Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86809 * 120.00223 * 2 1 4 4 H 1.48501 * 109.46883 * 85.74234 * 3 2 1 5 5 H 1.48493 * 109.47004 * 325.74553 * 3 2 1 6 6 H 1.48490 * 109.47188 * 205.74254 * 3 2 1 7 7 C 1.38817 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99381 * 22.85033 * 7 2 1 9 9 N 1.36931 * 120.00248 * 202.85133 * 7 2 1 10 10 C 1.43456 * 118.94324 * 204.34259 * 9 7 2 11 11 C 1.53236 * 108.26811 * 273.78274 * 10 9 7 12 12 C 1.47136 * 111.81201 * 281.67892 * 11 10 9 13 13 N 1.48205 * 110.34813 * 58.22586 * 12 11 10 14 14 C 1.34776 * 119.97310 * 102.46008 * 13 12 11 15 15 O 1.21283 * 120.00313 * 0.02562 * 14 13 12 16 16 C 1.50707 * 120.00078 * 180.02562 * 14 13 12 17 17 C 1.50695 * 109.47032 * 180.02562 * 16 14 13 18 18 C 1.38243 * 120.00267 * 264.72308 * 17 16 14 19 19 C 1.38221 * 120.04696 * 179.77547 * 18 17 16 20 20 C 1.38262 * 120.06414 * 0.50061 * 19 18 17 21 21 C 1.38279 * 120.00626 * 359.75175 * 20 19 18 22 22 Cl 1.73604 * 120.01981 * 179.97438 * 21 20 19 23 23 C 1.38403 * 120.01112 * 85.00013 * 17 16 14 24 24 F 1.35096 * 120.02798 * 359.97438 * 23 17 16 25 25 C 1.43625 * 120.05481 * 282.48487 * 13 12 11 26 26 C 1.48863 * 118.93776 * 24.61592 * 9 7 2 27 27 H 0.96995 * 120.00023 * 185.17476 * 1 2 3 28 28 H 1.09004 * 109.76149 * 33.25439 * 10 9 7 29 29 H 1.09007 * 109.76316 * 154.01339 * 10 9 7 30 30 H 1.09007 * 109.07655 * 161.03705 * 11 10 9 31 31 H 1.09007 * 108.89902 * 42.20000 * 11 10 9 32 32 H 1.08999 * 109.32476 * 297.95386 * 12 11 10 33 33 H 1.09004 * 109.17744 * 178.40055 * 12 11 10 34 34 H 1.09003 * 109.47108 * 300.00383 * 16 14 13 35 35 H 1.08999 * 109.46918 * 60.00100 * 16 14 13 36 36 H 1.07996 * 119.97557 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.96826 * 180.25201 * 19 18 17 38 38 H 1.07995 * 119.99485 * 179.77403 * 20 19 18 39 39 H 1.08992 * 108.87610 * 329.88436 * 25 13 12 40 40 H 1.08998 * 108.87136 * 211.44705 * 25 13 12 41 41 H 1.08999 * 109.48236 * 260.59605 * 26 9 7 42 42 H 1.08998 * 109.48211 * 20.62155 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4077 2.0984 1.3962 5 1 1.4956 2.6250 -0.7880 6 1 3.5898 1.4159 -0.6080 7 6 2.0103 -1.2022 -0.0005 8 1 1.5338 -2.1006 -0.3642 9 7 3.2990 -1.2489 0.4599 10 6 4.1653 -2.2932 -0.0060 11 6 3.9596 -3.5218 0.8863 12 6 4.6621 -3.3875 2.1721 13 7 4.1946 -2.1787 2.8910 14 6 3.3271 -2.2980 3.9156 15 8 2.9298 -3.3942 4.2493 16 6 2.8508 -1.0692 4.6466 17 6 1.8959 -1.4738 5.7400 18 6 0.5330 -1.4549 5.5093 19 6 -0.3435 -1.8303 6.5100 20 6 0.1408 -2.2152 7.7465 21 6 1.5034 -2.2299 7.9815 22 17 2.1118 -2.7126 9.5342 23 6 2.3829 -1.8587 6.9770 24 9 3.7144 -1.8725 7.2049 25 6 4.6646 -0.8802 2.4963 26 6 3.7542 -0.2181 1.4327 27 1 -0.4850 -0.8366 0.0758 28 1 3.9162 -2.5463 -1.0366 29 1 5.2031 -1.9649 0.0530 30 1 4.3333 -4.4051 0.3681 31 1 2.8933 -3.6462 1.0756 32 1 5.7339 -3.3074 1.9909 33 1 4.4643 -4.2689 2.7821 34 1 3.7052 -0.5524 5.0837 35 1 2.3430 -0.4046 3.9477 36 1 0.1530 -1.1498 4.5456 37 1 -1.4079 -1.8190 6.3272 38 1 -0.5452 -2.5048 8.5288 39 1 5.6703 -0.9784 2.0878 40 1 4.7046 -0.2375 3.3757 41 1 4.3131 0.5561 0.9071 42 1 2.8881 0.2276 1.9220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982031614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -28.457409 kcal Electronic energy + Delta-G solvation = -28425.182665 eV Core-core repulsion = 24346.569071 eV Total energy + Delta-G solvation = -4078.613594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.97303 -40.15222 -39.02408 -37.24368 -36.62971 -34.42097 -33.45604 -32.39179 -31.45871 -30.46575 -28.25753 -27.44384 -25.78960 -23.24106 -23.00271 -22.79360 -21.54580 -19.90120 -18.78358 -17.74561 -17.52031 -16.90342 -16.74516 -16.33784 -15.82634 -15.65717 -15.26867 -14.78174 -14.53483 -14.21959 -14.04370 -13.68553 -13.42316 -13.32938 -13.09858 -12.97665 -12.86257 -12.52909 -12.47028 -12.04066 -11.73836 -11.57416 -11.56492 -11.44732 -11.40502 -11.02186 -11.00637 -10.44567 -10.34375 -10.06539 -9.77793 -9.56983 -9.24504 -8.86471 -8.73360 -8.59867 -8.24008 -7.02712 -6.37607 -3.34585 0.93390 0.98333 1.88557 2.93809 3.22361 3.30241 3.46622 3.53022 3.60626 4.02315 4.42854 4.53040 4.72015 4.81109 4.86312 4.94650 5.06759 5.20091 5.27670 5.33007 5.43836 5.51643 5.54622 5.58194 5.74164 5.76892 5.79056 5.86041 5.89968 6.00653 6.13640 6.24472 6.28033 6.28746 6.38191 6.45409 6.62560 6.66580 6.82763 7.05715 7.75259 8.00570 8.39931 8.50575 8.98599 9.60279 10.08499 11.07051 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.003907 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.502264 B = 7164.046617 C = 8048.343177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 1.052 2.948 4 H -0.296 1.296 5 H -0.300 1.300 6 H -0.285 1.285 7 C -0.346 4.346 8 H 0.066 0.934 9 N -0.598 5.598 10 C 0.163 3.837 11 C -0.169 4.169 12 C 0.130 3.870 13 N -0.586 5.586 14 C 0.528 3.472 15 O -0.544 6.544 16 C -0.106 4.106 17 C -0.080 4.080 18 C -0.068 4.068 19 C -0.115 4.115 20 C -0.088 4.088 21 C -0.075 4.075 22 Cl -0.059 7.059 23 C 0.122 3.878 24 F -0.127 7.127 25 C 0.090 3.910 26 C 0.100 3.900 27 H 0.264 0.736 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.041 0.959 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.282 -1.703 13.459 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.213 4.213 3 Si 0.884 3.116 4 H -0.224 1.224 5 H -0.228 1.228 6 H -0.212 1.212 7 C -0.474 4.474 8 H 0.084 0.916 9 N -0.321 5.321 10 C 0.035 3.965 11 C -0.210 4.210 12 C 0.009 3.991 13 N -0.317 5.317 14 C 0.315 3.685 15 O -0.422 6.422 16 C -0.146 4.146 17 C -0.081 4.081 18 C -0.087 4.087 19 C -0.133 4.133 20 C -0.106 4.106 21 C -0.103 4.103 22 Cl -0.030 7.030 23 C 0.101 3.899 24 F -0.105 7.105 25 C -0.036 4.036 26 C -0.026 4.026 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.136 0.864 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.023 -0.708 13.682 14.966 hybrid contribution 0.456 -1.648 0.122 1.714 sum 6.478 -2.356 13.804 15.429 Atomic orbital electron populations 1.70840 1.06377 1.29568 1.48900 1.26100 0.96405 1.00736 0.98022 0.84045 0.74895 0.76725 0.75958 1.22397 1.22838 1.21204 1.20238 0.88422 0.96040 1.42723 0.91591 1.43893 1.10883 1.30282 1.47002 1.20213 0.92819 0.87813 0.95675 1.21739 1.02345 1.00293 0.96598 1.20571 0.97243 0.87627 0.93687 1.47302 1.45232 1.07380 1.31821 1.20144 0.78127 0.90169 0.80011 1.90664 1.56327 1.28066 1.67108 1.20711 0.99404 0.98019 0.96466 1.19366 0.95168 1.01302 0.92303 1.21218 0.91322 0.96074 1.00044 1.21165 1.00697 0.99271 0.92201 1.20939 0.92236 0.99179 0.98290 1.20871 0.94052 1.07543 0.87800 1.98367 1.88102 1.90313 1.26233 1.17153 0.77373 1.02008 0.93321 1.91502 1.30192 1.93918 1.94914 1.21885 0.98490 0.84414 0.98803 1.22639 0.97484 0.92045 0.90396 0.92618 0.93079 0.94682 0.92393 0.91169 0.91924 0.90301 0.87802 0.86438 0.83796 0.84187 0.84164 0.91025 0.90972 0.94099 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 13.70 55.49 0.76 -26.39 16 2 C -0.01 -0.31 5.14 -17.43 -0.09 -0.40 16 3 Si 1.05 24.49 24.44 -169.99 -4.15 20.34 16 4 H -0.30 -6.31 6.75 56.52 0.38 -5.93 16 5 H -0.30 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.29 -6.30 6.41 56.52 0.36 -5.94 16 7 C -0.35 -9.19 9.54 -15.06 -0.14 -9.33 16 8 H 0.07 1.93 8.06 -52.49 -0.42 1.51 16 9 N -0.60 -13.21 2.34 -172.34 -0.40 -13.61 16 10 C 0.16 3.06 5.59 -5.53 -0.03 3.03 16 11 C -0.17 -2.95 5.63 -29.43 -0.17 -3.11 16 12 C 0.13 2.08 5.69 -5.92 -0.03 2.04 16 13 N -0.59 -9.90 2.46 -176.66 -0.43 -10.33 16 14 C 0.53 9.61 7.66 -10.98 -0.08 9.52 16 15 O -0.54 -11.58 15.47 5.55 0.09 -11.49 16 16 C -0.11 -1.63 4.16 -29.03 -0.12 -1.75 16 17 C -0.08 -1.22 4.38 -104.56 -0.46 -1.67 16 18 C -0.07 -0.97 9.68 -39.59 -0.38 -1.35 16 19 C -0.12 -1.35 10.04 -39.58 -0.40 -1.75 16 20 C -0.09 -1.01 9.83 -39.56 -0.39 -1.39 16 21 C -0.08 -1.01 6.33 -39.44 -0.25 -1.26 16 22 Cl -0.06 -0.72 28.62 -51.86 -1.48 -2.21 16 23 C 0.12 1.83 7.22 -39.39 -0.28 1.55 16 24 F -0.13 -1.97 16.14 2.25 0.04 -1.93 16 25 C 0.09 1.36 5.05 -4.58 -0.02 1.34 16 26 C 0.10 1.93 4.52 -1.74 -0.01 1.92 16 27 H 0.26 7.85 8.73 -40.82 -0.36 7.49 16 28 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 29 H 0.03 0.58 7.58 -51.92 -0.39 0.18 16 30 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.07 1.51 7.91 -51.92 -0.41 1.10 16 32 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 33 H 0.08 1.33 7.12 -51.93 -0.37 0.96 16 34 H 0.10 1.33 7.02 -51.93 -0.36 0.97 16 35 H 0.12 1.82 7.22 -51.93 -0.38 1.44 16 36 H 0.14 2.07 8.06 -52.49 -0.42 1.64 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.07 0.94 7.73 -51.93 -0.40 0.54 16 40 H 0.07 0.90 6.38 -51.93 -0.33 0.57 16 41 H 0.04 0.77 5.81 -51.93 -0.30 0.47 16 42 H 0.07 1.47 4.74 -51.93 -0.25 1.22 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -32.00 350.58 -8.52 -40.52 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.35 Total: 2.43 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.86 Total: -2.61 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.08 Total: -50.33 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -4.15 Total: 20.34 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.48 Total: -2.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.00 -8.52 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982031614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.067 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds