Wall clock time and date at job start Sat Apr 11 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.30803 * 2 1 4 4 C 1.54394 * 110.34106 * 237.81986 * 2 1 3 5 5 N 1.48314 * 104.53755 * 217.33571 * 4 2 1 6 6 C 1.34770 * 127.77159 * 219.51664 * 5 4 2 7 7 O 1.21584 * 119.99623 * 355.38067 * 6 5 4 8 8 C 1.47641 * 120.00243 * 175.38002 * 6 5 4 9 9 C 1.39707 * 120.13170 * 41.22368 * 8 6 5 10 10 C 1.37765 * 119.89543 * 179.97438 * 9 8 6 11 11 C 1.38724 * 120.15819 * 0.02562 * 10 9 8 12 12 F 1.35106 * 119.86933 * 179.97438 * 11 10 9 13 13 C 1.38554 * 120.25896 * 359.97438 * 11 10 9 14 14 C 1.38031 * 120.10884 * 359.74180 * 13 11 10 15 15 Cl 1.73606 * 120.08207 * 180.25668 * 14 13 11 16 16 C 1.48146 * 104.38974 * 39.46875 * 5 4 2 17 17 C 1.54292 * 110.34189 * 122.17696 * 2 1 3 18 18 H 1.08997 * 110.34058 * 237.73935 * 17 2 1 19 19 N 1.46497 * 110.34069 * 359.97438 * 17 2 1 20 20 C 1.36944 * 119.99973 * 205.00185 * 19 17 2 21 21 H 1.07995 * 119.99679 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99717 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99456 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00459 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46970 * 90.00296 * 24 22 20 26 26 H 1.48499 * 109.47346 * 210.00483 * 24 22 20 27 27 H 1.48501 * 109.47289 * 330.00502 * 24 22 20 28 28 H 1.09001 * 109.47094 * 59.29812 * 1 2 3 29 29 H 1.08995 * 109.47595 * 179.30058 * 1 2 3 30 30 H 1.09005 * 109.46831 * 299.30183 * 1 2 3 31 31 H 1.08992 * 109.47050 * 60.69874 * 3 2 1 32 32 H 1.08995 * 109.47148 * 180.70136 * 3 2 1 33 33 H 1.09000 * 109.46977 * 300.69673 * 3 2 1 34 34 H 1.08997 * 110.40761 * 336.04968 * 4 2 1 35 35 H 1.09002 * 110.40265 * 98.48387 * 4 2 1 36 36 H 1.07999 * 120.04724 * 0.02562 * 9 8 6 37 37 H 1.08006 * 119.92411 * 179.97438 * 10 9 8 38 38 H 1.08007 * 119.94572 * 180.02562 * 13 11 10 39 39 H 1.09000 * 110.40379 * 201.68823 * 16 5 4 40 40 H 1.08997 * 110.51354 * 79.30677 * 16 5 4 41 41 H 0.97007 * 120.00286 * 25.00769 * 19 17 2 42 42 H 0.96998 * 119.99596 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0610 1.4349 0.0000 4 6 2.0667 -0.7710 -1.2253 5 7 3.2664 -1.4825 -0.7212 6 6 4.4423 -1.6680 -1.3529 7 8 4.5791 -1.2991 -2.5033 8 6 5.5644 -2.3191 -0.6480 9 6 5.3300 -3.4260 0.1716 10 6 6.3806 -4.0301 0.8266 11 6 7.6701 -3.5417 0.6746 12 9 8.6961 -4.1384 1.3201 13 6 7.9099 -2.4444 -0.1366 14 6 6.8661 -1.8343 -0.8026 15 17 7.1684 -0.4635 -1.8241 16 6 2.8800 -1.9417 0.6333 17 6 2.0663 -0.7704 1.2245 18 1 2.7095 -0.1271 1.8249 19 7 0.9554 -1.2785 2.0331 20 6 1.1370 -1.5258 3.3677 21 1 2.0991 -1.3459 3.8241 22 6 0.0845 -2.0077 4.1338 23 7 0.2592 -2.2459 5.4164 24 14 -1.5798 -2.3181 3.3444 25 1 -1.6354 -3.7134 2.8390 26 1 -2.6514 -2.1135 4.3519 27 1 -1.7757 -1.3743 2.2148 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3634 -1.0275 -0.0125 30 1 -0.3633 0.5030 0.8962 31 1 1.7154 1.9501 0.8961 32 1 3.1507 1.4190 -0.0126 33 1 1.6951 1.9577 -0.8837 34 1 1.3234 -1.4846 -1.5807 35 1 2.3401 -0.0776 -2.0206 36 1 4.3268 -3.8079 0.2908 37 1 6.1999 -4.8856 1.4607 38 1 8.9159 -2.0685 -0.2517 39 1 3.7671 -2.1314 1.2377 40 1 2.2644 -2.8391 0.5713 41 1 0.0911 -1.4397 1.6232 42 1 -0.4763 -2.5823 5.9518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996574637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:24 Heat of formation + Delta-G solvation = -44.611843 kcal Electronic energy + Delta-G solvation = -27784.158879 eV Core-core repulsion = 23704.844777 eV Total energy + Delta-G solvation = -4079.314103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.12714 -41.68192 -40.18875 -38.91023 -37.59545 -35.95346 -34.73114 -33.06683 -32.28989 -31.88709 -29.55782 -28.28929 -27.56736 -25.64625 -24.59954 -24.14789 -22.99766 -20.99600 -20.36206 -19.38568 -18.94030 -18.44444 -17.78178 -17.23022 -16.93853 -16.79083 -16.28941 -16.00213 -15.76728 -15.41103 -15.23748 -15.19813 -14.84385 -14.64206 -14.49105 -14.22366 -14.04093 -13.92476 -13.45958 -13.28615 -13.09467 -12.92772 -12.70974 -12.60143 -12.49286 -12.39153 -12.19560 -12.14698 -11.92953 -11.88860 -11.56847 -11.35538 -11.07900 -10.93250 -10.21936 -9.98116 -9.77393 -9.26124 -7.97163 -5.31307 -0.53997 -0.15226 0.85147 1.42404 1.44400 1.49127 1.52252 1.78865 2.30644 2.52825 2.96240 3.20514 3.33172 3.45119 3.62191 3.64924 3.77620 3.80288 3.94665 3.96730 4.15741 4.31263 4.35218 4.47264 4.51495 4.64605 4.68424 4.75302 4.83125 4.84784 4.84882 4.89966 4.97107 4.99121 5.06613 5.12791 5.30553 5.38013 5.45559 5.48719 5.83943 6.26150 6.42575 6.96949 7.12900 7.86812 8.06508 9.23894 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012113 B = 0.003911 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.930918 B = 7157.762973 C = 8803.433699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 C -0.127 4.127 4 C 0.120 3.880 5 N -0.608 5.608 6 C 0.577 3.423 7 O -0.553 6.553 8 C -0.145 4.145 9 C -0.046 4.046 10 C -0.146 4.146 11 C 0.133 3.867 12 F -0.128 7.128 13 C -0.150 4.150 14 C 0.024 3.976 15 Cl -0.041 7.041 16 C 0.080 3.920 17 C 0.173 3.827 18 H 0.057 0.943 19 N -0.738 5.738 20 C -0.227 4.227 21 H 0.060 0.940 22 C -0.056 4.056 23 N -0.982 5.982 24 Si 0.939 3.061 25 H -0.278 1.278 26 H -0.303 1.303 27 H -0.244 1.244 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.159 0.841 37 H 0.172 0.828 38 H 0.171 0.829 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.373 0.627 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.758 0.116 -14.678 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.085 4.085 3 C -0.185 4.185 4 C -0.002 4.002 5 N -0.340 5.340 6 C 0.366 3.634 7 O -0.432 6.432 8 C -0.149 4.149 9 C -0.064 4.064 10 C -0.164 4.164 11 C 0.113 3.887 12 F -0.106 7.106 13 C -0.169 4.169 14 C -0.004 4.004 15 Cl -0.011 7.011 16 C -0.045 4.045 17 C 0.063 3.937 18 H 0.075 0.925 19 N -0.383 5.383 20 C -0.358 4.358 21 H 0.078 0.922 22 C -0.248 4.248 23 N -0.633 5.633 24 Si 0.767 3.233 25 H -0.205 1.205 26 H -0.230 1.230 27 H -0.168 1.168 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.177 0.823 37 H 0.190 0.810 38 H 0.189 0.811 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.210 0.790 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.071 0.404 -15.210 18.817 hybrid contribution -0.768 -0.333 0.400 0.928 sum 10.304 0.071 -14.810 18.042 Atomic orbital electron populations 1.21744 0.93002 1.01813 1.02572 1.21738 0.96716 0.96167 0.93873 1.21756 1.00230 0.94023 1.02444 1.22557 0.85721 0.95666 0.96253 1.48870 1.12472 1.54714 1.17981 1.17745 0.81265 0.78929 0.85421 1.90800 1.82468 1.52552 1.17430 1.19819 0.92429 1.00037 1.02610 1.21442 1.00896 0.92408 0.91669 1.21476 0.90106 1.02810 1.02019 1.17720 0.84883 0.92593 0.93469 1.91560 1.57648 1.82268 1.79113 1.21067 1.00741 0.96520 0.98587 1.20657 0.92699 0.91836 0.95234 1.98414 1.95830 1.40925 1.65948 1.23524 0.99998 0.99481 0.81539 1.21228 0.88999 0.92627 0.90835 0.92519 1.42939 1.10375 1.79075 1.05910 1.19017 0.97155 1.34585 0.85031 0.92196 1.25374 1.01524 1.02103 0.95773 1.69873 1.32918 1.53274 1.07187 0.85660 0.80402 0.78895 0.78327 1.20454 1.23034 1.16818 0.90138 0.92775 0.92838 0.92711 0.93428 0.90760 0.89771 0.89625 0.82313 0.81012 0.81129 0.90060 0.89933 0.78984 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 7.11 71.98 0.51 -2.86 16 2 C -0.08 -2.18 1.03 -51.27 -0.05 -2.23 16 3 C -0.13 -3.07 8.23 71.98 0.59 -2.48 16 4 C 0.12 2.96 6.14 86.50 0.53 3.49 16 5 N -0.61 -16.49 3.32 -811.13 -2.69 -19.19 16 6 C 0.58 16.76 7.18 86.73 0.62 17.39 16 7 O -0.55 -18.72 15.66 -3.98 -0.06 -18.78 16 8 C -0.14 -3.66 5.47 -20.07 -0.11 -3.77 16 9 C -0.05 -0.96 7.78 22.51 0.18 -0.78 16 10 C -0.15 -2.66 10.01 22.27 0.22 -2.43 16 11 C 0.13 2.54 7.31 22.46 0.16 2.71 16 12 F -0.13 -2.46 17.26 44.97 0.78 -1.68 16 13 C -0.15 -2.90 9.79 22.30 0.22 -2.68 16 14 C 0.02 0.56 6.33 22.59 0.14 0.71 16 15 Cl -0.04 -1.01 26.86 -2.72 -0.07 -1.08 16 16 C 0.08 2.28 5.15 86.53 0.45 2.72 16 17 C 0.17 5.67 3.35 45.90 0.15 5.83 16 18 H 0.06 2.05 7.66 -2.39 -0.02 2.03 16 19 N -0.74 -29.68 4.40 -318.65 -1.40 -31.08 16 20 C -0.23 -11.62 10.44 84.03 0.88 -10.74 16 21 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 22 C -0.06 -3.06 5.50 84.86 0.47 -2.59 16 23 N -0.98 -59.60 13.97 21.65 0.30 -59.29 16 24 Si 0.94 41.72 27.73 68.60 1.90 43.62 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.24 -9.47 6.52 99.48 0.65 -8.82 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.39 6.86 -2.39 -0.02 1.38 16 30 H 0.05 1.56 7.84 -2.38 -0.02 1.54 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.90 7.85 -2.39 -0.02 1.88 16 35 H 0.09 2.09 7.64 -2.39 -0.02 2.07 16 36 H 0.16 3.08 6.46 -2.91 -0.02 3.06 16 37 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 39 H 0.08 2.28 5.96 -2.39 -0.01 2.27 16 40 H 0.08 2.36 8.04 -2.39 -0.02 2.34 16 41 H 0.37 14.32 2.95 -92.70 -0.27 14.05 16 42 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -64.61 357.08 4.44 -60.17 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.73 Total: 25.05 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 4.96 Total: 2.27 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -3.79 Total: -109.56 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.06 Total: -18.78 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.78 Total: -1.68 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.90 Total: 43.62 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.07 Total: -1.08 kcal Total: -64.61 4.44 -60.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996574637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.555 kcal (2) G-P(sol) polarization free energy of solvation -64.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds