Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 110.88130 * 2 1 4 4 C 1.55122 * 111.19651 * 236.06548 * 2 1 3 5 5 N 1.47426 * 104.72324 * 279.19132 * 4 2 1 6 6 C 1.34773 * 125.64962 * 155.81702 * 5 4 2 7 7 O 1.21569 * 120.00216 * 354.40009 * 6 5 4 8 8 C 1.47694 * 119.99965 * 174.67545 * 6 5 4 9 9 C 1.39671 * 120.16043 * 315.65788 * 8 6 5 10 10 C 1.37858 * 119.89959 * 179.78853 * 9 8 6 11 11 C 1.38450 * 120.23002 * 0.48589 * 10 9 8 12 12 C 1.38296 * 120.32786 * 359.74566 * 11 10 9 13 13 Cl 1.73601 * 119.95161 * 179.97438 * 12 11 10 14 14 C 1.38440 * 120.09269 * 0.02562 * 12 11 10 15 15 F 1.35097 * 120.11168 * 179.97438 * 14 12 11 16 16 C 1.47026 * 108.69939 * 335.55365 * 5 4 2 17 17 C 1.54319 * 107.27212 * 1.28657 * 16 5 4 18 18 H 1.09005 * 110.72183 * 263.83465 * 17 16 5 19 19 N 1.46498 * 110.71905 * 140.73781 * 17 16 5 20 20 C 1.36937 * 120.00357 * 86.45253 * 19 17 16 21 21 H 1.07992 * 119.99946 * 0.02562 * 20 19 17 22 22 C 1.38810 * 119.99831 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00430 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99703 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47190 * 59.99952 * 24 22 20 26 26 H 1.48503 * 109.47447 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47490 * 300.00361 * 24 22 20 28 28 H 1.08992 * 109.47539 * 296.11921 * 1 2 3 29 29 H 1.09003 * 109.46835 * 56.12757 * 1 2 3 30 30 H 1.09005 * 109.46849 * 176.11866 * 1 2 3 31 31 H 1.08995 * 109.47188 * 183.87976 * 3 2 1 32 32 H 1.09000 * 109.46919 * 303.87677 * 3 2 1 33 33 H 1.08998 * 109.47626 * 63.87280 * 3 2 1 34 34 H 1.08998 * 110.50106 * 160.34652 * 4 2 1 35 35 H 1.09003 * 110.34416 * 37.95265 * 4 2 1 36 36 H 1.07997 * 120.05012 * 0.02562 * 9 8 6 37 37 H 1.08001 * 119.88064 * 180.21449 * 10 9 8 38 38 H 1.08005 * 119.83214 * 179.72100 * 11 10 9 39 39 H 1.08996 * 109.88180 * 120.70797 * 16 5 4 40 40 H 1.08995 * 109.87658 * 241.71643 * 16 5 4 41 41 H 0.97002 * 119.99393 * 266.44951 * 19 17 16 42 42 H 0.96997 * 120.00025 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0909 -0.8074 -1.1999 5 7 2.0140 -2.2162 -0.7723 6 6 1.9474 -3.2835 -1.5926 7 8 1.8448 -3.1220 -2.7931 8 6 1.9928 -4.6493 -1.0324 9 6 2.9204 -4.9696 -0.0385 10 6 2.9552 -6.2450 0.4837 11 6 2.0804 -7.2125 0.0193 12 6 1.1614 -6.9070 -0.9679 13 17 0.0696 -8.1278 -1.5435 14 6 1.1115 -5.6293 -1.4985 15 9 0.2142 -5.3305 -2.4632 16 6 2.0286 -2.2642 0.6971 17 6 2.0861 -0.8073 1.2026 18 1 3.1133 -0.5152 1.4212 19 7 1.2375 -0.6349 2.3843 20 6 1.7368 -0.9033 3.6309 21 1 2.7561 -1.2417 3.7429 22 6 0.9328 -0.7393 4.7505 23 7 -0.3092 -0.3255 4.6141 24 14 1.6140 -1.1047 6.4510 25 1 2.7815 -0.2261 6.7159 26 1 0.5633 -0.8531 7.4698 27 1 2.0387 -2.5260 6.5193 28 1 -0.3634 0.4524 0.9226 29 1 -0.3633 0.5728 -0.8533 30 1 -0.3633 -1.0254 -0.0696 31 1 3.1628 1.4035 -0.0695 32 1 1.6697 1.9731 -0.8532 33 1 1.7821 1.9304 0.9226 34 1 3.1254 -0.5271 -1.3985 35 1 1.4766 -0.6458 -2.0857 36 1 3.6067 -4.2183 0.3231 37 1 3.6702 -6.4914 1.2547 38 1 2.1163 -8.2109 0.4298 39 1 1.1220 -2.7475 1.0611 40 1 2.9050 -2.8134 1.0412 41 1 0.3220 -0.3306 2.2836 42 1 -0.8710 -0.2113 5.3965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996239578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = -55.922984 kcal Electronic energy + Delta-G solvation = -27835.143575 eV Core-core repulsion = 23755.338984 eV Total energy + Delta-G solvation = -4079.804591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.20032 -41.66300 -40.07458 -39.09312 -37.64454 -35.87639 -34.71681 -32.69572 -32.32909 -31.62455 -29.20644 -28.32674 -27.72651 -25.88527 -24.95530 -23.85938 -22.87899 -21.00456 -20.14779 -19.11363 -18.86849 -18.37039 -17.97559 -17.33503 -16.95934 -16.88440 -16.37412 -16.11409 -15.76056 -15.65406 -15.41515 -14.91601 -14.62877 -14.53552 -14.27759 -14.15607 -13.82723 -13.63594 -13.50514 -13.34541 -12.97697 -12.82843 -12.78626 -12.67159 -12.59724 -12.52681 -12.22056 -12.12460 -12.07626 -11.86933 -11.47923 -11.33406 -11.18883 -10.86443 -10.22272 -9.89796 -9.70624 -9.00465 -7.89043 -5.18245 -0.45133 -0.20040 0.78544 1.43778 1.54265 1.55536 1.61469 1.81592 2.34790 2.61258 2.83213 3.12480 3.41806 3.50684 3.70206 3.74576 3.80228 3.83388 4.00791 4.15551 4.25591 4.29892 4.40126 4.43896 4.61217 4.67930 4.68906 4.77454 4.82655 4.86390 4.96285 5.00674 5.07542 5.09002 5.13119 5.23079 5.25335 5.41992 5.48817 5.51798 5.60262 6.30455 6.34115 6.87916 7.40239 8.12987 8.36503 9.34041 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010545 B = 0.003853 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.652735 B = 7265.385557 C = 8938.314752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.079 4.079 3 C -0.124 4.124 4 C 0.119 3.881 5 N -0.599 5.599 6 C 0.570 3.430 7 O -0.572 6.572 8 C -0.168 4.168 9 C -0.053 4.053 10 C -0.104 4.104 11 C -0.052 4.052 12 C -0.089 4.089 13 Cl -0.046 7.046 14 C 0.125 3.875 15 F -0.134 7.134 16 C 0.082 3.918 17 C 0.175 3.825 18 H 0.078 0.922 19 N -0.722 5.722 20 C -0.238 4.238 21 H 0.085 0.915 22 C -0.070 4.070 23 N -0.970 5.970 24 Si 0.967 3.033 25 H -0.278 1.278 26 H -0.305 1.305 27 H -0.275 1.275 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.162 0.838 37 H 0.189 0.811 38 H 0.182 0.818 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.379 0.621 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.921 -10.741 -9.331 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.080 4.080 3 C -0.181 4.181 4 C -0.003 4.003 5 N -0.330 5.330 6 C 0.359 3.641 7 O -0.452 6.452 8 C -0.172 4.172 9 C -0.071 4.071 10 C -0.122 4.122 11 C -0.070 4.070 12 C -0.117 4.117 13 Cl -0.017 7.017 14 C 0.104 3.896 15 F -0.112 7.112 16 C -0.044 4.044 17 C 0.064 3.936 18 H 0.096 0.904 19 N -0.363 5.363 20 C -0.370 4.370 21 H 0.103 0.897 22 C -0.262 4.262 23 N -0.620 5.620 24 Si 0.796 3.204 25 H -0.204 1.204 26 H -0.232 1.232 27 H -0.201 1.201 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.180 0.820 37 H 0.206 0.794 38 H 0.199 0.801 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.214 0.786 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.828 -10.825 -9.931 17.139 hybrid contribution -1.074 -0.034 0.604 1.233 sum 7.754 -10.859 -9.327 16.280 Atomic orbital electron populations 1.21574 0.94553 1.00664 1.01633 1.21977 0.95674 0.96492 0.93869 1.21608 1.01433 0.93006 1.02062 1.22498 1.01988 0.78671 0.97178 1.48359 1.70567 1.06254 1.07833 1.17909 0.76569 0.84312 0.85298 1.90773 1.51936 1.86648 1.15891 1.19924 1.01490 0.93071 1.02748 1.21740 0.95381 0.98944 0.91068 1.21650 0.99383 0.90852 1.00287 1.21638 0.90895 1.02652 0.91825 1.21056 0.99617 0.88654 1.02384 1.98389 1.62408 1.52618 1.88279 1.17661 0.90060 0.92802 0.89113 1.91526 1.65316 1.93794 1.60593 1.23265 1.01689 1.02095 0.77323 1.21419 0.95309 0.90622 0.86252 0.90404 1.42679 1.13271 1.79291 1.01085 1.19632 0.96944 1.35877 0.84535 0.89695 1.25472 0.96335 1.03062 1.01328 1.69805 1.08073 1.54673 1.29449 0.85317 0.76725 0.78312 0.80017 1.20413 1.23177 1.20101 0.93095 0.91216 0.94748 0.90884 0.91082 0.93313 0.88895 0.91006 0.82032 0.79423 0.80060 0.93224 0.89501 0.78585 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 7.95 71.98 0.57 -3.54 16 2 C -0.08 -2.29 0.87 -50.71 -0.04 -2.34 16 3 C -0.12 -3.08 8.68 71.98 0.62 -2.46 16 4 C 0.12 3.26 5.87 86.93 0.51 3.77 16 5 N -0.60 -18.18 3.31 -814.95 -2.70 -20.88 16 6 C 0.57 19.10 7.23 86.74 0.63 19.73 16 7 O -0.57 -22.89 16.66 -3.93 -0.07 -22.95 16 8 C -0.17 -4.78 5.40 -20.06 -0.11 -4.89 16 9 C -0.05 -1.07 8.43 22.53 0.19 -0.88 16 10 C -0.10 -1.48 10.03 22.23 0.22 -1.26 16 11 C -0.05 -0.81 9.82 22.33 0.22 -0.59 16 12 C -0.09 -2.05 6.32 22.33 0.14 -1.91 16 13 Cl -0.05 -1.01 28.61 -2.72 -0.08 -1.09 16 14 C 0.12 3.68 7.22 22.69 0.16 3.84 16 15 F -0.13 -4.66 15.93 44.97 0.72 -3.95 16 16 C 0.08 2.52 5.33 86.73 0.46 2.98 16 17 C 0.17 5.87 2.84 46.18 0.13 6.00 16 18 H 0.08 2.49 8.02 -2.38 -0.02 2.47 16 19 N -0.72 -32.03 5.08 -317.35 -1.61 -33.64 16 20 C -0.24 -11.69 9.98 84.03 0.84 -10.86 16 21 H 0.09 3.86 7.83 -2.91 -0.02 3.84 16 22 C -0.07 -3.67 5.50 84.86 0.47 -3.21 16 23 N -0.97 -56.05 13.06 21.65 0.28 -55.76 16 24 Si 0.97 42.67 29.55 68.60 2.03 44.70 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 27 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 28 H 0.05 1.89 6.35 -2.39 -0.02 1.87 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.03 1.22 7.91 -2.38 -0.02 1.20 16 31 H 0.07 1.55 8.07 -2.39 -0.02 1.53 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 2.15 7.99 -2.39 -0.02 2.13 16 35 H 0.07 2.08 7.91 -2.39 -0.02 2.06 16 36 H 0.16 2.74 6.09 -2.91 -0.02 2.72 16 37 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.05 1.82 8.03 -2.39 -0.02 1.80 16 40 H 0.09 2.24 5.70 -2.39 -0.01 2.23 16 41 H 0.38 18.55 5.28 -92.71 -0.49 18.06 16 42 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -67.73 363.03 4.16 -63.57 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.57 Total: 25.61 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 5.02 Total: 4.38 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -4.03 Total: -110.28 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.07 Total: -22.95 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.72 Total: -3.95 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -67.73 4.16 -63.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996239578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.647 kcal (2) G-P(sol) polarization free energy of solvation -67.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds