Wall clock time and date at job start Sat Apr 11 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37822 * 119.92431 * 2 1 4 4 C 1.39662 * 119.89366 * 180.18976 * 3 2 1 5 5 C 1.47647 * 120.12877 * 179.81203 * 4 3 2 6 6 O 1.21574 * 119.99977 * 132.09919 * 5 4 3 7 7 N 1.34776 * 119.99880 * 312.09557 * 5 4 3 8 8 C 1.47026 * 125.64807 * 4.95962 * 7 5 4 9 9 C 1.54319 * 107.26913 * 181.02461 * 8 7 5 10 10 C 1.55155 * 102.94670 * 22.18954 * 9 8 7 11 11 H 1.08999 * 111.00526 * 82.60931 * 10 9 8 12 12 N 1.46500 * 111.00737 * 206.42600 * 10 9 8 13 13 C 1.46500 * 119.99855 * 59.99784 * 12 10 9 14 14 C 1.36942 * 120.00224 * 240.00146 * 12 10 9 15 15 H 1.07996 * 119.99676 * 24.07609 * 14 12 10 16 16 C 1.38810 * 120.00164 * 204.07861 * 14 12 10 17 17 N 1.31618 * 119.99813 * 9.31672 * 16 14 12 18 18 Si 1.86797 * 120.00099 * 189.31880 * 16 14 12 19 19 H 1.48503 * 109.46977 * 59.99562 * 18 16 14 20 20 H 1.48493 * 109.47195 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46917 * 300.00107 * 18 16 14 22 22 C 1.47419 * 125.64614 * 184.65040 * 7 5 4 23 23 C 1.39813 * 119.73768 * 359.52656 * 4 3 2 24 24 Cl 1.73599 * 120.07614 * 180.27947 * 23 4 3 25 25 C 1.37988 * 119.84196 * 0.26084 * 23 4 3 26 26 C 1.38602 * 120.10972 * 359.97438 * 25 23 4 27 27 F 1.35093 * 119.87073 * 180.02562 * 26 25 23 28 28 H 1.09003 * 109.47695 * 270.26217 * 1 2 3 29 29 H 1.09001 * 109.47069 * 30.26034 * 1 2 3 30 30 H 1.08998 * 109.47175 * 150.25924 * 1 2 3 31 31 H 1.08003 * 120.05443 * 359.96998 * 3 2 1 32 32 H 1.09000 * 109.88065 * 300.43836 * 8 7 5 33 33 H 1.08994 * 109.88127 * 61.45014 * 8 7 5 34 34 H 1.09005 * 110.72187 * 140.55765 * 9 8 7 35 35 H 1.09002 * 110.72032 * 263.64723 * 9 8 7 36 36 H 1.09005 * 109.47105 * 94.80410 * 13 12 10 37 37 H 1.09001 * 109.47234 * 214.80224 * 13 12 10 38 38 H 1.09001 * 109.47144 * 334.80413 * 13 12 10 39 39 H 0.97005 * 120.00351 * 180.02562 * 17 16 14 40 40 H 1.08997 * 110.36699 * 274.74519 * 22 7 5 41 41 H 1.08999 * 110.37426 * 37.07374 * 22 7 5 42 42 H 1.08006 * 119.94460 * 179.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1945 0.0000 4 6 3.5911 1.1937 -0.0040 5 6 4.3329 2.4703 -0.0082 6 8 5.2508 2.6426 0.7701 7 7 3.9924 3.4447 -0.8749 8 6 2.8458 3.4112 -1.7946 9 6 2.8697 4.7245 -2.6046 10 6 4.3508 5.1735 -2.4952 11 1 4.9699 4.6610 -3.2315 12 7 4.4705 6.6271 -2.6330 13 6 3.7870 7.5114 -1.6859 14 6 5.2211 7.1592 -3.6473 15 1 5.3992 6.5861 -4.5452 16 6 5.7532 8.4350 -3.5213 17 7 5.6950 9.0610 -2.3649 18 14 6.5518 9.2635 -4.9927 19 1 5.5562 9.3964 -6.0866 20 1 7.0370 10.6107 -4.5993 21 1 7.6964 8.4422 -5.4623 22 6 4.7043 4.7232 -1.0533 23 6 4.2840 -0.0206 0.0020 24 17 6.0200 -0.0318 0.0044 25 6 3.5847 -1.2102 0.0065 26 6 2.1987 -1.2019 0.0055 27 9 1.5189 -2.3694 0.0103 28 1 -0.3634 0.0047 1.0276 29 1 -0.3633 0.8876 -0.5179 30 1 -0.3633 -0.8923 -0.5098 31 1 1.6541 2.1296 -0.0005 32 1 2.9354 2.5587 -2.4679 33 1 1.9177 3.3395 -1.2275 34 1 2.5980 4.5414 -3.6443 35 1 2.2055 5.4648 -2.1587 36 1 4.4746 7.7888 -0.8868 37 1 3.4515 8.4095 -2.2046 38 1 2.9266 6.9939 -1.2616 39 1 6.0665 9.9528 -2.2769 40 1 4.3538 5.4570 -0.3276 41 1 5.7798 4.5755 -0.9555 42 1 4.1183 -2.1492 0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980281694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:20 Heat of formation + Delta-G solvation = -26.637348 kcal Electronic energy + Delta-G solvation = -27196.327390 eV Core-core repulsion = 23117.792720 eV Total energy + Delta-G solvation = -4078.534670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.39317 -40.49275 -38.85862 -37.36224 -36.73248 -34.86640 -33.09613 -32.08296 -31.07037 -29.77710 -27.86547 -27.32726 -26.09887 -24.72168 -23.32397 -22.37666 -22.14783 -19.47829 -19.33713 -18.12739 -17.50340 -17.16504 -16.97175 -16.19234 -15.79662 -15.69535 -14.94373 -14.65664 -14.41873 -14.08182 -14.02038 -13.81974 -13.62989 -13.38139 -13.20725 -13.13013 -12.77127 -12.46635 -12.43379 -12.28617 -12.05489 -11.63924 -11.51103 -11.32002 -11.18472 -10.89895 -10.84442 -10.52736 -10.50835 -10.33118 -9.96027 -9.88406 -9.80049 -9.38791 -8.92535 -8.62955 -8.38492 -6.83350 -5.79256 -3.28869 0.33906 0.59802 1.77326 2.53859 2.94491 3.22986 3.35881 3.41317 3.41808 3.73776 4.13446 4.24480 4.33709 4.44144 4.67738 4.87316 4.93300 5.05351 5.15772 5.18095 5.23536 5.33668 5.39836 5.46517 5.52887 5.59927 5.62518 5.71546 5.78805 5.85531 5.95872 6.21581 6.25769 6.32633 6.45770 6.57653 6.73453 6.83006 7.32063 7.65453 7.68897 7.75072 8.20947 8.32901 9.15894 9.77090 10.25966 11.24906 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018953 B = 0.002755 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.997640 B =10161.202866 C =10927.864196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.118 4.118 3 C -0.054 4.054 4 C -0.115 4.115 5 C 0.567 3.433 6 O -0.519 6.519 7 N -0.605 5.605 8 C 0.100 3.900 9 C -0.154 4.154 10 C 0.174 3.826 11 H 0.079 0.921 12 N -0.584 5.584 13 C 0.160 3.840 14 C -0.263 4.263 15 H 0.070 0.930 16 C 0.007 3.993 17 N -0.905 5.905 18 Si 0.908 3.092 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.089 3.911 23 C 0.025 3.975 24 Cl -0.030 7.030 25 C -0.148 4.148 26 C 0.124 3.876 27 F -0.128 7.128 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.151 0.849 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.045 0.955 38 H 0.000 1.000 39 H 0.255 0.745 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.091 -19.980 4.059 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.119 4.119 3 C -0.072 4.072 4 C -0.119 4.119 5 C 0.354 3.646 6 O -0.395 6.395 7 N -0.339 5.339 8 C -0.023 4.023 9 C -0.194 4.194 10 C 0.063 3.937 11 H 0.097 0.903 12 N -0.305 5.305 13 C 0.016 3.984 14 C -0.392 4.392 15 H 0.087 0.913 16 C -0.192 4.192 17 N -0.549 5.549 18 Si 0.738 3.262 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.208 1.208 22 C -0.035 4.035 23 C -0.003 4.003 24 Cl -0.001 7.001 25 C -0.168 4.168 26 C 0.105 3.895 27 F -0.107 7.107 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.168 0.832 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.018 0.982 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.362 -19.735 4.564 22.752 hybrid contribution 0.496 0.208 -0.670 0.860 sum -9.866 -19.526 3.894 22.221 Atomic orbital electron populations 1.20773 0.89112 1.03947 1.03329 1.19948 0.97713 0.91308 1.02971 1.21181 0.91793 0.98279 0.95967 1.19930 0.93872 0.93181 1.04904 1.17557 0.83654 0.82434 0.80966 1.90843 1.29745 1.80372 1.38530 1.48426 1.29740 1.18142 1.37548 1.22206 0.88315 0.99855 0.91971 1.23239 1.01680 0.94851 0.99633 1.21507 0.92697 0.86633 0.92897 0.90288 1.43835 1.55784 0.98015 1.32818 1.20829 0.92275 0.92229 0.93058 1.19172 1.26314 0.99425 0.94331 0.91256 1.25107 0.98660 0.98808 0.96648 1.70044 1.48574 1.14019 1.22268 0.86285 0.79345 0.78634 0.81945 1.20968 1.21577 1.20823 1.23189 0.97321 0.82467 1.00503 1.20578 0.86681 0.92641 1.00356 1.98436 1.06665 1.98778 1.96195 1.20891 0.92337 0.98583 1.04944 1.17429 0.89116 0.81257 1.01732 1.91517 1.79734 1.45875 1.93542 0.90318 0.90303 0.90764 0.83198 0.91703 0.91996 0.90496 0.90408 0.94941 0.93623 0.98170 0.93503 0.91074 0.90704 0.83049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 9.83 36.00 0.35 -0.35 16 2 C -0.12 -1.03 5.88 -104.61 -0.62 -1.64 16 3 C -0.05 -0.53 8.16 -39.20 -0.32 -0.85 16 4 C -0.11 -1.47 5.41 -104.94 -0.57 -2.04 16 5 C 0.57 9.16 6.94 -12.42 -0.09 9.07 16 6 O -0.52 -10.18 16.05 5.30 0.09 -10.09 16 7 N -0.60 -9.46 3.32 -171.57 -0.57 -10.03 16 8 C 0.10 1.24 5.66 -3.06 -0.02 1.22 16 9 C -0.15 -2.27 6.49 -24.90 -0.16 -2.44 16 10 C 0.17 3.31 3.55 -65.66 -0.23 3.08 16 11 H 0.08 1.54 7.96 -51.93 -0.41 1.13 16 12 N -0.58 -13.80 2.96 -170.89 -0.51 -14.30 16 13 C 0.16 3.73 7.54 59.85 0.45 4.18 16 14 C -0.26 -6.92 9.61 -15.06 -0.14 -7.07 16 15 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 16 C 0.01 0.18 5.17 -17.43 -0.09 0.09 16 17 N -0.91 -25.67 10.58 55.49 0.59 -25.08 16 18 Si 0.91 21.29 29.56 -169.99 -5.03 16.26 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 C 0.09 1.66 6.44 -2.41 -0.02 1.65 16 23 C 0.03 0.31 6.34 -39.08 -0.25 0.06 16 24 Cl -0.03 -0.40 27.11 -51.86 -1.41 -1.81 16 25 C -0.15 -1.45 9.79 -39.54 -0.39 -1.84 16 26 C 0.12 1.17 7.25 -39.28 -0.28 0.88 16 27 F -0.13 -1.18 16.46 2.25 0.04 -1.14 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.07 0.43 7.63 -51.93 -0.40 0.03 16 31 H 0.15 1.25 5.97 -52.48 -0.31 0.94 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.62 6.00 -51.93 -0.31 0.30 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.19 6.47 -51.93 -0.34 0.85 16 36 H 0.03 0.83 7.35 -51.93 -0.38 0.45 16 37 H 0.05 1.15 7.29 -51.93 -0.38 0.77 16 38 H 0.00 0.00 6.38 -51.93 -0.33 -0.33 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.07 1.41 6.97 -51.93 -0.36 1.05 16 41 H 0.07 1.54 8.08 -51.93 -0.42 1.12 16 42 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -30.44 358.24 -9.07 -39.50 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.30 Total: -2.73 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -2.37 Total: 4.02 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.49 Total: -49.41 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.41 Total: -1.81 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.44 -9.07 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980281694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.865 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds