Wall clock time and date at job start Sat Apr 11 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86809 * 120.00223 * 2 1 4 4 H 1.48501 * 109.46883 * 85.74234 * 3 2 1 5 5 H 1.48493 * 109.47004 * 325.74553 * 3 2 1 6 6 H 1.48490 * 109.47188 * 205.74254 * 3 2 1 7 7 C 1.38817 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99381 * 22.85033 * 7 2 1 9 9 N 1.36931 * 120.00248 * 202.85133 * 7 2 1 10 10 C 1.43456 * 118.94324 * 204.34259 * 9 7 2 11 11 C 1.53236 * 108.26811 * 273.78274 * 10 9 7 12 12 C 1.47136 * 111.81201 * 281.67892 * 11 10 9 13 13 N 1.48205 * 110.34813 * 58.22586 * 12 11 10 14 14 C 1.34776 * 119.97310 * 102.46008 * 13 12 11 15 15 O 1.21283 * 120.00313 * 0.02562 * 14 13 12 16 16 C 1.50707 * 120.00078 * 180.02562 * 14 13 12 17 17 C 1.50695 * 109.47032 * 180.02562 * 16 14 13 18 18 C 1.38243 * 120.00267 * 264.72308 * 17 16 14 19 19 C 1.38221 * 120.04696 * 179.77547 * 18 17 16 20 20 C 1.38262 * 120.06414 * 0.50061 * 19 18 17 21 21 C 1.38279 * 120.00626 * 359.75175 * 20 19 18 22 22 Cl 1.73604 * 120.01981 * 179.97438 * 21 20 19 23 23 C 1.38403 * 120.01112 * 85.00013 * 17 16 14 24 24 F 1.35096 * 120.02798 * 359.97438 * 23 17 16 25 25 C 1.43625 * 120.05481 * 282.48487 * 13 12 11 26 26 C 1.48863 * 118.93776 * 24.61592 * 9 7 2 27 27 H 0.96995 * 120.00023 * 185.17476 * 1 2 3 28 28 H 1.09004 * 109.76149 * 33.25439 * 10 9 7 29 29 H 1.09007 * 109.76316 * 154.01339 * 10 9 7 30 30 H 1.09007 * 109.07655 * 161.03705 * 11 10 9 31 31 H 1.09007 * 108.89902 * 42.20000 * 11 10 9 32 32 H 1.08999 * 109.32476 * 297.95386 * 12 11 10 33 33 H 1.09004 * 109.17744 * 178.40055 * 12 11 10 34 34 H 1.09003 * 109.47108 * 300.00383 * 16 14 13 35 35 H 1.08999 * 109.46918 * 60.00100 * 16 14 13 36 36 H 1.07996 * 119.97557 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.96826 * 180.25201 * 19 18 17 38 38 H 1.07995 * 119.99485 * 179.77403 * 20 19 18 39 39 H 1.08992 * 108.87610 * 329.88436 * 25 13 12 40 40 H 1.08998 * 108.87136 * 211.44705 * 25 13 12 41 41 H 1.08999 * 109.48236 * 260.59605 * 26 9 7 42 42 H 1.08998 * 109.48211 * 20.62155 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4077 2.0984 1.3962 5 1 1.4956 2.6250 -0.7880 6 1 3.5898 1.4159 -0.6080 7 6 2.0103 -1.2022 -0.0005 8 1 1.5338 -2.1006 -0.3642 9 7 3.2990 -1.2489 0.4599 10 6 4.1653 -2.2932 -0.0060 11 6 3.9596 -3.5218 0.8863 12 6 4.6621 -3.3875 2.1721 13 7 4.1946 -2.1787 2.8910 14 6 3.3271 -2.2980 3.9156 15 8 2.9298 -3.3942 4.2493 16 6 2.8508 -1.0692 4.6466 17 6 1.8959 -1.4738 5.7400 18 6 0.5330 -1.4549 5.5093 19 6 -0.3435 -1.8303 6.5100 20 6 0.1408 -2.2152 7.7465 21 6 1.5034 -2.2299 7.9815 22 17 2.1118 -2.7126 9.5342 23 6 2.3829 -1.8587 6.9770 24 9 3.7144 -1.8725 7.2049 25 6 4.6646 -0.8802 2.4963 26 6 3.7542 -0.2181 1.4327 27 1 -0.4850 -0.8366 0.0758 28 1 3.9162 -2.5463 -1.0366 29 1 5.2031 -1.9649 0.0530 30 1 4.3333 -4.4051 0.3681 31 1 2.8933 -3.6462 1.0756 32 1 5.7339 -3.3074 1.9909 33 1 4.4643 -4.2689 2.7821 34 1 3.7052 -0.5524 5.0837 35 1 2.3430 -0.4046 3.9477 36 1 0.1530 -1.1498 4.5456 37 1 -1.4079 -1.8190 6.3272 38 1 -0.5452 -2.5048 8.5288 39 1 5.6703 -0.9784 2.0878 40 1 4.7046 -0.2375 3.3757 41 1 4.3131 0.5561 0.9071 42 1 2.8881 0.2276 1.9220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982031614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:36 Heat of formation + Delta-G solvation = -47.437163 kcal Electronic energy + Delta-G solvation = -28426.005689 eV Core-core repulsion = 24346.569071 eV Total energy + Delta-G solvation = -4079.436618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.09979 -41.47482 -40.12290 -38.74431 -37.64751 -36.05613 -34.80028 -33.74534 -33.25589 -31.49283 -29.59105 -28.84442 -27.29028 -24.92397 -24.28951 -23.88840 -22.76306 -21.57112 -20.13992 -19.36018 -18.79023 -18.25623 -17.90648 -17.61166 -17.05513 -16.85809 -16.70415 -16.32456 -15.74319 -15.61502 -15.55197 -15.10484 -14.73361 -14.55127 -14.44886 -14.30582 -14.06221 -13.97247 -13.87761 -13.39503 -13.28810 -12.91229 -12.76297 -12.55144 -12.54654 -12.47227 -12.03013 -11.98532 -11.90510 -11.60760 -11.47262 -11.26694 -10.96812 -10.60248 -9.92243 -9.77878 -9.63249 -8.91888 -8.54223 -5.44707 -0.11192 -0.05057 0.87989 1.45335 1.54913 1.62548 1.77583 2.03791 2.41636 2.60653 2.97667 3.09202 3.32483 3.44375 3.61663 3.72320 3.91451 4.02882 4.07798 4.08248 4.15354 4.20157 4.33934 4.39946 4.46317 4.52839 4.61069 4.69156 4.79161 4.82753 4.86618 4.89063 4.93248 4.99725 5.09368 5.18021 5.26247 5.40047 5.61062 5.67682 5.82609 6.29037 6.43427 6.96137 7.14450 7.72328 8.06767 8.88675 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.003907 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.502264 B = 7164.046617 C = 8048.343177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.065 4.065 3 Si 1.098 2.902 4 H -0.262 1.262 5 H -0.317 1.317 6 H -0.259 1.259 7 C -0.331 4.331 8 H 0.016 0.984 9 N -0.611 5.611 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.128 3.872 13 N -0.588 5.588 14 C 0.517 3.483 15 O -0.585 6.585 16 C -0.101 4.101 17 C -0.097 4.097 18 C -0.088 4.088 19 C -0.107 4.107 20 C -0.079 4.079 21 C -0.082 4.082 22 Cl -0.050 7.050 23 C 0.103 3.897 24 F -0.134 7.134 25 C 0.091 3.909 26 C 0.091 3.909 27 H 0.244 0.756 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.014 0.986 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.131 0.869 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.169 0.831 38 H 0.174 0.826 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.060 0.940 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.950 -0.575 15.002 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.923 3.077 4 H -0.188 1.188 5 H -0.247 1.247 6 H -0.184 1.184 7 C -0.461 4.461 8 H 0.034 0.966 9 N -0.335 5.335 10 C 0.032 3.968 11 C -0.195 4.195 12 C 0.007 3.993 13 N -0.318 5.318 14 C 0.306 3.694 15 O -0.465 6.465 16 C -0.141 4.141 17 C -0.098 4.098 18 C -0.107 4.107 19 C -0.125 4.125 20 C -0.097 4.097 21 C -0.110 4.110 22 Cl -0.021 7.021 23 C 0.083 3.917 24 F -0.112 7.112 25 C -0.034 4.034 26 C -0.034 4.034 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.033 0.967 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.149 0.851 35 H 0.130 0.870 36 H 0.149 0.851 37 H 0.186 0.814 38 H 0.191 0.809 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.078 0.922 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.755 0.407 15.236 17.577 hybrid contribution -0.417 -2.153 -0.378 2.225 sum 8.337 -1.746 14.858 17.127 Atomic orbital electron populations 1.70973 1.07817 1.28319 1.52664 1.27370 0.96200 1.04436 0.97946 0.83489 0.74464 0.72051 0.77716 1.18789 1.24678 1.18396 1.20008 0.90456 0.94128 1.41466 0.96561 1.43992 1.09573 1.31727 1.48184 1.20369 0.94248 0.87304 0.94889 1.21580 0.99120 1.01012 0.97830 1.20665 0.99333 0.87214 0.92100 1.47491 1.44666 1.08457 1.31235 1.20723 0.77797 0.90481 0.80351 1.90632 1.57724 1.29761 1.68419 1.20698 1.00367 0.96696 0.96290 1.19444 0.95546 1.02295 0.92560 1.21296 0.91680 0.97297 1.00390 1.21500 1.01809 0.97623 0.91597 1.21324 0.91960 0.97634 0.98811 1.21091 0.94674 1.07265 0.87968 1.98368 1.88144 1.90173 1.25377 1.17303 0.77389 1.03183 0.93834 1.91471 1.30648 1.94127 1.94969 1.21995 0.98717 0.83639 0.99014 1.22809 0.97789 0.91917 0.90848 0.94746 0.94739 0.90528 0.89811 0.96724 0.87528 0.91628 0.85142 0.87027 0.85103 0.81372 0.80900 0.87400 0.87704 0.92204 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.27 13.70 21.65 0.30 -58.97 16 2 C -0.07 -3.68 5.14 84.86 0.44 -3.24 16 3 Si 1.10 48.71 24.44 68.60 1.68 50.38 16 4 H -0.26 -10.15 6.75 99.48 0.67 -9.48 16 5 H -0.32 -14.96 7.11 99.48 0.71 -14.25 16 6 H -0.26 -10.28 6.41 99.48 0.64 -9.64 16 7 C -0.33 -18.23 9.54 84.04 0.80 -17.43 16 8 H 0.02 1.04 8.06 -2.91 -0.02 1.02 16 9 N -0.61 -26.47 2.34 -699.17 -1.64 -28.11 16 10 C 0.16 5.70 5.59 87.02 0.49 6.19 16 11 C -0.15 -5.30 5.63 28.85 0.16 -5.13 16 12 C 0.13 3.81 5.69 84.23 0.48 4.29 16 13 N -0.59 -18.63 2.46 -831.22 -2.04 -20.67 16 14 C 0.52 18.62 7.66 87.66 0.67 19.30 16 15 O -0.58 -25.43 15.47 -3.04 -0.05 -25.48 16 16 C -0.10 -3.02 4.16 29.10 0.12 -2.90 16 17 C -0.10 -2.95 4.38 -19.83 -0.09 -3.03 16 18 C -0.09 -2.53 9.68 22.27 0.22 -2.32 16 19 C -0.11 -2.39 10.04 22.27 0.22 -2.16 16 20 C -0.08 -1.65 9.83 22.29 0.22 -1.43 16 21 C -0.08 -2.10 6.33 22.36 0.14 -1.96 16 22 Cl -0.05 -1.13 28.62 -2.72 -0.08 -1.21 16 23 C 0.10 3.04 7.22 22.39 0.16 3.20 16 24 F -0.13 -4.04 16.14 44.97 0.73 -3.31 16 25 C 0.09 2.37 5.05 87.55 0.44 2.81 16 26 C 0.09 3.22 4.52 86.56 0.39 3.61 16 27 H 0.24 15.57 8.73 -92.71 -0.81 14.76 16 28 H 0.03 1.34 8.02 -2.39 -0.02 1.32 16 29 H 0.08 2.16 7.58 -2.38 -0.02 2.15 16 30 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.01 0.63 7.91 -2.38 -0.02 0.62 16 32 H 0.11 2.30 8.05 -2.39 -0.02 2.28 16 33 H 0.07 2.15 7.12 -2.38 -0.02 2.14 16 34 H 0.13 3.06 7.02 -2.39 -0.02 3.05 16 35 H 0.11 3.43 7.22 -2.39 -0.02 3.42 16 36 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 37 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 38 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 39 H 0.11 2.11 7.73 -2.39 -0.02 2.10 16 40 H 0.10 2.10 6.38 -2.39 -0.02 2.08 16 41 H 0.06 1.94 5.81 -2.39 -0.01 1.93 16 42 H 0.05 2.00 4.74 -2.39 -0.01 1.99 16 Total: -1.00 -75.35 350.58 4.67 -70.68 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.91 Total: 16.90 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 4.87 Total: -0.20 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -3.38 Total: -107.75 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.05 Total: -25.48 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.73 Total: -3.31 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 1.68 Total: 50.38 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -75.35 4.67 -70.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982031614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.242 kcal (2) G-P(sol) polarization free energy of solvation -75.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds