Wall clock time and date at job start Sat Apr 11 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00117 * 2 1 4 4 H 1.48501 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47217 * 300.00726 * 3 2 1 6 6 H 1.48497 * 109.46923 * 60.00878 * 3 2 1 7 7 C 1.38811 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00214 * 194.64856 * 7 2 1 9 9 N 1.36936 * 120.00335 * 14.64507 * 7 2 1 10 10 C 1.43464 * 118.94310 * 204.96467 * 9 7 2 11 11 C 1.53792 * 107.96233 * 273.62728 * 10 9 7 12 12 C 1.47147 * 111.84132 * 281.67301 * 11 10 9 13 13 N 1.48203 * 110.34214 * 58.29349 * 12 11 10 14 14 C 1.34778 * 119.97080 * 102.46821 * 13 12 11 15 15 O 1.21278 * 120.00074 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00193 * 179.97438 * 14 13 12 17 17 C 1.50702 * 109.47565 * 179.97438 * 16 14 13 18 18 C 1.38264 * 119.97231 * 270.30443 * 17 16 14 19 19 C 1.38194 * 120.04874 * 180.29393 * 18 17 16 20 20 C 1.38451 * 119.98441 * 359.42568 * 19 18 17 21 21 F 1.35094 * 120.02636 * 180.25100 * 20 19 18 22 22 C 1.38545 * 119.94036 * 0.27512 * 20 19 18 23 23 Cl 1.73602 * 120.02561 * 180.02562 * 22 20 19 24 24 C 1.38216 * 119.96515 * 90.00014 * 17 16 14 25 25 C 1.43620 * 120.05881 * 282.74227 * 13 12 11 26 26 C 1.48859 * 118.94012 * 24.93672 * 9 7 2 27 27 H 0.96997 * 120.00048 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.76617 * 154.01123 * 10 9 7 29 29 H 1.09003 * 109.80740 * 33.26763 * 10 9 7 30 30 H 1.09003 * 109.00845 * 161.06520 * 11 10 9 31 31 H 1.09003 * 108.94736 * 42.24100 * 11 10 9 32 32 H 1.08997 * 109.32229 * 298.02396 * 12 11 10 33 33 H 1.09001 * 109.17872 * 178.47248 * 12 11 10 34 34 H 1.09004 * 109.46754 * 60.00293 * 16 14 13 35 35 H 1.08996 * 109.47526 * 300.00517 * 16 14 13 36 36 H 1.08000 * 119.97351 * 0.02562 * 18 17 16 37 37 H 1.07992 * 120.00535 * 179.69505 * 19 18 17 38 38 H 1.08004 * 119.99353 * 0.02562 * 24 17 16 39 39 H 1.09009 * 108.87497 * 211.19877 * 25 13 12 40 40 H 1.09002 * 108.87316 * 329.63345 * 25 13 12 41 41 H 1.09004 * 109.48522 * 260.60738 * 26 9 7 42 42 H 1.09005 * 109.47617 * 20.63140 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2123 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0639 -1.2176 0.2360 9 7 1.3589 -2.3687 -0.3009 10 6 1.8823 -3.6057 0.2031 11 6 2.9392 -4.1139 -0.7919 12 6 2.3233 -4.7453 -1.9697 13 7 1.4278 -3.7865 -2.6591 14 6 1.8372 -3.1754 -3.7884 15 8 2.9378 -3.4106 -4.2404 16 6 0.9269 -2.2008 -4.4903 17 6 1.6176 -1.6621 -5.7166 18 6 2.3963 -0.5231 -5.6266 19 6 3.0254 -0.0242 -6.7513 20 6 2.8855 -0.6720 -7.9670 21 9 3.5042 -0.1879 -9.0660 22 6 2.1101 -1.8167 -8.0553 23 17 1.9338 -2.6310 -9.5784 24 6 1.4770 -2.3106 -6.9291 25 6 0.1264 -3.5036 -2.1215 26 6 0.1302 -2.3124 -1.1393 27 1 -0.4850 0.8400 0.0004 28 1 1.0788 -4.3367 0.2927 29 1 2.3422 -3.4424 1.1778 30 1 3.5768 -4.8426 -0.2912 31 1 3.5507 -3.2730 -1.1189 32 1 1.7463 -5.6141 -1.6528 33 1 3.1076 -5.0641 -2.6563 34 1 0.6880 -1.3774 -3.8171 35 1 0.0081 -2.7084 -4.7838 36 1 2.5094 -0.0205 -4.6773 37 1 3.6294 0.8682 -6.6812 38 1 0.8721 -3.2027 -6.9972 39 1 -0.5525 -3.2750 -2.9432 40 1 -0.2396 -4.3880 -1.5999 41 1 -0.7500 -2.3648 -0.4985 42 1 0.1159 -1.3782 -1.7009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982024281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:31 Heat of formation + Delta-G solvation = -45.526588 kcal Electronic energy + Delta-G solvation = -27941.640416 eV Core-core repulsion = 23862.286646 eV Total energy + Delta-G solvation = -4079.353769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.05995 -41.39046 -40.09253 -38.48438 -37.62911 -35.87727 -34.59343 -33.39003 -32.61236 -32.02617 -29.37977 -28.52728 -26.87079 -25.39502 -24.27122 -23.87336 -22.49173 -21.42746 -19.84770 -18.89216 -18.74156 -17.92549 -17.78497 -17.52400 -16.99485 -16.84561 -16.43955 -16.08331 -15.57311 -15.51376 -15.21828 -15.03874 -14.85034 -14.54112 -14.38841 -14.06882 -13.90817 -13.78810 -13.45734 -13.16496 -13.01795 -12.90588 -12.82337 -12.52885 -12.44153 -12.38281 -12.28942 -12.03130 -12.00468 -11.66140 -11.62953 -11.39087 -10.81248 -10.45415 -10.05586 -9.65454 -9.47611 -8.60162 -7.82227 -5.24311 -0.15104 0.01075 0.88805 1.42332 1.48134 1.55182 1.71361 2.12997 2.47545 2.53944 2.98364 3.30961 3.48602 3.60370 3.71700 3.82291 3.99396 4.07986 4.17638 4.27455 4.29456 4.38657 4.54527 4.58248 4.60956 4.66298 4.76162 4.81504 4.83755 4.91310 4.98635 5.01189 5.09924 5.28453 5.34422 5.36773 5.52887 5.60136 5.65799 5.79118 5.87242 6.43928 6.61387 7.22942 7.30623 8.00685 8.37366 9.21879 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012734 B = 0.003721 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.305426 B = 7523.930399 C = 8861.654318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.035 4.035 3 Si 0.944 3.056 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.294 1.294 7 C -0.255 4.255 8 H 0.049 0.951 9 N -0.606 5.606 10 C 0.159 3.841 11 C -0.154 4.154 12 C 0.128 3.872 13 N -0.585 5.585 14 C 0.517 3.483 15 O -0.585 6.585 16 C -0.099 4.099 17 C -0.060 4.060 18 C -0.082 4.082 19 C -0.138 4.138 20 C 0.091 3.909 21 F -0.134 7.134 22 C -0.079 4.079 23 Cl -0.050 7.050 24 C -0.068 4.068 25 C 0.088 3.912 26 C 0.169 3.831 27 H 0.249 0.751 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.081 0.919 31 H 0.026 0.974 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.022 0.978 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -7.297 -12.557 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.230 4.230 3 Si 0.773 3.227 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.222 1.222 7 C -0.386 4.386 8 H 0.066 0.934 9 N -0.328 5.328 10 C 0.031 3.969 11 C -0.195 4.195 12 C 0.006 3.994 13 N -0.315 5.315 14 C 0.307 3.693 15 O -0.466 6.466 16 C -0.138 4.138 17 C -0.061 4.061 18 C -0.100 4.100 19 C -0.157 4.157 20 C 0.071 3.929 21 F -0.113 7.113 22 C -0.106 4.106 23 Cl -0.021 7.021 24 C -0.087 4.087 25 C -0.037 4.037 26 C 0.044 3.956 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.180 0.820 38 H 0.178 0.822 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.040 0.960 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.138 -7.391 -12.950 14.954 hybrid contribution 0.776 1.432 0.156 1.636 sum -0.361 -5.960 -12.794 14.119 Atomic orbital electron populations 1.70120 1.05687 1.25371 1.56133 1.25389 0.95914 1.00026 1.01719 0.85570 0.78368 0.81638 0.77077 1.20611 1.21133 1.22166 1.19324 0.91739 0.86478 1.41097 0.93366 1.43900 1.29396 1.02093 1.57420 1.20418 0.94696 0.87716 0.94035 1.21678 0.99969 0.99845 0.98029 1.20628 0.94046 0.91160 0.93534 1.47494 1.17497 1.42797 1.23740 1.20739 0.87168 0.80623 0.80816 1.90643 1.23255 1.65052 1.67634 1.20760 0.99135 0.99420 0.94468 1.19481 0.97729 0.94929 0.94001 1.21203 0.94515 0.95639 0.98652 1.21264 1.02186 1.02060 0.90144 1.17530 0.96901 0.94362 0.84134 1.91504 1.80662 1.87347 1.51740 1.20986 1.03792 0.96076 0.89753 1.98370 1.96682 1.78152 1.28854 1.20954 0.98558 0.99817 0.89363 1.22008 0.83406 0.99772 0.98540 1.21699 0.87200 0.95866 0.90865 0.94105 0.92360 0.95022 0.90038 0.95536 0.88590 0.91145 0.87570 0.84354 0.84648 0.82047 0.82173 0.88244 0.89507 0.96036 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.70 10.90 21.65 0.24 -49.47 16 2 C -0.03 -1.81 4.94 84.86 0.42 -1.39 16 3 Si 0.94 43.21 29.58 68.60 2.03 45.24 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.26 -13.27 9.27 84.03 0.78 -12.49 16 8 H 0.05 2.61 7.87 -2.91 -0.02 2.59 16 9 N -0.61 -27.04 2.54 -699.01 -1.77 -28.81 16 10 C 0.16 5.86 5.63 87.21 0.49 6.35 16 11 C -0.15 -5.08 5.64 29.04 0.16 -4.92 16 12 C 0.13 3.68 5.70 84.23 0.48 4.16 16 13 N -0.59 -17.81 2.47 -832.20 -2.05 -19.86 16 14 C 0.52 16.86 7.66 87.66 0.67 17.53 16 15 O -0.58 -23.04 15.47 -3.02 -0.05 -23.08 16 16 C -0.10 -2.55 4.38 29.10 0.13 -2.42 16 17 C -0.06 -1.60 4.37 -19.86 -0.09 -1.69 16 18 C -0.08 -2.25 9.70 22.27 0.22 -2.03 16 19 C -0.14 -3.46 10.03 22.31 0.22 -3.24 16 20 C 0.09 2.38 7.28 22.39 0.16 2.54 16 21 F -0.13 -3.54 16.84 44.97 0.76 -2.79 16 22 C -0.08 -1.98 6.33 22.36 0.14 -1.83 16 23 Cl -0.05 -1.13 28.62 -2.72 -0.08 -1.20 16 24 C -0.07 -1.64 9.48 22.28 0.21 -1.43 16 25 C 0.09 2.45 5.01 87.39 0.44 2.89 16 26 C 0.17 6.73 5.17 86.40 0.45 7.18 16 27 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 28 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 29 H 0.03 1.24 8.02 -2.39 -0.02 1.22 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.03 1.08 7.91 -2.39 -0.02 1.06 16 32 H 0.10 2.13 8.06 -2.39 -0.02 2.11 16 33 H 0.07 2.16 7.12 -2.39 -0.02 2.15 16 34 H 0.11 3.03 7.26 -2.38 -0.02 3.02 16 35 H 0.14 2.50 7.32 -2.39 -0.02 2.49 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 38 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.10 2.16 6.38 -2.38 -0.02 2.14 16 40 H 0.09 2.06 7.73 -2.39 -0.02 2.04 16 41 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 42 H 0.05 2.24 5.72 -2.38 -0.01 2.23 16 Total: -1.00 -64.38 357.91 5.00 -59.38 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 1.04 Total: 11.40 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 4.89 Total: 9.19 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -3.59 Total: -98.14 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.05 Total: -23.08 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.76 Total: -2.79 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.20 kcal Total: -64.38 5.00 -59.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982024281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.856 kcal (2) G-P(sol) polarization free energy of solvation -64.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds