Wall clock time and date at job start Sat Apr 11 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.88754 * 2 1 4 4 C 1.55133 * 111.18999 * 236.07222 * 2 1 3 5 5 N 1.47423 * 104.72128 * 279.19072 * 4 2 1 6 6 C 1.34780 * 125.64877 * 155.82081 * 5 4 2 7 7 O 1.21558 * 120.00065 * 4.56540 * 6 5 4 8 8 C 1.47771 * 119.99811 * 184.56888 * 6 5 4 9 9 C 1.39615 * 120.14533 * 311.92769 * 8 6 5 10 10 C 1.38116 * 119.84025 * 179.70717 * 9 8 6 11 11 F 1.35102 * 119.93820 * 180.25325 * 10 9 8 12 12 C 1.38627 * 120.12995 * 0.26959 * 10 9 8 13 13 C 1.38243 * 120.29304 * 359.97438 * 12 10 9 14 14 C 1.38157 * 120.15656 * 0.02562 * 13 12 10 15 15 Cl 1.73600 * 120.06292 * 180.02562 * 14 13 12 16 16 C 1.47021 * 108.70119 * 335.54989 * 5 4 2 17 17 C 1.54326 * 107.27279 * 1.29201 * 16 5 4 18 18 H 1.08995 * 110.71914 * 140.55461 * 17 16 5 19 19 N 1.46499 * 110.71517 * 263.64911 * 17 16 5 20 20 C 1.36940 * 120.00019 * 273.54023 * 19 17 16 21 21 H 1.07994 * 119.99797 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99661 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00338 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99697 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.47292 * 59.99981 * 24 22 20 26 26 H 1.48503 * 109.47202 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47093 * 299.99897 * 24 22 20 28 28 H 1.09002 * 109.46478 * 296.11580 * 1 2 3 29 29 H 1.08996 * 109.47498 * 56.11318 * 1 2 3 30 30 H 1.08995 * 109.47262 * 176.12022 * 1 2 3 31 31 H 1.09001 * 109.47430 * 183.88791 * 3 2 1 32 32 H 1.09007 * 109.47181 * 303.88420 * 3 2 1 33 33 H 1.08998 * 109.47102 * 63.88057 * 3 2 1 34 34 H 1.09005 * 110.49809 * 160.34626 * 4 2 1 35 35 H 1.08998 * 110.34483 * 37.94949 * 4 2 1 36 36 H 1.08002 * 120.07963 * 359.97335 * 9 8 6 37 37 H 1.07997 * 119.85372 * 180.02562 * 12 10 9 38 38 H 1.07996 * 119.91944 * 180.02562 * 13 12 10 39 39 H 1.09007 * 109.87984 * 120.70544 * 16 5 4 40 40 H 1.09005 * 109.88795 * 241.71615 * 16 5 4 41 41 H 0.97002 * 119.99656 * 93.54895 * 19 17 16 42 42 H 0.97002 * 119.99906 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0907 -0.8073 -1.2002 5 7 2.0138 -2.2161 -0.7727 6 6 1.9470 -3.2834 -1.5931 7 8 2.0307 -3.1314 -2.7962 8 6 1.7721 -4.6383 -1.0299 9 6 2.5719 -5.0649 0.0319 10 6 2.3989 -6.3305 0.5575 11 9 3.1684 -6.7434 1.5883 12 6 1.4375 -7.1779 0.0290 13 6 0.6459 -6.7629 -1.0257 14 6 0.8088 -5.4996 -1.5605 15 17 -0.1870 -4.9807 -2.8845 16 6 2.0286 -2.2644 0.6967 17 6 2.0862 -0.8075 1.2024 18 1 1.4525 -0.6785 2.0798 19 7 3.4663 -0.4165 1.5002 20 6 4.0024 -0.6813 2.7321 21 1 3.4079 -1.1788 3.4840 22 6 5.3099 -0.3104 3.0144 23 7 6.0342 0.2964 2.0981 24 14 6.0414 -0.6723 4.6946 25 1 6.0238 -2.1374 4.9371 26 1 7.4413 -0.1790 4.7418 27 1 5.2404 0.0122 5.7411 28 1 -0.3632 0.4524 0.9228 29 1 -0.3634 0.5729 -0.8531 30 1 -0.3633 -1.0253 -0.0695 31 1 3.1630 1.4034 -0.0697 32 1 1.6697 1.9732 -0.8532 33 1 1.7823 1.9302 0.9227 34 1 3.1253 -0.5270 -1.3988 35 1 1.4763 -0.6456 -2.0858 36 1 3.3212 -4.4054 0.4442 37 1 1.3057 -8.1664 0.4436 38 1 -0.1015 -7.4279 -1.4324 39 1 1.1219 -2.7476 1.0608 40 1 2.9050 -2.8136 1.0409 41 1 4.0003 0.0301 0.8247 42 1 6.9478 0.5559 2.2955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996347026.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:01 Heat of formation + Delta-G solvation = -56.070076 kcal Electronic energy + Delta-G solvation = -27993.079820 eV Core-core repulsion = 23913.268851 eV Total energy + Delta-G solvation = -4079.810969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.06243 -41.72235 -40.15228 -38.90880 -37.51443 -35.75541 -34.74723 -32.69266 -32.51510 -31.42537 -29.50089 -28.05435 -27.75905 -25.87747 -24.90630 -23.82229 -23.01599 -21.02992 -20.26116 -19.10422 -18.63125 -18.16177 -17.79279 -17.43847 -17.04279 -16.75590 -16.53086 -16.28949 -15.79249 -15.46080 -15.17951 -15.00498 -14.59213 -14.52601 -14.42816 -14.06863 -13.79656 -13.69070 -13.47192 -13.24675 -13.09473 -12.81646 -12.75423 -12.70888 -12.65910 -12.37887 -12.19970 -12.11317 -12.08905 -11.81073 -11.46361 -11.30055 -11.11379 -10.90743 -10.39556 -9.78793 -9.67776 -9.01800 -7.92226 -5.20587 -0.47966 -0.18460 0.94605 1.45896 1.49966 1.50944 1.56744 1.84156 2.26155 2.57173 2.95510 3.23139 3.38482 3.44110 3.59435 3.78300 3.81474 3.87277 3.94680 4.03347 4.23940 4.29325 4.44329 4.53421 4.58902 4.60333 4.74097 4.78319 4.82244 4.85454 4.89280 4.94267 5.00026 5.07718 5.09257 5.22286 5.30820 5.39143 5.48637 5.54318 5.59839 6.28635 6.39565 6.92521 7.36908 8.10204 8.33695 9.30610 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.004380 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.562571 B = 6391.883048 C = 8341.958138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 C -0.119 4.119 4 C 0.121 3.879 5 N -0.596 5.596 6 C 0.566 3.434 7 O -0.557 6.557 8 C -0.101 4.101 9 C -0.123 4.123 10 C 0.095 3.905 11 F -0.137 7.137 12 C -0.102 4.102 13 C -0.072 4.072 14 C -0.016 4.016 15 Cl -0.047 7.047 16 C 0.079 3.921 17 C 0.170 3.830 18 H 0.079 0.921 19 N -0.722 5.722 20 C -0.237 4.237 21 H 0.081 0.919 22 C -0.068 4.068 23 N -0.967 5.967 24 Si 0.964 3.036 25 H -0.280 1.280 26 H -0.302 1.302 27 H -0.277 1.277 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.136 0.864 37 H 0.188 0.812 38 H 0.187 0.813 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.376 0.624 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.144 -12.674 -5.013 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.077 4.077 3 C -0.177 4.177 4 C -0.001 4.001 5 N -0.327 5.327 6 C 0.354 3.646 7 O -0.436 6.436 8 C -0.105 4.105 9 C -0.142 4.142 10 C 0.075 3.925 11 F -0.115 7.115 12 C -0.121 4.121 13 C -0.091 4.091 14 C -0.044 4.044 15 Cl -0.018 7.018 16 C -0.046 4.046 17 C 0.060 3.940 18 H 0.097 0.903 19 N -0.361 5.361 20 C -0.368 4.368 21 H 0.099 0.901 22 C -0.261 4.261 23 N -0.618 5.618 24 Si 0.794 3.206 25 H -0.207 1.207 26 H -0.229 1.229 27 H -0.203 1.203 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.154 0.846 37 H 0.205 0.795 38 H 0.204 0.796 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.209 0.791 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -16.130 -12.645 -5.574 21.240 hybrid contribution 1.608 0.301 0.712 1.784 sum -14.522 -12.344 -4.862 19.670 Atomic orbital electron populations 1.21637 0.91155 1.02086 1.03112 1.22005 0.97193 0.95228 0.93247 1.21505 1.00123 0.93987 1.02089 1.22350 1.00144 0.79520 0.98069 1.48357 1.70365 1.06154 1.07842 1.17982 0.76988 0.84059 0.85540 1.90778 1.51815 1.86014 1.15038 1.19440 0.98830 0.94484 0.97757 1.21346 1.00586 0.96524 0.95761 1.17723 0.93407 0.93337 0.88004 1.91549 1.73795 1.90230 1.55934 1.21646 0.93135 1.01422 0.95883 1.21265 0.99939 0.92978 0.94883 1.21136 0.94894 0.95348 0.92975 1.98405 1.67214 1.90916 1.45255 1.23229 1.01137 1.01842 0.78377 1.21461 0.86565 0.90079 0.95891 0.90278 1.42585 1.09977 1.70032 1.13543 1.19560 0.95389 1.30462 0.91420 0.90142 1.25428 0.97675 1.02088 1.00866 1.69801 1.09380 1.47493 1.35076 0.85357 0.76893 0.77783 0.80586 1.20676 1.22864 1.20264 0.91027 0.91055 0.92753 0.94324 0.90988 0.92299 0.93385 0.90114 0.84604 0.79467 0.79579 0.90220 0.92313 0.79050 0.94242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 8.58 71.98 0.62 -2.16 16 2 C -0.08 -2.21 0.84 -50.71 -0.04 -2.25 16 3 C -0.12 -3.61 8.22 71.98 0.59 -3.02 16 4 C 0.12 3.96 5.81 86.93 0.50 4.47 16 5 N -0.60 -19.84 3.31 -814.81 -2.70 -22.54 16 6 C 0.57 19.42 6.93 86.76 0.60 20.03 16 7 O -0.56 -21.95 16.07 -3.90 -0.06 -22.02 16 8 C -0.10 -2.88 5.41 -20.07 -0.11 -2.99 16 9 C -0.12 -3.35 8.50 22.57 0.19 -3.16 16 10 C 0.09 2.11 7.29 22.33 0.16 2.27 16 11 F -0.14 -3.37 17.26 44.97 0.78 -2.60 16 12 C -0.10 -1.50 10.02 22.36 0.22 -1.28 16 13 C -0.07 -1.09 9.82 22.25 0.22 -0.87 16 14 C -0.02 -0.36 6.34 22.60 0.14 -0.22 16 15 Cl -0.05 -1.14 27.12 -2.72 -0.07 -1.21 16 16 C 0.08 2.59 5.09 86.73 0.44 3.03 16 17 C 0.17 5.97 2.86 46.18 0.13 6.10 16 18 H 0.08 2.67 8.02 -2.39 -0.02 2.65 16 19 N -0.72 -33.06 4.62 -317.34 -1.47 -34.52 16 20 C -0.24 -12.11 9.98 84.03 0.84 -11.27 16 21 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 22 C -0.07 -3.71 5.50 84.86 0.47 -3.25 16 23 N -0.97 -57.28 13.06 21.65 0.28 -56.99 16 24 Si 0.96 44.55 29.55 68.60 2.03 46.58 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 27 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.24 7.91 -2.39 -0.02 1.22 16 31 H 0.04 1.41 6.39 -2.39 -0.02 1.40 16 32 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.79 7.99 -2.38 -0.02 1.77 16 35 H 0.08 2.49 8.00 -2.39 -0.02 2.47 16 36 H 0.14 4.24 6.00 -2.91 -0.02 4.22 16 37 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.06 2.18 5.91 -2.38 -0.01 2.17 16 41 H 0.38 18.99 6.12 -92.71 -0.57 18.42 16 42 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -65.94 362.79 4.26 -61.68 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.49 Total: 26.20 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 4.98 Total: 5.43 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -3.88 Total: -114.06 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.07 Total: -1.21 kcal Total: -65.94 4.26 -61.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996347026.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.606 kcal (2) G-P(sol) polarization free energy of solvation -65.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds