Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.91345 * 2 1 4 4 C 1.54909 * 111.00746 * 236.09922 * 2 1 3 5 5 N 1.47427 * 104.83261 * 278.93662 * 4 2 1 6 6 C 1.36936 * 125.65202 * 155.91358 * 5 4 2 7 7 H 1.08002 * 119.99334 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99996 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00284 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99672 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46856 * 90.00343 * 10 8 6 12 12 H 1.48495 * 109.47184 * 210.00066 * 10 8 6 13 13 H 1.48498 * 109.47568 * 330.00275 * 10 8 6 14 14 C 1.47022 * 108.70050 * 335.87352 * 5 4 2 15 15 C 1.54320 * 107.27418 * 1.05533 * 14 5 4 16 16 H 1.09001 * 110.87157 * 140.63152 * 15 14 5 17 17 N 1.46500 * 110.72369 * 263.83495 * 15 14 5 18 18 C 1.34772 * 120.00215 * 268.52162 * 17 15 14 19 19 O 1.21584 * 120.00113 * 359.97438 * 18 17 15 20 20 C 1.47622 * 120.00464 * 179.97438 * 18 17 15 21 21 C 1.39880 * 120.17373 * 270.00198 * 20 18 17 22 22 F 1.35102 * 120.10760 * 359.97438 * 21 20 18 23 23 C 1.38252 * 119.79125 * 180.02562 * 21 20 18 24 24 C 1.38283 * 120.15042 * 0.27630 * 23 21 20 25 25 C 1.38348 * 120.36692 * 359.44697 * 24 23 21 26 26 C 1.38078 * 120.19671 * 0.55201 * 25 24 23 27 27 Cl 1.73600 * 120.07368 * 179.70789 * 26 25 24 28 28 H 1.08997 * 109.46882 * 296.09666 * 1 2 3 29 29 H 1.08999 * 109.46892 * 56.09687 * 1 2 3 30 30 H 1.09003 * 109.46981 * 176.09805 * 1 2 3 31 31 H 1.09000 * 109.47134 * 183.89934 * 3 2 1 32 32 H 1.09000 * 109.47519 * 303.90379 * 3 2 1 33 33 H 1.09001 * 109.47260 * 63.90135 * 3 2 1 34 34 H 1.09005 * 110.36325 * 37.77293 * 4 2 1 35 35 H 1.08994 * 110.36857 * 159.98841 * 4 2 1 36 36 H 0.97001 * 120.00207 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.87803 * 241.64155 * 14 5 4 38 38 H 1.08992 * 109.88661 * 120.47881 * 14 5 4 39 39 H 0.97002 * 119.99854 * 88.52174 * 17 15 14 40 40 H 1.08002 * 119.92071 * 179.97438 * 23 21 20 41 41 H 1.08005 * 119.81321 * 179.69994 * 24 23 21 42 42 H 1.07997 * 119.90323 * 180.27678 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 2.0140 -2.2159 -0.7734 6 6 1.9463 -3.3000 -1.6072 7 1 1.9426 -3.1582 -2.6778 8 6 1.8836 -4.5810 -1.0763 9 7 1.8886 -4.7537 0.2284 10 14 1.7920 -6.0599 -2.2139 11 1 3.1657 -6.5266 -2.5305 12 1 1.0397 -7.1523 -1.5460 13 1 1.0978 -5.6765 -3.4694 14 6 2.0285 -2.2646 0.6960 15 6 2.0862 -0.8080 1.2022 16 1 1.4541 -0.6768 2.0805 17 7 3.4667 -0.4156 1.4963 18 6 3.9655 -0.5840 2.7369 19 8 3.2696 -1.0612 3.6123 20 6 5.3567 -0.1892 3.0331 21 6 6.3982 -1.1089 2.8714 22 9 6.1345 -2.3630 2.4437 23 6 7.6981 -0.7308 3.1516 24 6 7.9684 0.5506 3.5958 25 6 6.9440 1.4671 3.7526 26 6 5.6402 1.1053 3.4770 27 17 4.3563 2.2556 3.6821 28 1 -0.3633 0.4520 0.9229 29 1 -0.3633 0.5732 -0.8529 30 1 -0.3633 -1.0253 -0.0699 31 1 3.1636 1.4026 -0.0699 32 1 1.6705 1.9733 -0.8529 33 1 1.7836 1.9300 0.9229 34 1 1.4673 -0.6460 -2.0837 35 1 3.1177 -0.5219 -1.4036 36 1 1.8451 -5.6489 0.5994 37 1 2.9064 -2.8116 1.0400 38 1 1.1219 -2.7479 1.0599 39 1 4.0217 -0.0345 0.7980 40 1 8.5038 -1.4393 3.0279 41 1 8.9854 0.8386 3.8178 42 1 7.1641 2.4671 4.0957 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977528178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -32.899057 kcal Electronic energy + Delta-G solvation = -28270.883569 eV Core-core repulsion = 24192.077371 eV Total energy + Delta-G solvation = -4078.806198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.01377 -40.14744 -38.99543 -37.64851 -36.72120 -33.86068 -33.04171 -31.49602 -30.77616 -30.65873 -28.05847 -26.80269 -25.60764 -24.47247 -23.12754 -23.01873 -20.78402 -19.97734 -18.92912 -18.05858 -17.28422 -16.94960 -16.66516 -16.10378 -15.51998 -15.46935 -15.00810 -14.65742 -14.13512 -14.02706 -13.90142 -13.80427 -13.47489 -13.38731 -13.18716 -12.55561 -12.42799 -12.06864 -11.95367 -11.83359 -11.65639 -11.63465 -11.34829 -11.27323 -11.05221 -10.96551 -10.75030 -10.39970 -10.25568 -10.00901 -9.85331 -9.72942 -9.60953 -9.23868 -9.02249 -8.61022 -8.46775 -6.79449 -5.65420 -3.00358 0.55091 0.69978 1.72512 2.75363 3.01634 3.38998 3.42981 3.47472 3.50092 3.94910 4.38700 4.52949 4.64872 4.66292 4.81324 4.95964 5.08664 5.29942 5.33371 5.50667 5.57148 5.61843 5.63644 5.68054 5.81660 5.83080 5.95150 6.04812 6.18300 6.21649 6.26727 6.33628 6.40374 6.59385 6.63298 6.68908 6.71394 6.96164 7.56992 7.65630 7.79995 7.90319 8.29051 8.46505 9.25440 9.86344 10.51696 11.45306 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012972 B = 0.004218 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.918753 B = 6637.224321 C = 8079.283444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.130 4.130 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.230 4.230 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.175 3.825 15 C 0.123 3.877 16 H 0.091 0.909 17 N -0.693 5.693 18 C 0.563 3.437 19 O -0.519 6.519 20 C -0.149 4.149 21 C 0.150 3.850 22 F -0.113 7.113 23 C -0.153 4.153 24 C -0.067 4.067 25 C -0.127 4.127 26 C 0.018 3.982 27 Cl -0.043 7.043 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.014 0.986 36 H 0.253 0.747 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.397 0.603 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.836 16.652 5.948 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.188 4.188 4 C 0.018 3.982 5 N -0.328 5.328 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.565 5.565 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.050 3.950 15 C 0.019 3.981 16 H 0.109 0.891 17 N -0.342 5.342 18 C 0.346 3.654 19 O -0.395 6.395 20 C -0.154 4.154 21 C 0.129 3.871 22 F -0.092 7.092 23 C -0.172 4.172 24 C -0.085 4.085 25 C -0.145 4.145 26 C -0.009 4.009 27 Cl -0.013 7.013 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.232 0.768 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.140 16.096 6.590 20.133 hybrid contribution 0.207 -0.894 -0.946 1.318 sum 10.347 15.202 5.643 19.235 Atomic orbital electron populations 1.21594 0.93199 1.02965 1.00523 1.22019 0.96401 0.94144 0.96488 1.21665 1.00207 0.95547 1.01341 1.21625 0.96510 0.85778 0.94335 1.44427 1.86936 0.99703 1.01775 1.19009 1.44003 0.83974 0.88867 0.90495 1.24800 1.02189 0.97348 0.95915 1.69956 1.56555 1.20815 1.09157 0.86155 0.77491 0.82785 0.79520 1.21705 1.21711 1.20742 1.21528 1.01747 0.88332 0.83434 1.22573 0.80508 0.97735 0.97315 0.89078 1.45937 1.15040 1.62953 1.10296 1.17658 0.85307 0.78969 0.83466 1.90832 1.59093 1.43399 1.46133 1.20013 0.95182 0.93631 1.06623 1.17568 0.92499 0.80031 0.96969 1.91665 1.94624 1.36460 1.86401 1.21257 0.95017 0.98415 1.02497 1.21073 0.99665 0.91750 0.95998 1.21052 0.90044 1.01343 1.02109 1.20674 0.90372 0.89360 1.00538 1.98415 1.49551 1.57976 1.95386 0.93335 0.92860 0.91159 0.93141 0.92645 0.92841 0.94062 0.96804 0.93676 0.93269 0.92694 0.76820 0.83429 0.83646 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.57 37.16 0.32 -1.70 16 2 C -0.09 -1.50 0.83 -152.36 -0.13 -1.63 16 3 C -0.13 -1.73 8.22 37.16 0.31 -1.42 16 4 C 0.14 2.87 6.12 -2.53 -0.02 2.86 16 5 N -0.60 -15.15 3.38 -170.08 -0.57 -15.73 16 6 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 7 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 8 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 9 N -0.92 -27.73 10.31 55.49 0.57 -27.15 16 10 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.18 4.37 4.79 -3.07 -0.01 4.36 16 15 C 0.12 2.41 2.59 -66.10 -0.17 2.24 16 16 H 0.09 1.85 7.45 -51.93 -0.39 1.47 16 17 N -0.69 -12.21 4.45 -53.04 -0.24 -12.45 16 18 C 0.56 10.40 5.95 -12.43 -0.07 10.33 16 19 O -0.52 -11.57 16.75 5.29 0.09 -11.48 16 20 C -0.15 -2.24 5.64 -104.89 -0.59 -2.83 16 21 C 0.15 2.12 7.29 -38.96 -0.28 1.84 16 22 F -0.11 -1.99 16.83 2.25 0.04 -1.96 16 23 C -0.15 -1.50 10.01 -39.56 -0.40 -1.89 16 24 C -0.07 -0.50 10.03 -39.52 -0.40 -0.89 16 25 C -0.13 -1.08 9.81 -39.60 -0.39 -1.47 16 26 C 0.02 0.22 6.35 -39.07 -0.25 -0.03 16 27 Cl -0.04 -0.51 28.04 -51.86 -1.45 -1.96 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 31 H 0.05 0.63 6.48 -51.93 -0.34 0.30 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 35 H 0.01 0.28 7.98 -51.93 -0.41 -0.14 16 36 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.05 1.42 7.41 -51.93 -0.38 1.04 16 38 H 0.06 1.55 7.38 -51.93 -0.38 1.16 16 39 H 0.40 6.26 7.10 -40.82 -0.29 5.97 16 40 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 42 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -33.60 365.26 -8.95 -42.54 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.53 Total: 2.32 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -2.33 Total: 2.93 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.24 Total: -55.33 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.45 Total: -1.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.60 -8.95 -42.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977528178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.645 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds