9.25136 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009338 B = 0.004358 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.871688 B = 6423.286169 C = 7020.973341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 C -0.125 4.125 4 C 0.137 3.863 5 N -0.618 5.618 6 C -0.230 4.230 7 H 0.084 0.916 8 C -0.068 4.068 9 N -0.946 5.946 10 Si 0.974 3.026 11 H -0.263 1.263 12 H -0.296 1.296 13 H -0.296 1.296 14 C 0.155 3.845 15 C 0.138 3.862 16 H 0.083 0.917 17 N -0.689 5.689 18 C 0.544 3.456 19 O -0.548 6.548 20 C -0.113 4.113 21 C -0.111 4.111 22 C 0.094 3.906 23 F -0.132 7.132 24 C -0.101 4.101 25 C -0.082 4.082 26 C -0.015 4.015 27 Cl -0.043 7.043 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.026 0.974 36 H 0.242 0.758 37 H 0.070 0.930 38 H -0.015 1.015 39 H 0.404 0.596 40 H 0.154 0.846 41 H 0.187 0.813 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.621 17.102 6.132 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.075 4.075 3 C -0.183 4.183 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.359 4.359 7 H 0.102 0.898 8 C -0.261 4.261 9 N -0.596 5.596 10 Si 0.803 3.197 11 H -0.187 1.187 12 H -0.223 1.223 13 H -0.223 1.223 14 C 0.029 3.971 15 C 0.032 3.968 16 H 0.101 0.899 17 N -0.340 5.340 18 C 0.331 3.669 19 O -0.427 6.427 20 C -0.117 4.117 21 C -0.131 4.131 22 C 0.074 3.926 23 F -0.110 7.110 24 C -0.120 4.120 25 C -0.101 4.101 26 C -0.044 4.044 27 Cl -0.014 7.014 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.003 0.997 39 H 0.242 0.758 40 H 0.171 0.829 41 H 0.205 0.795 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 8.115 16.458 6.761 19.555 hybrid contribution 0.172 -1.350 -0.914 1.640 sum 8.287 15.107 5.847 18.196 Atomic orbital electron populations 1.21685 0.92299 1.01251 1.03084 1.21835 0.96973 0.95943 0.92724 1.21704 1.00612 0.92685 1.03270 1.21654 0.97101 0.84829 0.95143 1.44689 1.73908 1.08234 1.07509 1.19453 1.33018 0.90055 0.93419 0.89844 1.25601 1.02975 1.00101 0.97395 1.70126 1.55231 1.21879 1.12404 0.85065 0.77031 0.79210 0.78393 1.18678 1.22324 1.22330 1.21945 0.96739 0.93277 0.85187 1.22204 0.81993 0.95458 0.97110 0.89909 1.45625 1.14632 1.59418 1.14343 1.18354 0.86727 0.79196 0.82606 1.90842 1.62308 1.41758 1.47757 1.19591 0.94574 1.02997 0.94530 1.21329 0.93406 0.98335 1.00019 1.17617 0.89246 0.97592 0.88131 1.91548 1.75605 1.79363 1.64512 1.21661 1.02653 0.97407 0.90246 1.21259 0.89977 0.96874 1.01969 1.21348 0.94073 0.98587 0.90348 1.98422 1.72358 1.76927 1.53683 0.91144 0.90148 0.94803 0.92473 0.90255 0.91340 0.94777 0.95612 0.94853 0.91205 0.99692 0.75821 0.82864 0.79537 0.80236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 8.41 71.98 0.61 -2.93 16 2 C -0.07 -2.28 0.81 -50.99 -0.04 -2.32 16 3 C -0.13 -2.75 8.07 71.98 0.58 -2.17 16 4 C 0.14 5.27 6.41 86.73 0.56 5.82 16 5 N -0.62 -31.11 3.39 -691.98 -2.35 -33.46 16 6 C -0.23 -12.82 10.27 84.03 0.86 -11.96 16 7 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 8 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 9 N -0.95 -58.88 10.09 21.65 0.22 -58.66 16 10 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 13 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 14 C 0.15 7.91 5.27 86.86 0.46 8.37 16 15 C 0.14 5.31 2.56 46.38 0.12 5.43 16 16 H 0.08 3.26 7.63 -2.39 -0.02 3.25 16 17 N -0.69 -23.91 4.64 -438.89 -2.04 -25.95 16 18 C 0.54 20.20 7.76 86.77 0.67 20.88 16 19 O -0.55 -24.12 13.71 -3.89 -0.05 -24.18 16 20 C -0.11 -3.35 5.88 -20.08 -0.12 -3.46 16 21 C -0.11 -2.65 9.52 22.57 0.21 -2.43 16 22 C 0.09 1.85 7.29 22.34 0.16 2.01 16 23 F -0.13 -2.63 17.26 44.97 0.78 -1.85 16 24 C -0.10 -1.51 10.02 22.37 0.22 -1.29 16 25 C -0.08 -1.45 9.82 22.25 0.22 -1.23 16 26 C -0.02 -0.41 6.35 22.60 0.14 -0.27 16 27 Cl -0.04 -1.34 26.02 -2.72 -0.07 -1.41 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.03 1.15 7.57 -2.38 -0.02 1.13 16 31 H 0.06 1.19 6.35 -2.39 -0.02 1.17 16 32 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.03 1.23 7.76 -2.39 -0.02 1.21 16 35 H 0.03 0.99 7.84 -2.39 -0.02 0.97 16 36 H 0.24 14.84 8.31 -92.70 -0.77 14.07 16 37 H 0.07 4.24 5.87 -2.39 -0.01 4.23 16 38 H -0.01 -0.83 7.80 -2.39 -0.02 -0.85 16 39 H 0.40 12.01 4.92 -92.71 -0.46 11.55 16 40 H 0.15 3.27 6.41 -2.91 -0.02 3.25 16 41 H 0.19 1.36 8.06 -2.92 -0.02 1.33 16 42 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -74.21 356.88 4.24 -69.96 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.61 Total: 15.80 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 5.13 Total: 10.98 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -4.17 Total: -118.07 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.05 Total: -24.18 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.07 Total: -1.41 kcal Total: -74.21 4.24 -69.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975106167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.505 kcal (2) G-P(sol) polarization free energy of solvation -74.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds