Wall clock time and date at job start Sat Apr 11 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.88754 * 2 1 4 4 C 1.55133 * 111.18999 * 236.07222 * 2 1 3 5 5 N 1.47423 * 104.72128 * 279.19072 * 4 2 1 6 6 C 1.34780 * 125.64877 * 155.82081 * 5 4 2 7 7 O 1.21558 * 120.00065 * 4.56540 * 6 5 4 8 8 C 1.47771 * 119.99811 * 184.56888 * 6 5 4 9 9 C 1.39615 * 120.14533 * 311.92769 * 8 6 5 10 10 C 1.38116 * 119.84025 * 179.70717 * 9 8 6 11 11 F 1.35102 * 119.93820 * 180.25325 * 10 9 8 12 12 C 1.38627 * 120.12995 * 0.26959 * 10 9 8 13 13 C 1.38243 * 120.29304 * 359.97438 * 12 10 9 14 14 C 1.38157 * 120.15656 * 0.02562 * 13 12 10 15 15 Cl 1.73600 * 120.06292 * 180.02562 * 14 13 12 16 16 C 1.47021 * 108.70119 * 335.54989 * 5 4 2 17 17 C 1.54326 * 107.27279 * 1.29201 * 16 5 4 18 18 H 1.08995 * 110.71914 * 140.55461 * 17 16 5 19 19 N 1.46499 * 110.71517 * 263.64911 * 17 16 5 20 20 C 1.36940 * 120.00019 * 273.54023 * 19 17 16 21 21 H 1.07994 * 119.99797 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99661 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00338 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99697 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.47292 * 59.99981 * 24 22 20 26 26 H 1.48503 * 109.47202 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47093 * 299.99897 * 24 22 20 28 28 H 1.09002 * 109.46478 * 296.11580 * 1 2 3 29 29 H 1.08996 * 109.47498 * 56.11318 * 1 2 3 30 30 H 1.08995 * 109.47262 * 176.12022 * 1 2 3 31 31 H 1.09001 * 109.47430 * 183.88791 * 3 2 1 32 32 H 1.09007 * 109.47181 * 303.88420 * 3 2 1 33 33 H 1.08998 * 109.47102 * 63.88057 * 3 2 1 34 34 H 1.09005 * 110.49809 * 160.34626 * 4 2 1 35 35 H 1.08998 * 110.34483 * 37.94949 * 4 2 1 36 36 H 1.08002 * 120.07963 * 359.97335 * 9 8 6 37 37 H 1.07997 * 119.85372 * 180.02562 * 12 10 9 38 38 H 1.07996 * 119.91944 * 180.02562 * 13 12 10 39 39 H 1.09007 * 109.87984 * 120.70544 * 16 5 4 40 40 H 1.09005 * 109.88795 * 241.71615 * 16 5 4 41 41 H 0.97002 * 119.99656 * 93.54895 * 19 17 16 42 42 H 0.97002 * 119.99906 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0907 -0.8073 -1.2002 5 7 2.0138 -2.2161 -0.7727 6 6 1.9470 -3.2834 -1.5931 7 8 2.0307 -3.1314 -2.7962 8 6 1.7721 -4.6383 -1.0299 9 6 2.5719 -5.0649 0.0319 10 6 2.3989 -6.3305 0.5575 11 9 3.1684 -6.7434 1.5883 12 6 1.4375 -7.1779 0.0290 13 6 0.6459 -6.7629 -1.0257 14 6 0.8088 -5.4996 -1.5605 15 17 -0.1870 -4.9807 -2.8845 16 6 2.0286 -2.2644 0.6967 17 6 2.0862 -0.8075 1.2024 18 1 1.4525 -0.6785 2.0798 19 7 3.4663 -0.4165 1.5002 20 6 4.0024 -0.6813 2.7321 21 1 3.4079 -1.1788 3.4840 22 6 5.3099 -0.3104 3.0144 23 7 6.0342 0.2964 2.0981 24 14 6.0414 -0.6723 4.6946 25 1 6.0238 -2.1374 4.9371 26 1 7.4413 -0.1790 4.7418 27 1 5.2404 0.0122 5.7411 28 1 -0.3632 0.4524 0.9228 29 1 -0.3634 0.5729 -0.8531 30 1 -0.3633 -1.0253 -0.0695 31 1 3.1630 1.4034 -0.0697 32 1 1.6697 1.9732 -0.8532 33 1 1.7823 1.9302 0.9227 34 1 3.1253 -0.5270 -1.3988 35 1 1.4763 -0.6456 -2.0858 36 1 3.3212 -4.4054 0.4442 37 1 1.3057 -8.1664 0.4436 38 1 -0.1015 -7.4279 -1.4324 39 1 1.1219 -2.7476 1.0608 40 1 2.9050 -2.8136 1.0409 41 1 4.0003 0.0301 0.8247 42 1 6.9478 0.5559 2.2955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996347026.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:01 Heat of formation + Delta-G solvation = -39.965903 kcal Electronic energy + Delta-G solvation = -27992.381490 eV Core-core repulsion = 23913.268851 eV Total energy + Delta-G solvation = -4079.112640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.08457 -40.47232 -39.02460 -37.62008 -36.54835 -34.03143 -33.36539 -31.59840 -30.81864 -30.47749 -28.01789 -26.79903 -26.49855 -24.34209 -23.57310 -22.86196 -21.58536 -19.84076 -18.87296 -17.53830 -17.22521 -17.09356 -16.85744 -16.24241 -15.76800 -15.57457 -15.32376 -14.72478 -14.20488 -14.15175 -13.94770 -13.90840 -13.45290 -13.30019 -13.06052 -12.77390 -12.67158 -12.50334 -12.20342 -11.86572 -11.85375 -11.60484 -11.49664 -11.39606 -11.10229 -11.03798 -10.92066 -10.62061 -10.48247 -10.30603 -9.92127 -9.79956 -9.68915 -9.46402 -9.03180 -8.81825 -8.31590 -7.11553 -5.87882 -3.18390 0.48565 0.73632 1.90250 2.65347 3.05438 3.29920 3.37693 3.42968 3.43848 3.93792 4.27839 4.45866 4.48516 4.64064 4.83212 4.85963 5.03520 5.19035 5.21472 5.39222 5.43220 5.56474 5.61074 5.64117 5.68621 5.71156 5.75354 5.86709 5.91861 6.08937 6.14918 6.19604 6.22122 6.30767 6.34978 6.38024 6.51044 6.57684 6.71739 6.87444 7.59659 7.72787 8.24791 8.30010 9.41973 9.95827 10.30767 11.33912 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.004380 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.562571 B = 6391.883048 C = 8341.958138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.125 4.125 4 C 0.122 3.878 5 N -0.595 5.595 6 C 0.569 3.431 7 O -0.526 6.526 8 C -0.080 4.080 9 C -0.111 4.111 10 C 0.104 3.896 11 F -0.129 7.129 12 C -0.127 4.127 13 C -0.089 4.089 14 C -0.009 4.009 15 Cl -0.042 7.042 16 C 0.066 3.934 17 C 0.179 3.821 18 H 0.071 0.929 19 N -0.711 5.711 20 C -0.249 4.249 21 H 0.071 0.929 22 C -0.005 4.005 23 N -0.928 5.928 24 Si 0.906 3.094 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.158 0.842 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.387 0.613 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.406 -10.555 -5.563 17.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.090 4.090 3 C -0.183 4.183 4 C 0.000 4.000 5 N -0.327 5.327 6 C 0.356 3.644 7 O -0.403 6.403 8 C -0.084 4.084 9 C -0.131 4.131 10 C 0.084 3.916 11 F -0.107 7.107 12 C -0.147 4.147 13 C -0.108 4.108 14 C -0.037 4.037 15 Cl -0.012 7.012 16 C -0.060 4.060 17 C 0.067 3.933 18 H 0.089 0.911 19 N -0.352 5.352 20 C -0.380 4.380 21 H 0.089 0.911 22 C -0.202 4.202 23 N -0.575 5.575 24 Si 0.736 3.264 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.176 0.824 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.223 0.777 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.333 -10.505 -6.144 18.052 hybrid contribution 0.835 -0.284 0.929 1.281 sum -12.499 -10.788 -5.215 17.315 Atomic orbital electron populations 1.21679 0.93876 1.01505 1.01666 1.22052 0.95347 0.96118 0.95485 1.21575 1.02101 0.93477 1.01122 1.22368 1.01289 0.79223 0.97102 1.48298 1.70562 1.05982 1.07840 1.17537 0.77942 0.83096 0.85871 1.90810 1.50366 1.85349 1.13807 1.19641 0.96888 0.95358 0.96498 1.21553 1.00603 0.95633 0.95270 1.17564 0.92606 0.93479 0.87932 1.91566 1.73349 1.90283 1.55527 1.21235 0.95532 1.00647 0.97249 1.20835 0.99981 0.94115 0.95874 1.20916 0.95278 0.94478 0.93034 1.98406 1.67256 1.90652 1.44912 1.23489 1.00881 1.03191 0.78389 1.21212 0.88794 0.88927 0.94370 0.91100 1.42448 1.08181 1.69977 1.14636 1.19160 0.95545 1.32823 0.90494 0.91068 1.24732 0.96805 1.00819 0.97854 1.69641 1.09539 1.45048 1.33287 0.86303 0.78276 0.77941 0.83841 1.21168 1.21678 1.21163 0.92245 0.92739 0.92871 0.91175 0.93559 0.92021 0.90904 0.90982 0.82414 0.83434 0.83397 0.92625 0.90286 0.77698 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.58 37.16 0.32 -1.31 16 2 C -0.09 -1.33 0.84 -152.24 -0.13 -1.46 16 3 C -0.12 -1.90 8.22 37.16 0.31 -1.60 16 4 C 0.12 1.97 5.81 -2.41 -0.01 1.95 16 5 N -0.59 -9.80 3.31 -171.51 -0.57 -10.37 16 6 C 0.57 9.66 6.93 -12.36 -0.09 9.58 16 7 O -0.53 -10.20 16.07 5.32 0.09 -10.11 16 8 C -0.08 -1.16 5.41 -104.95 -0.57 -1.73 16 9 C -0.11 -1.53 8.50 -39.11 -0.33 -1.86 16 10 C 0.10 1.25 7.29 -39.48 -0.29 0.96 16 11 F -0.13 -1.68 17.26 2.25 0.04 -1.64 16 12 C -0.13 -1.20 10.02 -39.44 -0.39 -1.59 16 13 C -0.09 -0.85 9.82 -39.61 -0.39 -1.24 16 14 C -0.01 -0.12 6.34 -39.07 -0.25 -0.36 16 15 Cl -0.04 -0.54 27.12 -51.86 -1.41 -1.94 16 16 C 0.07 1.08 5.09 -3.06 -0.02 1.07 16 17 C 0.18 3.16 2.86 -66.10 -0.19 2.97 16 18 H 0.07 1.24 8.02 -51.93 -0.42 0.83 16 19 N -0.71 -15.92 4.62 -51.66 -0.24 -16.16 16 20 C -0.25 -6.32 9.98 -15.06 -0.15 -6.47 16 21 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 22 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 23 N -0.93 -26.49 13.06 55.49 0.72 -25.77 16 24 Si 0.91 21.33 29.55 -169.99 -5.02 16.30 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.68 7.91 -51.93 -0.41 0.27 16 31 H 0.07 1.24 6.39 -51.93 -0.33 0.91 16 32 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.28 7.99 -51.93 -0.41 0.87 16 35 H 0.07 1.12 8.00 -51.93 -0.42 0.70 16 36 H 0.16 2.33 6.00 -52.49 -0.31 2.02 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 1.43 5.91 -51.93 -0.31 1.12 16 41 H 0.39 9.35 6.12 -40.82 -0.25 9.10 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -29.33 362.79 -8.56 -37.89 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.37 Total: 7.64 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.27 Total: -1.32 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.08 Total: -52.29 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.41 Total: -1.94 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.33 -8.56 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996347026.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.073 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds