Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.88974 * 2 1 4 4 C 1.55134 * 111.19461 * 236.07010 * 2 1 3 5 5 N 1.47428 * 104.72163 * 279.19152 * 4 2 1 6 6 C 1.34772 * 125.64770 * 155.81281 * 5 4 2 7 7 O 1.21574 * 120.00406 * 4.57250 * 6 5 4 8 8 C 1.47651 * 119.99985 * 184.56716 * 6 5 4 9 9 C 1.39701 * 120.12835 * 311.87046 * 8 6 5 10 10 C 1.37783 * 119.88874 * 179.97438 * 9 8 6 11 11 C 1.38713 * 120.15779 * 0.27819 * 10 9 8 12 12 F 1.35100 * 119.86848 * 179.70007 * 11 10 9 13 13 C 1.38570 * 120.26127 * 359.43841 * 11 10 9 14 14 C 1.38026 * 120.10593 * 0.55937 * 13 11 10 15 15 Cl 1.73598 * 120.08118 * 179.74289 * 14 13 11 16 16 C 1.47022 * 108.70167 * 335.55205 * 5 4 2 17 17 C 1.54325 * 107.27425 * 1.28627 * 16 5 4 18 18 H 1.08992 * 110.72584 * 140.55517 * 17 16 5 19 19 N 1.46499 * 110.72311 * 263.65491 * 17 16 5 20 20 C 1.36931 * 120.00048 * 273.54942 * 19 17 16 21 21 H 1.08005 * 120.00229 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00077 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00025 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99970 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47357 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47487 * 119.99528 * 24 22 20 27 27 H 1.48501 * 109.47167 * 239.99586 * 24 22 20 28 28 H 1.08996 * 109.46994 * 296.11828 * 1 2 3 29 29 H 1.08997 * 109.47101 * 56.11996 * 1 2 3 30 30 H 1.09004 * 109.46931 * 176.12066 * 1 2 3 31 31 H 1.08997 * 109.47557 * 183.87932 * 3 2 1 32 32 H 1.09000 * 109.46859 * 303.88266 * 3 2 1 33 33 H 1.09000 * 109.46970 * 63.87586 * 3 2 1 34 34 H 1.09000 * 110.49957 * 160.34993 * 4 2 1 35 35 H 1.09001 * 110.33803 * 37.95148 * 4 2 1 36 36 H 1.08000 * 120.05590 * 359.97438 * 9 8 6 37 37 H 1.07995 * 119.91964 * 179.97438 * 10 9 8 38 38 H 1.07996 * 119.94757 * 180.29966 * 13 11 10 39 39 H 1.09000 * 109.88530 * 120.70259 * 16 5 4 40 40 H 1.08999 * 109.88200 * 241.71409 * 16 5 4 41 41 H 0.96999 * 119.99919 * 93.53985 * 19 17 16 42 42 H 0.96994 * 119.99864 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0909 -0.8074 -1.2001 5 7 2.0140 -2.2162 -0.7726 6 6 1.9471 -3.2834 -1.5929 7 8 2.0308 -3.1315 -2.7962 8 6 1.7724 -4.6373 -1.0302 9 6 2.5738 -5.0642 0.0314 10 6 2.4062 -6.3284 0.5531 11 6 1.4478 -7.1796 0.0228 12 9 1.2925 -8.4201 0.5349 13 6 0.6454 -6.7606 -1.0263 14 6 0.8040 -5.4965 -1.5572 15 17 -0.1971 -4.9746 -2.8760 16 6 2.0286 -2.2644 0.6968 17 6 2.0862 -0.8075 1.2025 18 1 1.4524 -0.6784 2.0798 19 7 3.4662 -0.4164 1.5004 20 6 4.0023 -0.6813 2.7322 21 1 3.4076 -1.1783 3.4844 22 6 5.3098 -0.3102 3.0146 23 7 6.0344 0.2959 2.0981 24 14 6.0408 -0.6710 4.6953 25 1 5.0279 -1.3544 5.5394 26 1 7.2294 -1.5476 4.5404 27 1 6.4460 0.6026 5.3426 28 1 -0.3633 0.4524 0.9227 29 1 -0.3633 0.5729 -0.8531 30 1 -0.3633 -1.0254 -0.0695 31 1 3.1630 1.4034 -0.0695 32 1 1.6698 1.9731 -0.8532 33 1 1.7823 1.9302 0.9227 34 1 3.1254 -0.5271 -1.3986 35 1 1.4764 -0.6456 -2.0858 36 1 3.3235 -4.4045 0.4426 37 1 3.0257 -6.6591 1.3735 38 1 -0.1024 -7.4258 -1.4321 39 1 1.1219 -2.7475 1.0609 40 1 2.9049 -2.8136 1.0409 41 1 4.0003 0.0302 0.8249 42 1 6.9481 0.5548 2.2953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996574635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -55.837819 kcal Electronic energy + Delta-G solvation = -27814.011789 eV Core-core repulsion = 23734.210892 eV Total energy + Delta-G solvation = -4079.800898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.11666 -41.69198 -40.13169 -38.86548 -37.60499 -35.71753 -34.68233 -32.60367 -32.27528 -31.87973 -29.45773 -28.02409 -27.61433 -25.79584 -24.63707 -24.15986 -22.94514 -20.93061 -20.21246 -19.07178 -18.95015 -18.35922 -17.84689 -17.14390 -16.94980 -16.76217 -16.31188 -15.94165 -15.77362 -15.45604 -15.24075 -14.99648 -14.83463 -14.54834 -14.42970 -14.10107 -14.00345 -13.67185 -13.37252 -13.21973 -13.07100 -12.83818 -12.76972 -12.67582 -12.50765 -12.40158 -12.17353 -12.11305 -11.99984 -11.80200 -11.43361 -11.28108 -11.09151 -10.89591 -10.23838 -9.94259 -9.62294 -8.98299 -7.89180 -5.17251 -0.51143 -0.14907 0.84149 1.48743 1.51420 1.53545 1.61671 1.88459 2.28067 2.59953 2.97025 3.25009 3.42248 3.45144 3.62680 3.77976 3.81830 3.90242 3.95857 4.06796 4.15563 4.32801 4.47352 4.54172 4.60245 4.66095 4.68409 4.80346 4.83702 4.90737 4.93271 4.96216 5.03470 5.10075 5.11541 5.26205 5.33965 5.41221 5.47078 5.57630 5.62834 6.31886 6.45494 6.98612 7.40231 8.13709 8.37100 9.34175 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.004068 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.704744 B = 6881.752854 C = 8772.697010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 C -0.119 4.119 4 C 0.122 3.878 5 N -0.596 5.596 6 C 0.567 3.433 7 O -0.561 6.561 8 C -0.139 4.139 9 C -0.048 4.048 10 C -0.140 4.140 11 C 0.134 3.866 12 F -0.126 7.126 13 C -0.145 4.145 14 C 0.023 3.977 15 Cl -0.042 7.042 16 C 0.078 3.922 17 C 0.171 3.829 18 H 0.079 0.921 19 N -0.722 5.722 20 C -0.231 4.231 21 H 0.084 0.916 22 C -0.069 4.069 23 N -0.968 5.968 24 Si 0.963 3.037 25 H -0.262 1.262 26 H -0.300 1.300 27 H -0.301 1.301 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.149 0.851 37 H 0.172 0.828 38 H 0.174 0.826 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.375 0.625 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.471 -11.288 -3.993 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.078 4.078 3 C -0.177 4.177 4 C 0.000 4.000 5 N -0.327 5.327 6 C 0.356 3.644 7 O -0.441 6.441 8 C -0.143 4.143 9 C -0.067 4.067 10 C -0.159 4.159 11 C 0.115 3.885 12 F -0.104 7.104 13 C -0.164 4.164 14 C -0.005 4.005 15 Cl -0.013 7.013 16 C -0.047 4.047 17 C 0.060 3.940 18 H 0.097 0.903 19 N -0.362 5.362 20 C -0.363 4.363 21 H 0.101 0.899 22 C -0.262 4.262 23 N -0.619 5.619 24 Si 0.793 3.207 25 H -0.186 1.186 26 H -0.228 1.228 27 H -0.229 1.229 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.167 0.833 37 H 0.190 0.810 38 H 0.191 0.809 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.209 0.791 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.520 -11.311 -4.569 18.964 hybrid contribution 1.198 -0.001 0.458 1.282 sum -13.322 -11.313 -4.111 17.954 Atomic orbital electron populations 1.21636 0.91329 1.02052 1.03003 1.22009 0.97071 0.95226 0.93497 1.21503 1.00156 0.94076 1.01988 1.22325 1.00092 0.79701 0.97932 1.48346 1.70461 1.05982 1.07938 1.17952 0.76880 0.84074 0.85481 1.90781 1.51970 1.86107 1.15277 1.19777 1.00111 0.94619 0.99770 1.21357 0.97094 0.96200 0.92022 1.21420 0.99078 0.92961 1.02441 1.17647 0.96420 0.80648 0.93828 1.91560 1.94677 1.38563 1.85644 1.21058 1.02567 0.95235 0.97588 1.20616 0.93984 0.93864 0.92015 1.98411 1.66982 1.90539 1.45384 1.23253 1.01548 1.01693 0.78210 1.21454 0.86512 0.90248 0.95759 0.90287 1.42609 1.09953 1.70023 1.13573 1.19648 0.95219 1.30050 0.91353 0.89857 1.25415 0.97782 1.02244 1.00719 1.69815 1.09322 1.47775 1.34983 0.85225 0.78213 0.76628 0.80593 1.18574 1.22801 1.22885 0.91061 0.91274 0.92735 0.94244 0.91194 0.92342 0.93324 0.90445 0.83317 0.81020 0.80889 0.90117 0.91461 0.79090 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 8.59 71.98 0.62 -2.11 16 2 C -0.08 -2.17 0.84 -50.71 -0.04 -2.22 16 3 C -0.12 -3.53 8.22 71.98 0.59 -2.94 16 4 C 0.12 3.86 5.81 86.93 0.50 4.36 16 5 N -0.60 -18.87 3.31 -814.96 -2.70 -21.56 16 6 C 0.57 18.76 6.92 86.73 0.60 19.36 16 7 O -0.56 -21.79 16.08 -3.95 -0.06 -21.85 16 8 C -0.14 -3.78 5.41 -20.07 -0.11 -3.88 16 9 C -0.05 -1.13 8.51 22.52 0.19 -0.94 16 10 C -0.14 -2.62 10.01 22.28 0.22 -2.39 16 11 C 0.13 2.48 7.30 22.46 0.16 2.64 16 12 F -0.13 -2.28 17.26 44.97 0.78 -1.50 16 13 C -0.15 -2.73 9.79 22.30 0.22 -2.51 16 14 C 0.02 0.56 6.34 22.59 0.14 0.70 16 15 Cl -0.04 -1.07 27.13 -2.72 -0.07 -1.14 16 16 C 0.08 2.35 5.09 86.73 0.44 2.79 16 17 C 0.17 5.67 2.86 46.18 0.13 5.80 16 18 H 0.08 2.53 8.02 -2.39 -0.02 2.51 16 19 N -0.72 -31.69 4.62 -317.33 -1.47 -33.15 16 20 C -0.23 -11.33 9.98 84.04 0.84 -10.49 16 21 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 22 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 23 N -0.97 -56.03 13.06 21.65 0.28 -55.75 16 24 Si 0.96 43.16 29.55 68.60 2.03 45.19 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 26 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.21 7.91 -2.38 -0.02 1.20 16 31 H 0.04 1.41 6.39 -2.39 -0.02 1.40 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 1.76 7.99 -2.39 -0.02 1.74 16 35 H 0.08 2.35 8.00 -2.39 -0.02 2.33 16 36 H 0.15 3.71 6.00 -2.91 -0.02 3.69 16 37 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 2.22 5.91 -2.39 -0.01 2.21 16 41 H 0.38 18.36 6.12 -92.71 -0.57 17.79 16 42 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -62.29 362.80 4.26 -58.03 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.49 Total: 26.76 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 4.98 Total: 4.98 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -3.88 Total: -110.46 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.06 Total: -21.85 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.78 Total: -1.50 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.07 Total: -1.14 kcal Total: -62.29 4.26 -58.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996574635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.195 kcal (2) G-P(sol) polarization free energy of solvation -62.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds