Wall clock time and date at job start Sat Apr 11 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.88974 * 2 1 4 4 C 1.55134 * 111.19461 * 236.07010 * 2 1 3 5 5 N 1.47428 * 104.72163 * 279.19152 * 4 2 1 6 6 C 1.34772 * 125.64770 * 155.81281 * 5 4 2 7 7 O 1.21574 * 120.00406 * 4.57250 * 6 5 4 8 8 C 1.47651 * 119.99985 * 184.56716 * 6 5 4 9 9 C 1.39701 * 120.12835 * 311.87046 * 8 6 5 10 10 C 1.37783 * 119.88874 * 179.97438 * 9 8 6 11 11 C 1.38713 * 120.15779 * 0.27819 * 10 9 8 12 12 F 1.35100 * 119.86848 * 179.70007 * 11 10 9 13 13 C 1.38570 * 120.26127 * 359.43841 * 11 10 9 14 14 C 1.38026 * 120.10593 * 0.55937 * 13 11 10 15 15 Cl 1.73598 * 120.08118 * 179.74289 * 14 13 11 16 16 C 1.47022 * 108.70167 * 335.55205 * 5 4 2 17 17 C 1.54325 * 107.27425 * 1.28627 * 16 5 4 18 18 H 1.08992 * 110.72584 * 140.55517 * 17 16 5 19 19 N 1.46499 * 110.72311 * 263.65491 * 17 16 5 20 20 C 1.36931 * 120.00048 * 273.54942 * 19 17 16 21 21 H 1.08005 * 120.00229 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00077 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00025 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99970 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47357 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47487 * 119.99528 * 24 22 20 27 27 H 1.48501 * 109.47167 * 239.99586 * 24 22 20 28 28 H 1.08996 * 109.46994 * 296.11828 * 1 2 3 29 29 H 1.08997 * 109.47101 * 56.11996 * 1 2 3 30 30 H 1.09004 * 109.46931 * 176.12066 * 1 2 3 31 31 H 1.08997 * 109.47557 * 183.87932 * 3 2 1 32 32 H 1.09000 * 109.46859 * 303.88266 * 3 2 1 33 33 H 1.09000 * 109.46970 * 63.87586 * 3 2 1 34 34 H 1.09000 * 110.49957 * 160.34993 * 4 2 1 35 35 H 1.09001 * 110.33803 * 37.95148 * 4 2 1 36 36 H 1.08000 * 120.05590 * 359.97438 * 9 8 6 37 37 H 1.07995 * 119.91964 * 179.97438 * 10 9 8 38 38 H 1.07996 * 119.94757 * 180.29966 * 13 11 10 39 39 H 1.09000 * 109.88530 * 120.70259 * 16 5 4 40 40 H 1.08999 * 109.88200 * 241.71409 * 16 5 4 41 41 H 0.96999 * 119.99919 * 93.53985 * 19 17 16 42 42 H 0.96994 * 119.99864 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0909 -0.8074 -1.2001 5 7 2.0140 -2.2162 -0.7726 6 6 1.9471 -3.2834 -1.5929 7 8 2.0308 -3.1315 -2.7962 8 6 1.7724 -4.6373 -1.0302 9 6 2.5738 -5.0642 0.0314 10 6 2.4062 -6.3284 0.5531 11 6 1.4478 -7.1796 0.0228 12 9 1.2925 -8.4201 0.5349 13 6 0.6454 -6.7606 -1.0263 14 6 0.8040 -5.4965 -1.5572 15 17 -0.1971 -4.9746 -2.8760 16 6 2.0286 -2.2644 0.6968 17 6 2.0862 -0.8075 1.2025 18 1 1.4524 -0.6784 2.0798 19 7 3.4662 -0.4164 1.5004 20 6 4.0023 -0.6813 2.7322 21 1 3.4076 -1.1783 3.4844 22 6 5.3098 -0.3102 3.0146 23 7 6.0344 0.2959 2.0981 24 14 6.0408 -0.6710 4.6953 25 1 5.0279 -1.3544 5.5394 26 1 7.2294 -1.5476 4.5404 27 1 6.4460 0.6026 5.3426 28 1 -0.3633 0.4524 0.9227 29 1 -0.3633 0.5729 -0.8531 30 1 -0.3633 -1.0254 -0.0695 31 1 3.1630 1.4034 -0.0695 32 1 1.6698 1.9731 -0.8532 33 1 1.7823 1.9302 0.9227 34 1 3.1254 -0.5271 -1.3986 35 1 1.4764 -0.6456 -2.0858 36 1 3.3235 -4.4045 0.4426 37 1 3.0257 -6.6591 1.3735 38 1 -0.1024 -7.4258 -1.4321 39 1 1.1219 -2.7475 1.0609 40 1 2.9049 -2.8136 1.0409 41 1 4.0003 0.0302 0.8249 42 1 6.9481 0.5548 2.2953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996574635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:23 Heat of formation + Delta-G solvation = -40.814303 kcal Electronic energy + Delta-G solvation = -27813.360321 eV Core-core repulsion = 23734.210892 eV Total energy + Delta-G solvation = -4079.149429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.25742 -40.47318 -39.01253 -37.59273 -36.62621 -34.03159 -33.33347 -31.35535 -30.89579 -30.82629 -28.02415 -26.78275 -26.38285 -24.19460 -23.44787 -23.18928 -21.57049 -19.75452 -18.86281 -18.03184 -17.37735 -17.14964 -16.76388 -15.99422 -15.75815 -15.59601 -14.99538 -14.77439 -14.24177 -14.22828 -13.98085 -13.93677 -13.62887 -13.43760 -13.19255 -12.80813 -12.67166 -12.48180 -12.10568 -11.87275 -11.84020 -11.61445 -11.51177 -11.38611 -11.16192 -11.05349 -10.97760 -10.63212 -10.49315 -10.26559 -9.91726 -9.79677 -9.70312 -9.33041 -9.06787 -8.95923 -8.30419 -7.13355 -5.90413 -3.20772 0.46632 0.75413 1.80958 2.66140 3.07192 3.34233 3.34445 3.40562 3.43099 3.87977 4.34895 4.44224 4.46254 4.60889 4.82168 4.88904 5.02931 5.10693 5.19437 5.38732 5.47734 5.54723 5.56079 5.63289 5.68663 5.75750 5.84403 5.86577 5.91830 6.08274 6.14761 6.19092 6.21396 6.30035 6.34171 6.35840 6.50802 6.57834 6.70732 6.86656 7.58120 7.74580 8.26441 8.28608 9.39586 9.93897 10.28790 11.31548 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.004068 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.704744 B = 6881.752854 C = 8772.697010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.122 3.878 5 N -0.596 5.596 6 C 0.570 3.430 7 O -0.529 6.529 8 C -0.120 4.120 9 C -0.045 4.045 10 C -0.151 4.151 11 C 0.128 3.872 12 F -0.131 7.131 13 C -0.156 4.156 14 C 0.031 3.969 15 Cl -0.036 7.036 16 C 0.067 3.933 17 C 0.179 3.821 18 H 0.071 0.929 19 N -0.712 5.712 20 C -0.248 4.248 21 H 0.073 0.927 22 C -0.006 4.006 23 N -0.927 5.927 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.157 0.843 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.387 0.613 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.393 -9.666 -4.985 16.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.090 4.090 3 C -0.183 4.183 4 C 0.000 4.000 5 N -0.328 5.328 6 C 0.357 3.643 7 O -0.406 6.406 8 C -0.125 4.125 9 C -0.064 4.064 10 C -0.170 4.170 11 C 0.108 3.892 12 F -0.109 7.109 13 C -0.176 4.176 14 C 0.003 3.997 15 Cl -0.006 7.006 16 C -0.059 4.059 17 C 0.067 3.933 18 H 0.089 0.911 19 N -0.353 5.353 20 C -0.379 4.379 21 H 0.090 0.910 22 C -0.203 4.203 23 N -0.575 5.575 24 Si 0.736 3.264 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.174 0.826 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.223 0.777 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.379 -9.660 -5.585 16.666 hybrid contribution 0.630 -0.440 0.798 1.108 sum -11.749 -10.101 -4.787 16.216 Atomic orbital electron populations 1.21680 0.93892 1.01509 1.01651 1.22056 0.95337 0.96113 0.95526 1.21575 1.02091 0.93505 1.01112 1.22356 1.01238 0.79314 0.97064 1.48292 1.70752 1.05949 1.07797 1.17537 0.77791 0.83144 0.85843 1.90809 1.50446 1.85461 1.13914 1.19897 0.98457 0.95632 0.98466 1.21446 0.97325 0.95421 0.92162 1.21239 0.99308 0.93979 1.02444 1.17641 0.96785 0.80651 0.94153 1.91539 1.94758 1.38832 1.85763 1.20866 1.02557 0.95957 0.98198 1.20555 0.93971 0.93274 0.91902 1.98415 1.66887 1.90350 1.44986 1.23465 1.00861 1.03096 0.78466 1.21214 0.88751 0.88995 0.94363 0.91130 1.42463 1.08201 1.69981 1.14644 1.19251 0.95495 1.32634 0.90478 0.90951 1.24739 0.96850 1.00884 0.97833 1.69661 1.09441 1.45206 1.33158 0.86164 0.79024 0.77506 0.83710 1.20480 1.21850 1.21812 0.92262 0.92758 0.92863 0.91179 0.93572 0.92042 0.90948 0.91044 0.82572 0.83272 0.83208 0.92624 0.90252 0.77704 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.59 37.16 0.32 -1.29 16 2 C -0.09 -1.31 0.84 -152.24 -0.13 -1.44 16 3 C -0.13 -1.88 8.22 37.16 0.31 -1.57 16 4 C 0.12 1.94 5.81 -2.41 -0.01 1.92 16 5 N -0.60 -9.56 3.31 -171.56 -0.57 -10.13 16 6 C 0.57 9.49 6.92 -12.42 -0.09 9.40 16 7 O -0.53 -10.17 16.08 5.30 0.09 -10.09 16 8 C -0.12 -1.70 5.41 -104.93 -0.57 -2.27 16 9 C -0.05 -0.56 8.51 -39.20 -0.33 -0.89 16 10 C -0.15 -1.61 10.01 -39.57 -0.40 -2.00 16 11 C 0.13 1.37 7.30 -39.28 -0.29 1.08 16 12 F -0.13 -1.40 17.26 2.25 0.04 -1.36 16 13 C -0.16 -1.68 9.79 -39.54 -0.39 -2.07 16 14 C 0.03 0.40 6.34 -39.08 -0.25 0.15 16 15 Cl -0.04 -0.47 27.13 -51.86 -1.41 -1.88 16 16 C 0.07 1.05 5.09 -3.06 -0.02 1.03 16 17 C 0.18 3.07 2.86 -66.09 -0.19 2.88 16 18 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 19 N -0.71 -15.56 4.62 -51.65 -0.24 -15.79 16 20 C -0.25 -6.12 9.98 -15.06 -0.15 -6.27 16 21 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 23 N -0.93 -26.07 13.06 55.49 0.72 -25.35 16 24 Si 0.91 20.87 29.55 -169.99 -5.02 15.85 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.67 7.91 -51.93 -0.41 0.26 16 31 H 0.07 1.22 6.39 -51.93 -0.33 0.89 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.26 7.99 -51.93 -0.41 0.84 16 35 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 36 H 0.16 2.00 6.00 -52.49 -0.32 1.68 16 37 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.34 5.91 -51.93 -0.31 1.03 16 41 H 0.39 9.18 6.12 -40.82 -0.25 8.93 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -28.63 362.80 -8.56 -37.19 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.37 Total: 7.67 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.27 Total: -1.60 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.08 Total: -51.27 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.41 Total: -1.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.63 -8.56 -37.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996574635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.622 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds