Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.91345 * 2 1 4 4 C 1.54909 * 111.00746 * 236.09922 * 2 1 3 5 5 N 1.47427 * 104.83261 * 278.93662 * 4 2 1 6 6 C 1.36936 * 125.65202 * 155.91358 * 5 4 2 7 7 H 1.08002 * 119.99334 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99996 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00284 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99672 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46856 * 90.00343 * 10 8 6 12 12 H 1.48495 * 109.47184 * 210.00066 * 10 8 6 13 13 H 1.48498 * 109.47568 * 330.00275 * 10 8 6 14 14 C 1.47022 * 108.70050 * 335.87352 * 5 4 2 15 15 C 1.54320 * 107.27418 * 1.05533 * 14 5 4 16 16 H 1.09001 * 110.87157 * 140.63152 * 15 14 5 17 17 N 1.46500 * 110.72369 * 263.83495 * 15 14 5 18 18 C 1.34772 * 120.00215 * 268.52162 * 17 15 14 19 19 O 1.21584 * 120.00113 * 359.97438 * 18 17 15 20 20 C 1.47622 * 120.00464 * 179.97438 * 18 17 15 21 21 C 1.39880 * 120.17373 * 270.00198 * 20 18 17 22 22 F 1.35102 * 120.10760 * 359.97438 * 21 20 18 23 23 C 1.38252 * 119.79125 * 180.02562 * 21 20 18 24 24 C 1.38283 * 120.15042 * 0.27630 * 23 21 20 25 25 C 1.38348 * 120.36692 * 359.44697 * 24 23 21 26 26 C 1.38078 * 120.19671 * 0.55201 * 25 24 23 27 27 Cl 1.73600 * 120.07368 * 179.70789 * 26 25 24 28 28 H 1.08997 * 109.46882 * 296.09666 * 1 2 3 29 29 H 1.08999 * 109.46892 * 56.09687 * 1 2 3 30 30 H 1.09003 * 109.46981 * 176.09805 * 1 2 3 31 31 H 1.09000 * 109.47134 * 183.89934 * 3 2 1 32 32 H 1.09000 * 109.47519 * 303.90379 * 3 2 1 33 33 H 1.09001 * 109.47260 * 63.90135 * 3 2 1 34 34 H 1.09005 * 110.36325 * 37.77293 * 4 2 1 35 35 H 1.08994 * 110.36857 * 159.98841 * 4 2 1 36 36 H 0.97001 * 120.00207 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.87803 * 241.64155 * 14 5 4 38 38 H 1.08992 * 109.88661 * 120.47881 * 14 5 4 39 39 H 0.97002 * 119.99854 * 88.52174 * 17 15 14 40 40 H 1.08002 * 119.92071 * 179.97438 * 23 21 20 41 41 H 1.08005 * 119.81321 * 179.69994 * 24 23 21 42 42 H 1.07997 * 119.90323 * 180.27678 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 2.0140 -2.2159 -0.7734 6 6 1.9463 -3.3000 -1.6072 7 1 1.9426 -3.1582 -2.6778 8 6 1.8836 -4.5810 -1.0763 9 7 1.8886 -4.7537 0.2284 10 14 1.7920 -6.0599 -2.2139 11 1 3.1657 -6.5266 -2.5305 12 1 1.0397 -7.1523 -1.5460 13 1 1.0978 -5.6765 -3.4694 14 6 2.0285 -2.2646 0.6960 15 6 2.0862 -0.8080 1.2022 16 1 1.4541 -0.6768 2.0805 17 7 3.4667 -0.4156 1.4963 18 6 3.9655 -0.5840 2.7369 19 8 3.2696 -1.0612 3.6123 20 6 5.3567 -0.1892 3.0331 21 6 6.3982 -1.1089 2.8714 22 9 6.1345 -2.3630 2.4437 23 6 7.6981 -0.7308 3.1516 24 6 7.9684 0.5506 3.5958 25 6 6.9440 1.4671 3.7526 26 6 5.6402 1.1053 3.4770 27 17 4.3563 2.2556 3.6821 28 1 -0.3633 0.4520 0.9229 29 1 -0.3633 0.5732 -0.8529 30 1 -0.3633 -1.0253 -0.0699 31 1 3.1636 1.4026 -0.0699 32 1 1.6705 1.9733 -0.8529 33 1 1.7836 1.9300 0.9229 34 1 1.4673 -0.6460 -2.0837 35 1 3.1177 -0.5219 -1.4036 36 1 1.8451 -5.6489 0.5994 37 1 2.9064 -2.8116 1.0400 38 1 1.1219 -2.7479 1.0599 39 1 4.0217 -0.0345 0.7980 40 1 8.5038 -1.4393 3.0279 41 1 8.9854 0.8386 3.8178 42 1 7.1641 2.4671 4.0957 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977528178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -54.735801 kcal Electronic energy + Delta-G solvation = -28271.830482 eV Core-core repulsion = 24192.077371 eV Total energy + Delta-G solvation = -4079.753111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.18926 -41.52778 -40.19201 -39.08564 -37.60119 -35.74177 -34.61393 -32.64249 -32.47584 -31.60665 -29.78364 -28.09812 -27.44901 -25.80520 -24.59469 -23.92392 -22.38921 -21.63759 -20.37538 -19.21123 -18.72070 -18.40771 -17.95673 -17.57731 -16.84492 -16.72164 -16.35353 -15.93194 -15.73122 -15.56386 -15.48749 -15.07677 -14.82175 -14.58271 -14.31616 -14.01439 -13.85081 -13.48735 -13.23039 -13.16925 -12.99535 -12.88785 -12.73366 -12.68362 -12.61630 -12.48531 -12.18155 -12.14409 -11.89970 -11.79621 -11.58574 -11.36198 -11.20105 -10.76183 -10.16834 -10.12327 -9.88601 -8.91844 -7.84882 -5.22113 -0.32356 -0.13795 0.84181 1.32640 1.42283 1.44966 1.53813 1.99650 2.28094 2.47854 3.01461 3.33494 3.38175 3.49158 3.68790 3.73029 3.80360 3.93559 4.03382 4.09990 4.27286 4.35633 4.47238 4.60410 4.67496 4.82531 4.84668 4.85033 4.91889 4.98821 5.00743 5.09501 5.09731 5.13704 5.23172 5.31844 5.43765 5.53176 5.56587 5.63811 5.69976 6.15300 6.35689 7.01441 7.07091 7.75757 8.40351 9.24715 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012972 B = 0.004218 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.918753 B = 6637.224321 C = 8079.283444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C -0.122 4.122 4 C 0.139 3.861 5 N -0.619 5.619 6 C -0.237 4.237 7 H 0.089 0.911 8 C -0.070 4.070 9 N -0.955 5.955 10 Si 0.978 3.022 11 H -0.288 1.288 12 H -0.299 1.299 13 H -0.262 1.262 14 C 0.195 3.805 15 C 0.135 3.865 16 H 0.080 0.920 17 N -0.684 5.684 18 C 0.562 3.438 19 O -0.570 6.570 20 C -0.178 4.178 21 C 0.111 3.889 22 F -0.148 7.148 23 C -0.141 4.141 24 C -0.040 4.040 25 C -0.108 4.108 26 C 0.010 3.990 27 Cl -0.048 7.048 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.028 0.972 36 H 0.243 0.757 37 H -0.003 1.003 38 H 0.007 0.993 39 H 0.408 0.592 40 H 0.173 0.827 41 H 0.199 0.801 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.372 20.235 5.053 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.075 4.075 3 C -0.179 4.179 4 C 0.014 3.986 5 N -0.345 5.345 6 C -0.366 4.366 7 H 0.107 0.893 8 C -0.262 4.262 9 N -0.605 5.605 10 Si 0.807 3.193 11 H -0.215 1.215 12 H -0.225 1.225 13 H -0.187 1.187 14 C 0.068 3.932 15 C 0.030 3.970 16 H 0.098 0.902 17 N -0.333 5.333 18 C 0.348 3.652 19 O -0.450 6.450 20 C -0.183 4.183 21 C 0.090 3.910 22 F -0.127 7.127 23 C -0.160 4.160 24 C -0.058 4.058 25 C -0.127 4.127 26 C -0.018 4.018 27 Cl -0.018 7.018 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.015 0.985 38 H 0.026 0.974 39 H 0.245 0.755 40 H 0.190 0.810 41 H 0.216 0.784 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 12.698 19.743 5.641 24.142 hybrid contribution -0.491 -1.938 -0.645 2.101 sum 12.206 17.805 4.997 22.158 Atomic orbital electron populations 1.21586 0.92516 1.01174 1.02718 1.21999 0.96878 0.95770 0.92829 1.21628 1.00742 0.92477 1.03076 1.21883 0.97560 0.83249 0.95904 1.44671 1.86605 1.01658 1.01588 1.19491 1.42335 0.84980 0.89793 0.89335 1.25699 1.02834 1.00454 0.97254 1.70243 1.58455 1.20496 1.11259 0.85075 0.77339 0.78830 0.78093 1.21479 1.22538 1.18689 1.21048 0.97078 0.91153 0.83890 1.22187 0.81948 0.94963 0.97935 0.90228 1.45797 1.14324 1.62490 1.10721 1.18302 0.86691 0.77461 0.82774 1.90786 1.61039 1.45561 1.47564 1.19789 0.92853 0.95649 1.09969 1.18092 0.94383 0.78927 0.99552 1.91575 1.95047 1.38747 1.87325 1.21642 0.93335 1.00086 1.00924 1.21703 1.01707 0.89797 0.92579 1.21580 0.88326 1.03150 0.99619 1.20867 0.91760 0.88124 1.01055 1.98410 1.50304 1.57694 1.95423 0.91664 0.90009 0.95041 0.92268 0.89976 0.91873 0.92978 0.95432 0.94782 0.98498 0.97438 0.75543 0.80998 0.78393 0.79995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 8.57 71.98 0.62 -3.25 16 2 C -0.07 -2.42 0.83 -50.79 -0.04 -2.46 16 3 C -0.12 -2.87 8.22 71.98 0.59 -2.28 16 4 C 0.14 5.47 6.12 86.85 0.53 6.00 16 5 N -0.62 -32.46 3.38 -692.00 -2.34 -34.80 16 6 C -0.24 -13.59 10.28 84.03 0.86 -12.72 16 7 H 0.09 4.76 7.83 -2.91 -0.02 4.73 16 8 C -0.07 -4.16 5.49 84.86 0.47 -3.70 16 9 N -0.96 -61.90 10.31 21.65 0.22 -61.67 16 10 Si 0.98 47.73 29.55 68.60 2.03 49.76 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 12 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 13 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 14 C 0.19 10.55 4.79 86.73 0.42 10.96 16 15 C 0.14 5.57 2.59 46.18 0.12 5.69 16 16 H 0.08 3.48 7.45 -2.39 -0.02 3.46 16 17 N -0.68 -25.13 4.45 -439.99 -1.96 -27.08 16 18 C 0.56 21.99 5.95 86.72 0.52 22.51 16 19 O -0.57 -27.48 16.75 -3.98 -0.07 -27.55 16 20 C -0.18 -5.39 5.64 -20.04 -0.11 -5.51 16 21 C 0.11 3.18 7.29 22.67 0.17 3.35 16 22 F -0.15 -5.64 16.83 44.97 0.76 -4.88 16 23 C -0.14 -2.39 10.01 22.28 0.22 -2.16 16 24 C -0.04 -0.39 10.03 22.31 0.22 -0.16 16 25 C -0.11 -1.37 9.81 22.26 0.22 -1.15 16 26 C 0.01 0.21 6.35 22.60 0.14 0.35 16 27 Cl -0.05 -1.06 28.04 -2.72 -0.08 -1.14 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.03 1.22 7.91 -2.39 -0.02 1.20 16 31 H 0.06 1.31 6.48 -2.39 -0.02 1.29 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.96 8.05 -2.38 -0.02 1.94 16 35 H 0.03 1.04 7.98 -2.39 -0.02 1.02 16 36 H 0.24 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.00 -0.20 7.41 -2.38 -0.02 -0.22 16 38 H 0.01 0.47 7.38 -2.39 -0.02 0.45 16 39 H 0.41 12.98 7.10 -92.71 -0.66 12.33 16 40 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.20 -0.03 8.06 -2.91 -0.02 -0.05 16 42 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -83.47 365.26 3.90 -79.57 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.40 Total: 12.32 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 4.94 Total: 15.48 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -4.07 Total: -123.56 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.07 Total: -27.55 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.76 Total: -4.88 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -83.47 3.90 -79.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977528178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.831 kcal (2) G-P(sol) polarization free energy of solvation -83.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds