Wall clock time and date at job start Sat Apr 11 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.30803 * 2 1 4 4 C 1.54394 * 110.34106 * 237.81986 * 2 1 3 5 5 N 1.48314 * 104.53755 * 217.33571 * 4 2 1 6 6 C 1.34770 * 127.77159 * 219.51664 * 5 4 2 7 7 O 1.21584 * 119.99623 * 355.38067 * 6 5 4 8 8 C 1.47641 * 120.00243 * 175.38002 * 6 5 4 9 9 C 1.39707 * 120.13170 * 41.22368 * 8 6 5 10 10 C 1.37765 * 119.89543 * 179.97438 * 9 8 6 11 11 C 1.38724 * 120.15819 * 0.02562 * 10 9 8 12 12 F 1.35106 * 119.86933 * 179.97438 * 11 10 9 13 13 C 1.38554 * 120.25896 * 359.97438 * 11 10 9 14 14 C 1.38031 * 120.10884 * 359.74180 * 13 11 10 15 15 Cl 1.73606 * 120.08207 * 180.25668 * 14 13 11 16 16 C 1.48146 * 104.38974 * 39.46875 * 5 4 2 17 17 C 1.54292 * 110.34189 * 122.17696 * 2 1 3 18 18 H 1.08997 * 110.34058 * 237.73935 * 17 2 1 19 19 N 1.46497 * 110.34069 * 359.97438 * 17 2 1 20 20 C 1.36944 * 119.99973 * 205.00185 * 19 17 2 21 21 H 1.07995 * 119.99679 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99717 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99456 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00459 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46970 * 90.00296 * 24 22 20 26 26 H 1.48499 * 109.47346 * 210.00483 * 24 22 20 27 27 H 1.48501 * 109.47289 * 330.00502 * 24 22 20 28 28 H 1.09001 * 109.47094 * 59.29812 * 1 2 3 29 29 H 1.08995 * 109.47595 * 179.30058 * 1 2 3 30 30 H 1.09005 * 109.46831 * 299.30183 * 1 2 3 31 31 H 1.08992 * 109.47050 * 60.69874 * 3 2 1 32 32 H 1.08995 * 109.47148 * 180.70136 * 3 2 1 33 33 H 1.09000 * 109.46977 * 300.69673 * 3 2 1 34 34 H 1.08997 * 110.40761 * 336.04968 * 4 2 1 35 35 H 1.09002 * 110.40265 * 98.48387 * 4 2 1 36 36 H 1.07999 * 120.04724 * 0.02562 * 9 8 6 37 37 H 1.08006 * 119.92411 * 179.97438 * 10 9 8 38 38 H 1.08007 * 119.94572 * 180.02562 * 13 11 10 39 39 H 1.09000 * 110.40379 * 201.68823 * 16 5 4 40 40 H 1.08997 * 110.51354 * 79.30677 * 16 5 4 41 41 H 0.97007 * 120.00286 * 25.00769 * 19 17 2 42 42 H 0.96998 * 119.99596 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0610 1.4349 0.0000 4 6 2.0667 -0.7710 -1.2253 5 7 3.2664 -1.4825 -0.7212 6 6 4.4423 -1.6680 -1.3529 7 8 4.5791 -1.2991 -2.5033 8 6 5.5644 -2.3191 -0.6480 9 6 5.3300 -3.4260 0.1716 10 6 6.3806 -4.0301 0.8266 11 6 7.6701 -3.5417 0.6746 12 9 8.6961 -4.1384 1.3201 13 6 7.9099 -2.4444 -0.1366 14 6 6.8661 -1.8343 -0.8026 15 17 7.1684 -0.4635 -1.8241 16 6 2.8800 -1.9417 0.6333 17 6 2.0663 -0.7704 1.2245 18 1 2.7095 -0.1271 1.8249 19 7 0.9554 -1.2785 2.0331 20 6 1.1370 -1.5258 3.3677 21 1 2.0991 -1.3459 3.8241 22 6 0.0845 -2.0077 4.1338 23 7 0.2592 -2.2459 5.4164 24 14 -1.5798 -2.3181 3.3444 25 1 -1.6354 -3.7134 2.8390 26 1 -2.6514 -2.1135 4.3519 27 1 -1.7757 -1.3743 2.2148 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3634 -1.0275 -0.0125 30 1 -0.3633 0.5030 0.8962 31 1 1.7154 1.9501 0.8961 32 1 3.1507 1.4190 -0.0126 33 1 1.6951 1.9577 -0.8837 34 1 1.3234 -1.4846 -1.5807 35 1 2.3401 -0.0776 -2.0206 36 1 4.3268 -3.8079 0.2908 37 1 6.1999 -4.8856 1.4607 38 1 8.9159 -2.0685 -0.2517 39 1 3.7671 -2.1314 1.2377 40 1 2.2644 -2.8391 0.5713 41 1 0.0911 -1.4397 1.6232 42 1 -0.4763 -2.5823 5.9518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996574637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:25 Heat of formation + Delta-G solvation = -28.412672 kcal Electronic energy + Delta-G solvation = -27783.456431 eV Core-core repulsion = 23704.844777 eV Total energy + Delta-G solvation = -4078.611654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.27311 -40.55490 -39.11311 -37.74192 -36.64274 -34.35749 -33.39431 -31.43293 -31.18835 -30.94151 -28.13225 -27.13049 -26.46530 -24.19796 -23.37302 -23.23827 -21.57520 -19.91187 -18.90042 -18.05719 -17.73115 -17.35017 -16.80588 -16.08693 -15.86710 -15.60486 -15.11080 -14.65571 -14.37097 -14.33260 -14.17181 -13.95529 -13.70610 -13.56260 -13.18450 -13.03438 -12.88034 -12.65229 -12.09310 -11.98754 -11.85767 -11.64242 -11.52677 -11.45814 -11.25259 -11.17970 -11.06965 -10.66109 -10.58787 -10.41131 -10.04044 -9.88575 -9.64955 -9.35134 -9.11364 -9.01553 -8.55909 -7.42941 -5.89573 -3.27201 0.39437 0.71122 1.79128 2.56766 2.88627 3.26810 3.28860 3.29160 3.37084 3.84341 4.27472 4.35548 4.46870 4.57338 4.77367 4.81818 4.88451 5.00523 5.06060 5.27402 5.39800 5.43527 5.49723 5.52102 5.57242 5.68263 5.75126 5.75921 5.79114 5.84500 5.94397 6.04281 6.10137 6.13888 6.21335 6.30650 6.33251 6.42198 6.55498 6.71865 7.60785 7.85751 8.13603 8.29226 9.06430 9.78375 9.96794 11.28171 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012113 B = 0.003911 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.930918 B = 7157.762973 C = 8803.433699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 C -0.131 4.131 4 C 0.119 3.881 5 N -0.611 5.611 6 C 0.577 3.423 7 O -0.528 6.528 8 C -0.127 4.127 9 C -0.044 4.044 10 C -0.152 4.152 11 C 0.132 3.868 12 F -0.129 7.129 13 C -0.157 4.157 14 C 0.035 3.965 15 Cl -0.032 7.032 16 C 0.068 3.932 17 C 0.182 3.818 18 H 0.073 0.927 19 N -0.739 5.739 20 C -0.253 4.253 21 H 0.091 0.909 22 C 0.011 3.989 23 N -0.929 5.929 24 Si 0.878 3.122 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.274 1.274 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.368 0.632 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.945 0.373 -12.847 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 C -0.188 4.188 4 C -0.003 4.003 5 N -0.344 5.344 6 C 0.365 3.635 7 O -0.405 6.405 8 C -0.131 4.131 9 C -0.063 4.063 10 C -0.171 4.171 11 C 0.112 3.888 12 F -0.107 7.107 13 C -0.176 4.176 14 C 0.007 3.993 15 Cl -0.002 7.002 16 C -0.057 4.057 17 C 0.070 3.930 18 H 0.091 0.909 19 N -0.383 5.383 20 C -0.382 4.382 21 H 0.109 0.891 22 C -0.185 4.185 23 N -0.575 5.575 24 Si 0.707 3.293 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.200 1.200 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.170 0.830 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.204 0.796 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.237 0.640 -13.316 17.435 hybrid contribution -0.981 -0.443 -0.174 1.090 sum 10.256 0.197 -13.489 16.947 Atomic orbital electron populations 1.21757 0.93565 1.01802 1.02050 1.21803 0.96304 0.95893 0.95280 1.21789 1.00640 0.94640 1.01774 1.22485 0.85805 0.95375 0.96648 1.48900 1.12214 1.54815 1.18444 1.17487 0.80989 0.79371 0.85680 1.90819 1.82081 1.51279 1.16322 1.19824 0.92719 0.99021 1.01488 1.21371 1.00185 0.92853 0.91905 1.21243 0.90622 1.02621 1.02576 1.17652 0.84716 0.92703 0.93685 1.91550 1.57660 1.82327 1.79181 1.20895 1.00245 0.96964 0.99510 1.20560 0.92446 0.91628 0.94684 1.98421 1.95832 1.40416 1.65579 1.23826 1.00195 1.00540 0.81179 1.21078 0.89888 0.91847 0.90189 0.90887 1.43023 1.08997 1.78889 1.07391 1.19080 0.98776 1.37215 0.83166 0.89096 1.24654 0.97544 1.00961 0.95362 1.69693 1.31926 1.50655 1.05275 0.86683 0.85569 0.78279 0.78726 1.20992 1.21615 1.20012 0.93028 0.92535 0.91032 0.91949 0.92803 0.92909 0.91079 0.90082 0.82952 0.83159 0.83092 0.90344 0.90229 0.79599 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 7.11 37.16 0.26 -1.62 16 2 C -0.09 -1.29 1.03 -153.10 -0.16 -1.44 16 3 C -0.13 -1.70 8.23 37.16 0.31 -1.40 16 4 C 0.12 1.62 6.14 -2.31 -0.01 1.60 16 5 N -0.61 -8.77 3.32 -170.35 -0.57 -9.33 16 6 C 0.58 8.71 7.18 -12.43 -0.09 8.62 16 7 O -0.53 -9.19 15.66 5.29 0.08 -9.10 16 8 C -0.13 -1.67 5.47 -104.94 -0.57 -2.24 16 9 C -0.04 -0.50 7.78 -39.21 -0.30 -0.81 16 10 C -0.15 -1.54 10.01 -39.57 -0.40 -1.94 16 11 C 0.13 1.40 7.31 -39.29 -0.29 1.11 16 12 F -0.13 -1.38 17.26 2.25 0.04 -1.34 16 13 C -0.16 -1.65 9.79 -39.54 -0.39 -2.04 16 14 C 0.03 0.43 6.33 -39.08 -0.25 0.19 16 15 Cl -0.03 -0.41 26.86 -51.86 -1.39 -1.80 16 16 C 0.07 1.01 5.15 -2.41 -0.01 1.00 16 17 C 0.18 3.07 3.35 -66.53 -0.22 2.84 16 18 H 0.07 1.32 7.66 -51.93 -0.40 0.92 16 19 N -0.74 -15.26 4.40 -52.07 -0.23 -15.49 16 20 C -0.25 -6.43 10.44 -15.06 -0.16 -6.59 16 21 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 22 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 23 N -0.93 -27.46 13.97 55.49 0.78 -26.68 16 24 Si 0.88 20.40 27.73 -169.99 -4.71 15.69 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.27 -5.87 6.52 56.52 0.37 -5.50 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.82 6.86 -51.93 -0.36 0.47 16 30 H 0.07 1.13 7.84 -51.93 -0.41 0.72 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.91 7.85 -51.93 -0.41 0.51 16 35 H 0.08 1.09 7.64 -51.93 -0.40 0.70 16 36 H 0.15 1.61 6.46 -52.49 -0.34 1.27 16 37 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.15 1.28 8.06 -52.48 -0.42 0.85 16 39 H 0.08 1.14 5.96 -51.93 -0.31 0.83 16 40 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 41 H 0.37 7.46 2.95 -40.82 -0.12 7.34 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 357.08 15.07 5.38 5.38 Total: -1.00 -29.73 357.08 -8.28 -38.01 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.28 Total: 7.18 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.38 Total: -2.50 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.02 Total: -51.51 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.71 Total: 15.69 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.39 Total: -1.80 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.73 -8.28 -38.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996574637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.597 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds