Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 110.89060 * 2 1 4 4 C 1.55130 * 111.19152 * 236.07069 * 2 1 3 5 5 N 1.47430 * 104.72208 * 279.19306 * 4 2 1 6 6 C 1.34777 * 125.64445 * 155.81459 * 5 4 2 7 7 O 1.21565 * 120.00573 * 5.04348 * 6 5 4 8 8 C 1.47730 * 119.99500 * 185.04347 * 6 5 4 9 9 C 1.39661 * 120.11635 * 352.09225 * 8 6 5 10 10 C 1.37830 * 119.90623 * 180.02562 * 9 8 6 11 11 C 1.38641 * 120.13322 * 0.02562 * 10 9 8 12 12 F 1.35105 * 119.88545 * 180.27025 * 11 10 9 13 13 C 1.38740 * 120.23009 * 359.97438 * 11 10 9 14 14 Cl 1.73601 * 119.95238 * 179.97438 * 13 11 10 15 15 C 1.37967 * 120.09054 * 0.02562 * 13 11 10 16 16 C 1.47015 * 108.70345 * 335.55216 * 5 4 2 17 17 C 1.54324 * 107.27344 * 1.28744 * 16 5 4 18 18 H 1.09005 * 110.71911 * 263.83653 * 17 16 5 19 19 N 1.46496 * 110.72459 * 140.55560 * 17 16 5 20 20 C 1.36932 * 119.99901 * 86.45414 * 19 17 16 21 21 H 1.08005 * 120.00372 * 0.02562 * 20 19 17 22 22 C 1.38819 * 120.00175 * 180.02562 * 20 19 17 23 23 N 1.31615 * 119.99868 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99684 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46858 * 90.00100 * 24 22 20 26 26 H 1.48496 * 109.46897 * 209.99836 * 24 22 20 27 27 H 1.48504 * 109.47429 * 330.00184 * 24 22 20 28 28 H 1.09006 * 109.47011 * 296.11953 * 1 2 3 29 29 H 1.08997 * 109.47049 * 56.11103 * 1 2 3 30 30 H 1.08998 * 109.47411 * 176.11978 * 1 2 3 31 31 H 1.08992 * 109.46834 * 183.87859 * 3 2 1 32 32 H 1.08995 * 109.47152 * 303.88926 * 3 2 1 33 33 H 1.08997 * 109.46528 * 63.88338 * 3 2 1 34 34 H 1.08998 * 110.49993 * 160.34975 * 4 2 1 35 35 H 1.09006 * 110.34530 * 37.95453 * 4 2 1 36 36 H 1.08001 * 120.04613 * 0.02562 * 9 8 6 37 37 H 1.08004 * 119.93341 * 180.02562 * 10 9 8 38 38 H 1.08005 * 120.06357 * 179.97438 * 15 13 11 39 39 H 1.09002 * 109.88370 * 120.70336 * 16 5 4 40 40 H 1.08998 * 109.88593 * 241.71318 * 16 5 4 41 41 H 0.97006 * 120.00169 * 266.45617 * 19 17 16 42 42 H 0.97002 * 119.99597 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0908 -0.8073 -1.2001 5 7 2.0138 -2.2162 -0.7726 6 6 1.9469 -3.2834 -1.5931 7 8 2.0392 -3.1323 -2.7957 8 6 1.7615 -4.6368 -1.0307 9 6 1.8202 -4.8359 0.3504 10 6 1.6471 -6.1005 0.8704 11 6 1.4154 -7.1749 0.0253 12 9 1.2410 -8.4115 0.5407 13 6 1.3559 -6.9835 -1.3476 14 17 1.0661 -8.3339 -2.3993 15 6 1.5279 -5.7216 -1.8782 16 6 2.0284 -2.2645 0.6967 17 6 2.0861 -0.8076 1.2025 18 1 3.1133 -0.5157 1.4210 19 7 1.2343 -0.6342 2.3817 20 6 1.7297 -0.9031 3.6296 21 1 2.7485 -1.2427 3.7446 22 6 0.9224 -0.7393 4.7470 23 7 1.3985 -0.9982 5.9464 24 14 -0.8394 -0.1512 4.5482 25 1 -1.7362 -1.3228 4.3795 26 1 -1.2453 0.6131 5.7549 27 1 -0.9375 0.7234 3.3520 28 1 -0.3633 0.4525 0.9228 29 1 -0.3633 0.5730 -0.8531 30 1 -0.3634 -1.0253 -0.0695 31 1 3.1630 1.4032 -0.0695 32 1 1.6698 1.9732 -0.8530 33 1 1.7824 1.9301 0.9227 34 1 3.1252 -0.5271 -1.3987 35 1 1.4764 -0.6456 -2.0859 36 1 2.0010 -4.0000 1.0100 37 1 1.6920 -6.2549 1.9384 38 1 1.4820 -5.5731 -2.9470 39 1 1.1217 -2.7476 1.0608 40 1 2.9047 -2.8138 1.0408 41 1 0.3194 -0.3288 2.2785 42 1 0.8345 -0.8834 6.7272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996220118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = -17.531204 kcal Electronic energy + Delta-G solvation = -27654.588954 eV Core-core repulsion = 23576.449156 eV Total energy + Delta-G solvation = -4078.139798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.23150 -40.78803 -39.05548 -37.86725 -36.76427 -34.49608 -33.56700 -31.39668 -31.25712 -30.83796 -28.30650 -27.27650 -26.61092 -24.52197 -23.39195 -23.14002 -21.36205 -20.10006 -19.13073 -17.87153 -17.76110 -17.52351 -16.80414 -16.16480 -15.95063 -15.72184 -14.92356 -14.81601 -14.46217 -14.28757 -14.14904 -13.90018 -13.61301 -13.52437 -13.23180 -13.15101 -12.77102 -12.68293 -12.41088 -12.25994 -11.87572 -11.75343 -11.63493 -11.49031 -11.33729 -11.13764 -11.11278 -10.71518 -10.56827 -10.40434 -10.12665 -10.01210 -9.71252 -9.33706 -9.11622 -8.99664 -8.57149 -7.51586 -5.95465 -3.34077 0.35859 0.77318 1.68424 2.54160 2.93361 3.23069 3.25908 3.33975 3.44946 3.74390 4.24882 4.38024 4.41819 4.60715 4.75235 4.81923 4.85298 4.88961 5.19859 5.24496 5.32837 5.40763 5.47930 5.48753 5.56338 5.58126 5.70437 5.77229 5.80605 5.85854 5.90312 5.91205 6.02873 6.11138 6.14037 6.28249 6.34015 6.38436 6.44787 6.58967 7.49088 7.78600 8.08097 8.23165 8.99686 9.71807 9.89547 11.21865 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.003676 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.024812 B = 7615.844770 C = 9366.123294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.130 4.130 4 C 0.120 3.880 5 N -0.603 5.603 6 C 0.574 3.426 7 O -0.544 6.544 8 C -0.129 4.129 9 C -0.086 4.086 10 C -0.145 4.145 11 C 0.131 3.869 12 F -0.124 7.124 13 C -0.088 4.088 14 Cl -0.049 7.049 15 C -0.027 4.027 16 C 0.057 3.943 17 C 0.185 3.815 18 H 0.078 0.922 19 N -0.735 5.735 20 C -0.258 4.258 21 H 0.093 0.907 22 C 0.014 3.986 23 N -0.926 5.926 24 Si 0.877 3.123 25 H -0.282 1.282 26 H -0.289 1.289 27 H -0.276 1.276 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.187 0.813 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.367 0.633 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.291 -6.114 -14.250 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 C -0.188 4.188 4 C -0.003 4.003 5 N -0.335 5.335 6 C 0.364 3.636 7 O -0.423 6.423 8 C -0.133 4.133 9 C -0.103 4.103 10 C -0.164 4.164 11 C 0.110 3.890 12 F -0.102 7.102 13 C -0.115 4.115 14 Cl -0.020 7.020 15 C -0.047 4.047 16 C -0.068 4.068 17 C 0.073 3.927 18 H 0.096 0.904 19 N -0.379 5.379 20 C -0.387 4.387 21 H 0.111 0.889 22 C -0.183 4.183 23 N -0.572 5.572 24 Si 0.707 3.293 25 H -0.209 1.209 26 H -0.215 1.215 27 H -0.202 1.202 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.203 0.797 37 H 0.173 0.827 38 H 0.172 0.828 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.203 0.797 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.433 -6.304 -14.752 16.048 hybrid contribution -1.384 -0.207 0.149 1.408 sum -0.952 -6.511 -14.603 16.017 Atomic orbital electron populations 1.21711 0.93872 1.01986 1.01883 1.22068 0.96275 0.95770 0.94980 1.21660 1.00662 0.94225 1.02263 1.22392 1.01077 0.79271 0.97515 1.48310 1.71309 1.06181 1.07746 1.17655 0.77136 0.83285 0.85566 1.90769 1.51516 1.85789 1.14256 1.19874 1.05998 0.93691 0.93717 1.23127 0.92763 0.99051 0.95405 1.21279 1.02835 0.91158 1.01141 1.17755 1.00319 0.80951 0.89961 1.91557 1.92238 1.39348 1.87052 1.20799 1.10199 0.90844 0.89705 1.98387 1.94576 1.43727 1.65270 1.21002 0.93725 0.88477 1.01448 1.23777 1.01813 1.03102 0.78107 1.21229 0.95866 0.89446 0.86116 0.90414 1.42874 1.12303 1.80574 1.02112 1.19063 0.98869 1.39117 0.81700 0.88894 1.24656 0.97656 1.00836 0.95110 1.69685 1.36184 1.53948 0.97365 0.86690 0.86511 0.78886 0.77193 1.20859 1.21512 1.20204 0.91649 0.92668 0.92504 0.92352 0.92855 0.91368 0.91008 0.90477 0.79710 0.82733 0.82842 0.89627 0.90571 0.79666 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.94 37.16 0.30 -1.54 16 2 C -0.09 -1.17 0.87 -152.24 -0.13 -1.31 16 3 C -0.13 -1.54 8.68 37.16 0.32 -1.22 16 4 C 0.12 1.52 5.83 -2.41 -0.01 1.50 16 5 N -0.60 -8.28 3.31 -175.35 -0.58 -8.86 16 6 C 0.57 8.47 7.80 -12.38 -0.10 8.37 16 7 O -0.54 -9.32 16.67 5.31 0.09 -9.23 16 8 C -0.13 -1.69 5.87 -104.97 -0.62 -2.31 16 9 C -0.09 -1.04 8.59 -39.20 -0.34 -1.38 16 10 C -0.15 -1.66 10.01 -39.58 -0.40 -2.06 16 11 C 0.13 1.57 7.28 -39.25 -0.29 1.29 16 12 F -0.12 -1.53 16.83 2.25 0.04 -1.49 16 13 C -0.09 -1.05 6.32 -39.50 -0.25 -1.30 16 14 Cl -0.05 -0.54 28.60 -51.86 -1.48 -2.02 16 15 C -0.03 -0.33 9.37 -39.16 -0.37 -0.70 16 16 C 0.06 0.80 4.31 -3.07 -0.01 0.79 16 17 C 0.19 2.90 2.85 -66.09 -0.19 2.71 16 18 H 0.08 1.25 8.02 -51.93 -0.42 0.83 16 19 N -0.74 -14.57 4.88 -51.65 -0.25 -14.82 16 20 C -0.26 -6.32 10.46 -15.06 -0.16 -6.47 16 21 H 0.09 2.44 8.06 -52.48 -0.42 2.01 16 22 C 0.01 0.38 5.50 -17.43 -0.10 0.29 16 23 N -0.93 -26.74 13.97 55.49 0.78 -25.96 16 24 Si 0.88 20.11 27.74 -169.99 -4.71 15.39 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.28 -5.87 6.52 56.52 0.37 -5.50 16 28 H 0.06 0.97 6.34 -51.93 -0.33 0.64 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.79 7.91 -51.93 -0.41 0.38 16 31 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.85 7.99 -51.93 -0.41 0.43 16 35 H 0.08 0.98 8.01 -51.93 -0.42 0.56 16 36 H 0.19 2.26 2.76 -57.44 -0.16 2.10 16 37 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 38 H 0.15 1.82 7.67 -52.48 -0.40 1.42 16 39 H 0.09 1.26 6.54 -51.93 -0.34 0.92 16 40 H 0.08 1.01 6.80 -51.93 -0.35 0.65 16 41 H 0.37 7.29 3.12 -40.82 -0.13 7.16 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -28.63 356.49 -8.16 -36.79 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.07 Total: 8.17 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.33 Total: -3.34 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.06 Total: -49.64 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.71 Total: 15.39 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.48 Total: -2.02 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.63 -8.16 -36.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996220118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.258 kcal (2) G-P(sol) polarization free energy of solvation -28.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds