Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 110.89060 * 2 1 4 4 C 1.55130 * 111.19152 * 236.07069 * 2 1 3 5 5 N 1.47430 * 104.72208 * 279.19306 * 4 2 1 6 6 C 1.34777 * 125.64445 * 155.81459 * 5 4 2 7 7 O 1.21565 * 120.00573 * 5.04348 * 6 5 4 8 8 C 1.47730 * 119.99500 * 185.04347 * 6 5 4 9 9 C 1.39661 * 120.11635 * 352.09225 * 8 6 5 10 10 C 1.37830 * 119.90623 * 180.02562 * 9 8 6 11 11 C 1.38641 * 120.13322 * 0.02562 * 10 9 8 12 12 F 1.35105 * 119.88545 * 180.27025 * 11 10 9 13 13 C 1.38740 * 120.23009 * 359.97438 * 11 10 9 14 14 Cl 1.73601 * 119.95238 * 179.97438 * 13 11 10 15 15 C 1.37967 * 120.09054 * 0.02562 * 13 11 10 16 16 C 1.47015 * 108.70345 * 335.55216 * 5 4 2 17 17 C 1.54324 * 107.27344 * 1.28744 * 16 5 4 18 18 H 1.09005 * 110.71911 * 263.83653 * 17 16 5 19 19 N 1.46496 * 110.72459 * 140.55560 * 17 16 5 20 20 C 1.36932 * 119.99901 * 86.45414 * 19 17 16 21 21 H 1.08005 * 120.00372 * 0.02562 * 20 19 17 22 22 C 1.38819 * 120.00175 * 180.02562 * 20 19 17 23 23 N 1.31615 * 119.99868 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99684 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46858 * 90.00100 * 24 22 20 26 26 H 1.48496 * 109.46897 * 209.99836 * 24 22 20 27 27 H 1.48504 * 109.47429 * 330.00184 * 24 22 20 28 28 H 1.09006 * 109.47011 * 296.11953 * 1 2 3 29 29 H 1.08997 * 109.47049 * 56.11103 * 1 2 3 30 30 H 1.08998 * 109.47411 * 176.11978 * 1 2 3 31 31 H 1.08992 * 109.46834 * 183.87859 * 3 2 1 32 32 H 1.08995 * 109.47152 * 303.88926 * 3 2 1 33 33 H 1.08997 * 109.46528 * 63.88338 * 3 2 1 34 34 H 1.08998 * 110.49993 * 160.34975 * 4 2 1 35 35 H 1.09006 * 110.34530 * 37.95453 * 4 2 1 36 36 H 1.08001 * 120.04613 * 0.02562 * 9 8 6 37 37 H 1.08004 * 119.93341 * 180.02562 * 10 9 8 38 38 H 1.08005 * 120.06357 * 179.97438 * 15 13 11 39 39 H 1.09002 * 109.88370 * 120.70336 * 16 5 4 40 40 H 1.08998 * 109.88593 * 241.71318 * 16 5 4 41 41 H 0.97006 * 120.00169 * 266.45617 * 19 17 16 42 42 H 0.97002 * 119.99597 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0908 -0.8073 -1.2001 5 7 2.0138 -2.2162 -0.7726 6 6 1.9469 -3.2834 -1.5931 7 8 2.0392 -3.1323 -2.7957 8 6 1.7615 -4.6368 -1.0307 9 6 1.8202 -4.8359 0.3504 10 6 1.6471 -6.1005 0.8704 11 6 1.4154 -7.1749 0.0253 12 9 1.2410 -8.4115 0.5407 13 6 1.3559 -6.9835 -1.3476 14 17 1.0661 -8.3339 -2.3993 15 6 1.5279 -5.7216 -1.8782 16 6 2.0284 -2.2645 0.6967 17 6 2.0861 -0.8076 1.2025 18 1 3.1133 -0.5157 1.4210 19 7 1.2343 -0.6342 2.3817 20 6 1.7297 -0.9031 3.6296 21 1 2.7485 -1.2427 3.7446 22 6 0.9224 -0.7393 4.7470 23 7 1.3985 -0.9982 5.9464 24 14 -0.8394 -0.1512 4.5482 25 1 -1.7362 -1.3228 4.3795 26 1 -1.2453 0.6131 5.7549 27 1 -0.9375 0.7234 3.3520 28 1 -0.3633 0.4525 0.9228 29 1 -0.3633 0.5730 -0.8531 30 1 -0.3634 -1.0253 -0.0695 31 1 3.1630 1.4032 -0.0695 32 1 1.6698 1.9732 -0.8530 33 1 1.7824 1.9301 0.9227 34 1 3.1252 -0.5271 -1.3987 35 1 1.4764 -0.6456 -2.0859 36 1 2.0010 -4.0000 1.0100 37 1 1.6920 -6.2549 1.9384 38 1 1.4820 -5.5731 -2.9470 39 1 1.1217 -2.7476 1.0608 40 1 2.9047 -2.8138 1.0408 41 1 0.3194 -0.3288 2.2785 42 1 0.8345 -0.8834 6.7272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996220118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -32.802396 kcal Electronic energy + Delta-G solvation = -27655.251163 eV Core-core repulsion = 23576.449156 eV Total energy + Delta-G solvation = -4078.802007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.20207 -41.90460 -40.12260 -39.02086 -37.69436 -36.01714 -34.85531 -33.10141 -32.26116 -31.87809 -29.68793 -28.32182 -27.63500 -25.96186 -24.59878 -24.21908 -22.67963 -21.18339 -20.46875 -19.42514 -18.84707 -18.58607 -17.82661 -17.31084 -16.96412 -16.88374 -16.48712 -15.92161 -15.85096 -15.43007 -15.18393 -15.10329 -14.89428 -14.64024 -14.32117 -14.25812 -14.14331 -13.85664 -13.58800 -13.36663 -13.17787 -12.95486 -12.80867 -12.72670 -12.60451 -12.34736 -12.17049 -12.10508 -11.91931 -11.75210 -11.59661 -11.36359 -11.19612 -10.85566 -10.29796 -9.98446 -9.69393 -9.30807 -7.97370 -5.31420 -0.64084 -0.17564 0.75246 1.41376 1.42721 1.47778 1.50305 1.82924 2.41273 2.51700 2.78533 3.14368 3.31559 3.43913 3.53787 3.60459 3.71207 3.83164 3.88478 4.05623 4.21068 4.24266 4.31479 4.39750 4.55112 4.62220 4.67336 4.72749 4.79265 4.84325 4.85722 4.93310 4.99465 5.06526 5.09888 5.17940 5.22819 5.38431 5.40078 5.51098 5.84456 6.26037 6.35003 6.93801 7.12395 7.86906 8.04719 9.23258 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.003676 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.024812 B = 7615.844770 C = 9366.123294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 C -0.128 4.128 4 C 0.121 3.879 5 N -0.600 5.600 6 C 0.574 3.426 7 O -0.570 6.570 8 C -0.138 4.138 9 C -0.083 4.083 10 C -0.142 4.142 11 C 0.128 3.872 12 F -0.125 7.125 13 C -0.089 4.089 14 Cl -0.041 7.041 15 C -0.026 4.026 16 C 0.066 3.934 17 C 0.176 3.824 18 H 0.075 0.925 19 N -0.736 5.736 20 C -0.226 4.226 21 H 0.069 0.931 22 C -0.052 4.052 23 N -0.979 5.979 24 Si 0.934 3.066 25 H -0.281 1.281 26 H -0.303 1.303 27 H -0.250 1.250 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.185 0.815 37 H 0.171 0.829 38 H 0.157 0.843 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.370 0.630 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 -5.883 -16.115 17.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.081 4.081 3 C -0.186 4.186 4 C -0.001 4.001 5 N -0.331 5.331 6 C 0.365 3.635 7 O -0.451 6.451 8 C -0.142 4.142 9 C -0.101 4.101 10 C -0.160 4.160 11 C 0.108 3.892 12 F -0.104 7.104 13 C -0.117 4.117 14 Cl -0.012 7.012 15 C -0.045 4.045 16 C -0.058 4.058 17 C 0.066 3.934 18 H 0.093 0.907 19 N -0.380 5.380 20 C -0.357 4.357 21 H 0.087 0.913 22 C -0.244 4.244 23 N -0.629 5.629 24 Si 0.762 3.238 25 H -0.207 1.207 26 H -0.230 1.230 27 H -0.174 1.174 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.201 0.799 37 H 0.188 0.812 38 H 0.175 0.825 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.206 0.794 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.079 -6.062 -16.687 17.754 hybrid contribution -1.132 -0.330 0.639 1.341 sum -1.210 -6.392 -16.048 17.317 Atomic orbital electron populations 1.21712 0.93804 1.01807 1.02095 1.22019 0.96273 0.96330 0.93526 1.21653 1.01387 0.93165 1.02369 1.22480 1.01980 0.78398 0.97262 1.48289 1.70833 1.06634 1.07357 1.17830 0.76623 0.83837 0.85233 1.90755 1.52928 1.86205 1.15252 1.19816 1.06998 0.93184 0.94154 1.23051 0.92806 0.99284 0.94941 1.21428 1.02024 0.90643 1.01923 1.17846 1.00300 0.81008 0.90093 1.91556 1.92249 1.39483 1.87074 1.20832 1.09941 0.91011 0.89880 1.98391 1.94497 1.43253 1.65036 1.21018 0.93535 0.88403 1.01559 1.23538 1.02164 1.01732 0.78412 1.21421 0.95221 0.91009 0.85759 0.90709 1.42823 1.12875 1.80612 1.01737 1.19048 0.97510 1.35732 0.83362 0.91272 1.25305 1.01558 1.02635 0.94908 1.69848 1.37651 1.57151 0.98224 0.85743 0.81986 0.78640 0.77393 1.20703 1.23018 1.17436 0.93079 0.90434 0.93212 0.91420 0.90640 0.93033 0.89697 0.89947 0.79863 0.81188 0.82548 0.90034 0.89607 0.79381 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 7.94 71.98 0.57 -2.73 16 2 C -0.08 -1.90 0.87 -50.71 -0.04 -1.95 16 3 C -0.13 -2.67 8.68 71.98 0.62 -2.05 16 4 C 0.12 2.73 5.83 86.93 0.51 3.24 16 5 N -0.60 -15.28 3.31 -826.96 -2.74 -18.02 16 6 C 0.57 16.03 7.80 86.75 0.68 16.71 16 7 O -0.57 -18.71 16.67 -3.92 -0.07 -18.78 16 8 C -0.14 -3.42 5.87 -20.09 -0.12 -3.54 16 9 C -0.08 -1.90 8.59 22.52 0.19 -1.70 16 10 C -0.14 -3.01 10.01 22.27 0.22 -2.79 16 11 C 0.13 2.89 7.28 22.49 0.16 3.05 16 12 F -0.13 -2.91 16.83 44.97 0.76 -2.16 16 13 C -0.09 -2.00 6.32 22.33 0.14 -1.86 16 14 Cl -0.04 -0.85 28.60 -2.72 -0.08 -0.93 16 15 C -0.03 -0.60 9.37 22.54 0.21 -0.39 16 16 C 0.07 1.76 4.31 86.73 0.37 2.13 16 17 C 0.18 5.22 2.85 46.18 0.13 5.35 16 18 H 0.07 2.30 8.02 -2.38 -0.02 2.28 16 19 N -0.74 -28.23 4.88 -317.31 -1.55 -29.78 16 20 C -0.23 -11.02 10.46 84.04 0.88 -10.14 16 21 H 0.07 3.67 8.06 -2.91 -0.02 3.65 16 22 C -0.05 -2.76 5.50 84.86 0.47 -2.29 16 23 N -0.98 -57.96 13.97 21.65 0.30 -57.66 16 24 Si 0.93 41.35 27.74 68.60 1.90 43.26 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 27 H -0.25 -9.81 6.52 99.48 0.65 -9.16 16 28 H 0.05 1.39 6.34 -2.38 -0.02 1.37 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.26 7.91 -2.39 -0.02 1.24 16 31 H 0.07 1.28 8.07 -2.39 -0.02 1.26 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.74 7.99 -2.39 -0.02 1.72 16 35 H 0.08 1.84 8.01 -2.38 -0.02 1.82 16 36 H 0.19 4.22 2.76 -7.56 -0.02 4.20 16 37 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 38 H 0.16 3.53 7.67 -2.91 -0.02 3.51 16 39 H 0.08 2.28 6.54 -2.39 -0.02 2.26 16 40 H 0.09 2.14 6.80 -2.39 -0.02 2.12 16 41 H 0.37 13.97 3.12 -92.70 -0.29 13.68 16 42 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -61.28 356.49 4.25 -57.03 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.71 Total: 25.98 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.00 Total: 1.05 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -3.98 Total: -105.46 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.07 Total: -18.78 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.76 Total: -2.16 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.90 Total: 43.26 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -61.28 4.25 -57.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996220118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.231 kcal (2) G-P(sol) polarization free energy of solvation -61.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds